mRNA_L-elsbetiae_contig118.1552.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig118.1552.1
Unique NamemRNA_L-elsbetiae_contig118.1552.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A6H5J7C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.470e-47
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:    1 AAARFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHILKA 246
            A  RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTP+MVNIYHQQLS CVVQYVEKEADTATHILK+
Sbjct:  112 AFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPTMVNIYHQQLSYCVVQYVEKEADTATHILKS 193
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BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: D7FWJ6_ECTSI (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B\' beta isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ6_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.840e-45
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:    1 AAARFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHILKA 246
            A  RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTP+MVNIYHQQLS CVVQYVEKEADTATHILK+
Sbjct:  331 AFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPTMVNIYHQQLSYCVVQYVEKEADTATHILKS 412
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BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A7S0GE31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GE31_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.030e-31
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHIL 240
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH+ FL   L+PLH P  V +YHQQLS C++QYVEK+ADTAT IL
Sbjct:  219 RFVYESERHNGIGELLEILGSIINGFAIPLKKEHLQFLVRALIPLHKPKCVGLYHQQLSYCIIQYVEKDADTATPIL 295
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BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A7S1FZ03_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ03_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.700e-31
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHIL 240
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH+ FL   L+PLH P  V +YHQQLS C++QYVEK+ADTA HIL
Sbjct:  281 RFVYETERHNGIGELLEILGSIINGFAIPLKKEHLQFLVRALIPLHKPKCVGLYHQQLSYCIIQYVEKDADTAIHIL 357
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BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A7S1Y370_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y370_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.440e-31
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHIL 240
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH+ FL   L+PLH P  V +YHQQLS C++QYVEK+ADTAT IL
Sbjct:  228 RFVYETERHNGIGELLEILGSIINGFAIPLKKEHLQFLVRALIPLHKPKCVALYHQQLSYCIIQYVEKDADTATPIL 304
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BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A6S9GHG6_HETAK (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GHG6_HETAK)

HSP 1 Score: 122 bits (305), Expect = 3.680e-31
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHILK 243
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEHV FLQ  L+PLH P  V +YHQQLS CVVQYVEK+ADT   +L+
Sbjct:  187 RFVYETERHNGIGELLEILGSIINGFAIPLKKEHVQFLQRALVPLHKPKCVAMYHQQLSYCVVQYVEKDADTGVPVLQ 264
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BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A7S2PFY6_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PFY6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.920e-31
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHIL 240
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH+ FL   L+PLH P  V +YHQQLS C++QYVEK+ADTAT IL
Sbjct:  250 RFVYETERHNGIGELLEILGSIINGFAIPLKKEHLQFLVRALIPLHKPKCVGLYHQQLSYCIIQYVEKDADTATPIL 326
[Close]
BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A7S4JT48_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=3 Tax=Odontellaceae TaxID=2749909 RepID=A0A7S4JT48_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.340e-31
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHIL 240
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH+ FL   L+PLH P  V +YHQQLS C++QYVEK+ADTAT IL
Sbjct:  281 RFVYETERHNGIGELLEILGSIINGFAIPLKKEHLQFLVRALIPLHKPKCVGLYHQQLSYCIIQYVEKDADTATPIL 357
[Close]
BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: K0SQ30_THAOC (Serine/threonine protein phosphatase 2A regulatory subunit n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SQ30_THAOC)

HSP 1 Score: 122 bits (306), Expect = 6.580e-31
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHIL 240
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH+ FL   L+PLH P  V +YHQQLS C++QYVEK+ADTAT IL
Sbjct:  284 RFVYETERHNGIGELLEILGSIINGFAIPLKKEHLQFLVRALIPLHKPKCVGLYHQQLSYCIIQYVEKDADTATPIL 360
[Close]
BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Match: A0A7S2V448_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V448_9STRA)

HSP 1 Score: 121 bits (304), Expect = 7.250e-31
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:   10 RFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHTPSMVNIYHQQLSSCVVQYVEKEADTATHILK 243
            RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH  FLQ  L+PLH P  VN+YHQQLS C+VQYVEK+ DTA  +L+
Sbjct:  228 RFVYETERHNGIGELLEILGSIINGFAIPLKKEHKVFLQRALIPLHKPKCVNMYHQQLSYCIVQYVEKDVDTAVPVLQ 305
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig118.1552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7C6_9PHAE2.470e-4793.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWJ6_ECTSI2.840e-4593.90Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
A0A7S0GE31_9STRA1.030e-3174.03Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1FZ03_9STRA1.700e-3174.03Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S1Y370_9STRA2.440e-3174.03Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A6S9GHG6_HETAK3.680e-3174.36Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S2PFY6_9STRA4.920e-3174.03Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S4JT48_9STRA6.340e-3174.03Serine/threonine protein phosphatase 2A regulatory... [more]
K0SQ30_THAOC6.580e-3174.03Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S2V448_9STRA7.250e-3173.08Serine/threonine protein phosphatase 2A regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig118contigL-elsbetiae_contig118:55743..56989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue4.8e-38
Seed eggNOG ortholog2880.D7FWJ6
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377
EggNOG free text desc.protein phosphatase regulator activity
EggNOG OGsKOG2085@1,KOG2085@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815382.60961-CDS-L-elsbetiae_contig118:55743..558771622815382.60961-CDS-L-elsbetiae_contig118:55743..55877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig118 55744..55877 -
1691682871.199576-CDS-L-elsbetiae_contig118:55743..558771691682871.199576-CDS-L-elsbetiae_contig118:55743..55877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig118 55744..55877 -
1622815382.62086-CDS-L-elsbetiae_contig118:56877..569891622815382.62086-CDS-L-elsbetiae_contig118:56877..56989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig118 56878..56989 -
1691682871.2115843-CDS-L-elsbetiae_contig118:56877..569891691682871.2115843-CDS-L-elsbetiae_contig118:56877..56989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig118 56878..56989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig118.1552.1prot_L-elsbetiae_contig118.1552.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig118 55744..56989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig118.1552.1

