mRNA_L-elsbetiae_contig11815.1566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11815.1566.1
Unique NamemRNA_L-elsbetiae_contig11815.1566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11815.1566.1 vs. uniprot
Match: D7FZW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW1_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 8.170e-53
Identity = 97/140 (69.29%), Postives = 116/140 (82.86%), Query Frame = 1 
Query:  241 KAQVLGLLHMQSTPRKAEVVTWGYDLATPSGRRDNCATALLSLLLVVTAVTVSGLTSSMQLIYVQADLCTTRDSKLADNVDLMRDITNYHEARAASSLAVNVTATAYFGAQEGY-----NSLGLRFRWPSPYDLSEEERQ 645
            KA +LGLLH++STPRKAEVV WGYD +T SG RD CAT +L++LLV+TAVTVSGLTS++QLIYVQ DLC TRDS L  N++LMR+ITNY+ ARA +SLAVN+TATAYF A E Y     N+LGL F WPSPYDL+EE+RQ
Sbjct:   20 KAALLGLLHLKSTPRKAEVVKWGYDCSTGSGMRDYCATGVLAVLLVITAVTVSGLTSAVQLIYVQPDLCETRDSSLVANMELMRNITNYYNARATASLAVNITATAYFKAAETYTGEGLNALGLAFEWPSPYDLNEEQRQ 159
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11815.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZW1_ECTSI8.170e-5369.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11815contigL-elsbetiae_contig11815:430..3119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size647
Cds size645
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11815.1566.1prot_L-elsbetiae_contig11815.1566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11815 430..3119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.846417-CDS-L-elsbetiae_contig11815:429..5711622815384.846417-CDS-L-elsbetiae_contig11815:429..571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11815 430..571 -
1691682872.0373685-CDS-L-elsbetiae_contig11815:429..5711691682872.0373685-CDS-L-elsbetiae_contig11815:429..571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11815 430..571 -
1622815384.8588276-CDS-L-elsbetiae_contig11815:1857..19671622815384.8588276-CDS-L-elsbetiae_contig11815:1857..1967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11815 1858..1967 -
1691682872.0485356-CDS-L-elsbetiae_contig11815:1857..19671691682872.0485356-CDS-L-elsbetiae_contig11815:1857..1967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11815 1858..1967 -
1622815384.8688304-CDS-L-elsbetiae_contig11815:2726..31191622815384.8688304-CDS-L-elsbetiae_contig11815:2726..3119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11815 2727..3119 -
1691682872.0614228-CDS-L-elsbetiae_contig11815:2726..31191691682872.0614228-CDS-L-elsbetiae_contig11815:2726..3119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11815 2727..3119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11815.1566.1

