mRNA_L-elsbetiae_contig1181.1563.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1181.1563.1
Unique NamemRNA_L-elsbetiae_contig1181.1563.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1181.1563.1 vs. uniprot
Match: D7G0R7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.160e-17
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 2 
Query:    5 HDREKVVTVVVSSVDADQVEIVEVSRAVVVDENGFEIQLPTTVPPAVLGLEVMEGFSDHGSCYDGGDDASGPIHSPVALA 244
            +DREKVVTV+V+ V+ADQVEIVEVSRAV +DE G EI   TT   AV+GLE+ME FSDH S    G  A+ PIHSP A+A
Sbjct:  386 YDREKVVTVIVTGVEADQVEIVEVSRAVALDEAGVEIPAMTT---AVVGLEIMEDFSDHESMD--GRVATSPIHSPAAMA 460
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BLAST of mRNA_L-elsbetiae_contig1181.1563.1 vs. uniprot
Match: A0A6H5JA45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA45_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.010e-14
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 2 
Query:    5 HDREKVVTVVVSSVDADQVEIVEVSRAVVVDENGFEIQLPTTVPPAVLGLEVMEGFSDHGSCYDGGDDASGPIHSPVALA 244
            +DREKVVTV+V+ V+ADQVEIV+VSRAV VDE G  I   TT    V+GLE ME  SDH S    G  A  PIHSP A+A
Sbjct: 1338 YDREKVVTVIVTGVEADQVEIVQVSRAVAVDEAGVAIPAMTT---GVVGLETMEDLSDHESLD--GRGAMSPIHSPAAMA 1412
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1181.1563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R7_ECTSI2.160e-1763.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA45_9PHAE1.010e-1460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1181contigL-elsbetiae_contig1181:7803..8777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size213
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1181.1563.1prot_L-elsbetiae_contig1181.1563.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1181 7993..8777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.5065098-UTR-L-elsbetiae_contig1181:7802..79921622815384.5065098-UTR-L-elsbetiae_contig1181:7802..7992Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1181 7803..7992 -
1691682871.8017044-UTR-L-elsbetiae_contig1181:7802..79921691682871.8017044-UTR-L-elsbetiae_contig1181:7802..7992Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1181 7803..7992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.5214295-CDS-L-elsbetiae_contig1181:7992..81091622815384.5214295-CDS-L-elsbetiae_contig1181:7992..8109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1181 7993..8109 -
1691682871.8121405-CDS-L-elsbetiae_contig1181:7992..81091691682871.8121405-CDS-L-elsbetiae_contig1181:7992..8109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1181 7993..8109 -
1622815384.5316641-CDS-L-elsbetiae_contig1181:8681..87771622815384.5316641-CDS-L-elsbetiae_contig1181:8681..8777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1181 8682..8777 -
1691682871.8219566-CDS-L-elsbetiae_contig1181:8681..87771691682871.8219566-CDS-L-elsbetiae_contig1181:8681..8777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1181 8682..8777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1181.1563.1

>prot_L-elsbetiae_contig1181.1563.1 ID=prot_L-elsbetiae_contig1181.1563.1|Name=mRNA_L-elsbetiae_contig1181.1563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
GPRQGEGGDGGGVERGRRSSGDRGGFSRRGCRREWIRDSASDNRTTSGVG
TGSNGGILRPWILLRRGRRC*
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mRNA from alignment at L-elsbetiae_contig1181:7803..8777-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1181.1563.1 ID=mRNA_L-elsbetiae_contig1181.1563.1|Name=mRNA_L-elsbetiae_contig1181.1563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=975bp|location=Sequence derived from alignment at L-elsbetiae_contig1181:7803..8777- (Laminarionema elsbetiae ELsaHSoW15)
GGGCCACGACAGGGAGAAGGTGGTGACGGTGGTGGTGTCGAGCGTGGACG
CCGATCAAGTGGAGATCGTGGAGGTTTCTCGCGCCGTGGTTGTCGAGTGA
GTGTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACTACTGTTGTTTT
TTTTCTTCTCCGCCAATTATTGGCTTATTCGTCGTCTGCCCCACTGGCCC
CCTTCCTCCACTACGACTAGCCCAGCCAGGGTCGCACAGGAGGGGGGGGG
GGTGGACCCCCTCCTGCGGCGCCTGCCTGTGATGTTTTTATCGCAATGTG
TGTGTGTGTGTGTTTGTGTGTGTGTTTTGCCGTCGCTGTTGCTCGTCGCT
CACACTTTTTCGTGGGCTTTTTTCTCGATTTTTTGTGTCTGTTGATGAGT
TATGAGATTTTTTTATGCTTTTCGTCCTTTACTTTTGCTGCCTTTTTTGC
AAATTCATGTACATAGATACCCATGTGCAATAATGATAGGTACATGCATG
CTGCGCAAAAGCAAGATTTTCGGGGCAAGATCGAAATAGTCTCTGCATCT
TTGCACAAACATAGAATGTCCTCCTTTATCTCTTGTCAGTCCTGACTCCC
TTCTTTCTCCCCCTCACGCCCTGCCCCCCCCCTGTTTCACTCTCGACCCG
GTTGCTTGTGATCTCCAGCGAGAATGGATTCGAGATTCAGCTTCCGACAA
CCGTACCACCAGCGGTGTTGGGACTGGAAGTAATGGAGGGATTCTCAGAC
CATGGATCTTGCTACGACGGGGGAGACGATGCTAGCGGTCCGATCCATTC
CCCGGTTGCCTTGGCTTAGTTCGGTGACTTAACTCCGAAGTGTGGAAGGA
AGGGGGAAGGACCTGGGCTCTGAGCAGACCCATCCCAGCGAGAGGTGCTG
GCCCCATCTAGTCCTCTTTTTGGGCAGTGAGCTACATAGCTGGCTGCGTT
TTTTGGACTGCTCTTGGCGACCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1181:7803..8777-

>mRNA_L-elsbetiae_contig1181.1563.1 ID=mRNA_L-elsbetiae_contig1181.1563.1|Name=mRNA_L-elsbetiae_contig1181.1563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig1181:7803..8777- (Laminarionema elsbetiae ELsaHSoW15)
GGGCCACGACAGGGAGAAGGTGGTGACGGTGGTGGTGTCGAGCGTGGACG
CCGATCAAGTGGAGATCGTGGAGGTTTCTCGCGCCGTGGTTGTCGAGGGC
CACGACAGGGAGAAGGTGGTGACGGTGGTGGTGTCGAGCGTGGACGCCGA
TCAAGTGGAGATCGTGGAGGTTTCTCGCGCCGTGGTTGTCGACGAGAATG
GATTCGAGATTCAGCTTCCGACAACCGTACCACCAGCGGTGTTGGGACTG
GAAGTAATGGAGGGATTCTCAGACCATGGATCTTGCTACGACGGGGGAGA
CGATGCTAGCGAGAATGGATTCGAGATTCAGCTTCCGACAACCGTACCAC
CAGCGGTGTTGGGACTGGAAGTAATGGAGGGATTCTCAGACCATGGATCT
TGCTACGACGGGGGAGACGATGCTAG
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