>prot_L-elsbetiae_contig11815.1566.1 ID=prot_L-elsbetiae_contig11815.1566.1|Name=mRNA_L-elsbetiae_contig11815.1566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
EGWSKGDSRQKNRRSKGQNPPPRPRVDLPPYPPRYRGRGKPRQPGRAPKE
ASIGSLRETSGGSGGREMSFAYKQSSGAARKAQVLGLLHMQSTPRKAEVV
TWGYDLATPSGRRDNCATALLSLLLVVTAVTVSGLTSSMQLIYVQADLCT
TRDSKLADNVDLMRDITNYHEARAASSLAVNVTATAYFGAQEGYNSLGLR
FRWPSPYDLSEEERQ
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mRNA from alignment at L-elsbetiae_contig11815:430..3119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11815.1566.1 ID=mRNA_L-elsbetiae_contig11815.1566.1|Name=mRNA_L-elsbetiae_contig11815.1566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2690bp|location=Sequence derived from alignment at L-elsbetiae_contig11815:430..3119- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCTGGAGCAAAGGCGACAGTAGACAAAAAAACCGGCGAAGCAAAGG
TCAGAACCCCCCACCCCGGCCCCGCGTGGATCTGCCGCCGTACCCCCCAA
GGTACCGCGGGCGAGGAAAACCCAGGCAGCCAGGGCGAGCCCCCAAGGAA
GCTAGCATCGGATCTCTGCGTGAAACAAGCGGAGGGAGCGGCGGCCGAGA
GATGTCGTTTGCTTACAAGCAGTCGAGCGGTGCCGCCAGAAAGGCCCAGG
TGCTGGGCCTCCTGCACATGCAGTCGACCCCCCGGAAGGCGGAGGTCGTG
ACGTGGGGGTACGACCTCGCCACGCCCAGCGGGAGGAGAGACAACTGCGC
GACGGCGCTGCTCTCGCTGCTGCTGGTCGTCACCGCGGTAACGGTGAGTC
CTTTATCTCTTTCGTTGCTGTACATACCGGTATTTTATCTGCCATCCGAC
AATTATTGCAGATGTAAATATCCAACCAACATTTCTTCCAAACTGATGAC
GCTATTCTTACATGCTCGAGCACACTGCGTAGGTTGCACAAACCGCCAAC
ACTACCAAACAAAATGTATGTTACATATAGAAGTACTTCGTATTGTTTTT
GTATTGTTCTTTCACGGCCGTTACGAGCGGTGGTGTAACCGGCGGCGATA
CCGCCGCTCATGGCCGCAGGCAGCAACCTCACAGGTGGTCTAAAAATACC
ACCCAGAATTTACTAAAAACAAACTGGAATCTCTACGAAAACAGGATAGA
AAGTTACACTCACGTCGTACATACATACATATATCCATGAGTCTAAAAAC
TCGGGAGTTTTTCTGCGGCTCACCACAACGACGGTGCCACCGATGACGCT
GTTGGTGCGATCACTATGAAGCGTTCTTCGTCGATATATTATTAATAAAT
TGTATCTTCAATGCTAACACGAGCCCAGTAGCTCACGGGAGTAGGCTTTC
GTGTCCCTTCAAAACGCCGACACCTGGTACCTTAAGCCGAGGCGGAGGAA
CGCATCTACAGTAGCGGCGTTCACGAGACTCGTTGGCACCATTGCTGCAT
GTACATACGAAGTATGTATTTATTTTACGGTATTTTCCCGTGTATTTTAC
GGTATTCTCCGTGTATTTACCGGCCCGAGAAATTGGTTGCTTGCTTGGCC
AGGTGAGCGGGTTGACGAGCTCCATGCAGCTCATCTACGTTCAGGCGGAC
CTGTGCACCACCCGGGACAGCAAGCTCGCGGACAACGTGGACCTCATGCG
GGACATCACAAAGTAAGCCAGCCAGTCAAGCCGGCAGCCCTCGGAAAAGG
CCCCGTCGAATCGCGGGAAGAAATGGGGTTAGGGTTAGGGTTAGGGTTAT
GGTTACGATTATGGTTACGGTTACAGTTACGCCCCGTCGCACGTTGAGAA
ACAGCTACGCTACATTCGGCAAAAAGCCCCCATACATATATACATAAATC
GAAGCATGACGTCATCCCCTGAAACGGACGCCAAACCGCGGGAACCCTAC
AAATTTCGACCCTTTCTCTTCCCGAACGCACATTCAGCAAAAAGCCTCCA
TACATAAGCTCGAAGTATGTCTTCATCCCCTGAAACCGACGCCAAACCGG
GGGAACGCCTGCAAACGAACCCCCACTTTTCGTTTGACTCGGACGTACAT
CCAGCGAAAAGCCTCCTATAATTCTTCTGTGTCTTCCTCTCCTGAAACTG
ACGCCAGTCGTGGTGAACCCCTACGAATACACCCGAACCTTTTCTCTTCC
CGGACCAGTTTTGAAAGAAAAACAGTTACTCCAAAAATGGAACCTGACCC
ACATTGAGACGGGACTCCCTGAGGTTTAATCGGTATTCCATATAATGACG
TAATATTGGGCCGACCAAGTAGACAAACACCTAAAATATGGATCTTGGGA
CGGGAAGAAAGGGGTTAGTATGCCTATGTACAACAGATCCCTCTGGATTG
ATATTTTCACAGACAGGACGTAGACTGCTGACATTTGTATGTATGTAAAG
TATATATGTATGTATGTACTTCGAAGTATGTATGTATGTATGTTTGGATG
TATGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCCATCCAGCACCTC
TCAATATCCGTACTAATCCAACATTTGATGCGGTCAATTCCAGCTTATAC
CCAAGAAAGCTACACGAAAGATGTACAACAGATGCCTCTGGAACGATATT
TTCACAGTCAATTCCAGCTTGTACCCAAGAAAAGGTACACGAAAGATGTA
CTACAGATGCCTCTGGAACGACATTTTCACAGACCGGACGTAGACTGCTG
ACATTTGTACGCATTGATTAAAGATATCTCTCCCCTGCATCTTTGCTTAC
TTATTTGTTTTGGGTCCTTTTTCGTCAGTTACCAAATAGATGTCTCTGGA
ACGATATTTTCACAGACCGGACGTACATAAGACTGCTGACATTTGTATGT
ATACATTAATTAATTAATTAATTAAAGATGTTCAGAAGAATTCCCCAATC
TCCCCTGCATCTTTGATTTTTTGTATTGGGTTCTTTCTCTCTCGTCAGTT
ACCACGAGGCCAGGGCGGCATCCTCTCTGGCGGTAAACGTCACAGCGACC
GCTTACTTCGGCGCGCAGGAGGGCTACAACAGCTTGGGGCTGAGGTTCCG
CTGGCCGTCTCCGTACGACCTGTCCGAGGAGGAGCGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11815:430..3119-

>mRNA_L-elsbetiae_contig11815.1566.1 ID=mRNA_L-elsbetiae_contig11815.1566.1|Name=mRNA_L-elsbetiae_contig11815.1566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig11815:430..3119- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCTGGAGCAAAGGCGACAGTAGACAAAAAAACCGGCGAAGCAAAGG
TCAGAACCCCCCACCCCGGCCCCGCGTGGATCTGCCGCCGTACCCCCCAA
GGTACCGCGGGCGAGGAAAACCCAGGCAGCCAGGGCGAGCCCCCAAGGAA
GCTAGCATCGGATCTCTGCGTGAAACAAGCGGAGGGAGCGGCGGCCGAGA
GATGTCGTTTGCTTACAAGCAGTCGAGCGGTGCCGCCAGAAAGGCCCAGG
TGCTGGGCCTCCTGCACATGCAGTCGACCCCCCGGAAGGCGGAGGTCGTG
ACGTGGGGGTACGACCTCGCCACGCCCAGCGGGAGGAGAGACAACTGCGC
GACGGCGCTGCTCTCGCTGCTGCTGGTCGTCACCGCGGTAACGGAGGGCT
GGAGCAAAGGCGACAGTAGACAAAAAAACCGGCGAAGCAAAGGTCAGAAC
CCCCCACCCCGGCCCCGCGTGGATCTGCCGCCGTACCCCCCAAGGTACCG
CGGGCGAGGAAAACCCAGGCAGCCAGGGCGAGCCCCCAAGGAAGCTAGCA
TCGGATCTCTGCGTGAAACAAGCGGAGGGAGCGGCGGCCGAGAGATGTCG
TTTGCTTACAAGCAGTCGAGCGGTGCCGCCAGAAAGGCCCAGGTGCTGGG
CCTCCTGCACATGCAGTCGACCCCCCGGAAGGCGGAGGTCGTGACGTGGG
GGTACGACCTCGCCACGCCCAGCGGGAGGAGAGACAACTGCGCGACGGCG
CTGCTCTCGCTGCTGCTGGTCGTCACCGCGGTAACGGTGAGCGGGTTGAC
GAGCTCCATGCAGCTCATCTACGTTCAGGCGGACCTGTGCACCACCCGGG
ACAGCAAGCTCGCGGACAACGTGGACCTCATGCGGGACATCACAAAGTGA
GCGGGTTGACGAGCTCCATGCAGCTCATCTACGTTCAGGCGGACCTGTGC
ACCACCCGGGACAGCAAGCTCGCGGACAACGTGGACCTCATGCGGGACAT
CACAAATTACCACGAGGCCAGGGCGGCATCCTCTCTGGCGGTAAACGTCA
CAGCGACCGCTTACTTCGGCGCGCAGGAGGGCTACAACAGCTTGGGGCTG
AGGTTCCGCTGGCCGTCTCCGTACGACCTGTCCGAGGAGGAGCGGCAGTT
ACCACGAGGCCAGGGCGGCATCCTCTCTGGCGGTAAACGTCACAGCGACC
GCTTACTTCGGCGCGCAGGAGGGCTACAACAGCTTGGGGCTGAGGTTCCG
CTGGCCGTCTCCGTACGACCTGTCCGAGGAGGAGCGGCAG
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