>prot_L-elsbetiae_contig118.1552.1 ID=prot_L-elsbetiae_contig118.1552.1|Name=mRNA_L-elsbetiae_contig118.1552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
AAARFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVDFLQVCLLPLHT
PSMVNIYHQQLSSCVVQYVEKEADTATHILKA
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mRNA from alignment at L-elsbetiae_contig118:55743..56989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig118.1552.1 ID=mRNA_L-elsbetiae_contig118.1552.1|Name=mRNA_L-elsbetiae_contig118.1552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1247bp|location=Sequence derived from alignment at L-elsbetiae_contig118:55743..56989- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCCGCCAGGTTTGTGTACGAGTGCCCGCGACACAACGGGATCGGGGA
GTTGCTGGAGATCCTGGGAAGCATCGTGAACGGGTTCGCGACCCCCTTGA
AGAAGGAGCACGGTGAGCACGCAGACGGGATCGGGAGGGAGGGAAGGAGA
AAGGGGTGGCGTGCGAGGAACCAATTCGCCCACGGGGTCCCGTCTCTAAA
AATAACGTGGAGAGACCCGCGCACAAAGCGAAAGCGGGGCTCGTTGGGCA
GGCAGGCGAGGCGGGAGGGGTGTGTGAGAGGGGACGGAGAAAGGAAGGGA
AGGAGGCGTTTGTCTCGCCATTCGTTGCTCGTGGTGGCTTTGGGGTGCTT
TTCTCGGGATTGGCTCGGCAGGCGAGAAGGACGTGCGAGGAAGGGAGGGA
GGAGGGATGCAGTTGGCTCGCCGTTCGATGCCTGTTTTTTTTTTTGTTCT
TTCCTTTATTTACTTATTTAGTCGTCGTCTGCCCCCGCTGGCCCCCTTCC
TCCACCACTACGACTGGCTAGACGACCGAACCGGGGCCACACTGCTTGTG
GTAGTGTAGCGGTTTTGATCGGGGTTTGCCGGGCAAGCTGGAGGGGGATG
CGAGGATGTATGGAAGGGAGACGGTTTGCTCGCCATCGTGGCTCGTGTTG
TGGTTCTCAACAATTTTCTAACTACGAAGCATCAGCTAATTACTCTATTT
GTAAACGTTTCACGAATGTGTTCACAGGGAAAAAACGTCGTTCCACAGGG
GGACTGCTGTTGTAGACACACTAATCCTCACTCAACCGCGCTGGTTTTCC
TGGTTTTGTTCCGGAGCTTCTTGGACCCCTTGTTCATGACACACGTCACG
CCCCTTTTCCTCCCTCCCCCTCCCGCCTGTTTTTTTTTTTTTTTTTTTTT
TTTTGTTTTTTTTTTTTCTTGTTGTTTTTTTTTTTTTTTTTCTTTTTCCC
CTTCCCCCGCCNNNNNNNNNNAAAAACGCGTCGTGCGGGGGGGGGTTTGT
TTTGGAACCCCCCCCCCCCCCCCCCCCCCCCGGTTTTTTTCCCTTTTTTC
CCCCCCCCCCCCCCCGCCTGTTTTTTTTTTTTTTTTTTTTTCGTCGTTGT
CGATGCTACTAGTGGACTTTTTGCAGGTGTGCCTGCTGCCCCTGCACACG
CCCTCCATGGTTAACATCTACCACCAACAGCTGAGCTCCTGCGTAGTGCA
ATACGTGGAGAAGGAAGCGGACACGGCGACACACATCCTCAAGGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig118:55743..56989-

>mRNA_L-elsbetiae_contig118.1552.1 ID=mRNA_L-elsbetiae_contig118.1552.1|Name=mRNA_L-elsbetiae_contig118.1552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig118:55743..56989- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCCGCCAGGTTTGTGTACGAGTGCCCGCGACACAACGGGATCGGGGA
GTTGCTGGAGATCCTGGGAAGCATCGTGAACGGGTTCGCGACCCCCTTGA
AGAAGGAGCACGGCTGCCGCCAGGTTTGTGTACGAGTGCCCGCGACACAA
CGGGATCGGGGAGTTGCTGGAGATCCTGGGAAGCATCGTGAACGGGTTCG
CGACCCCCTTGAAGAAGGAGCACGTGGACTTTTTGCAGGTGTGCCTGCTG
CCCCTGCACACGCCCTCCATGGTTAACATCTACCACCAACAGCTGAGCTC
CTGCGTAGTGCAATACGTGGAGAAGGAAGCGGACACGGCGACACACATCC
TCAAGGCATGGACTTTTTGCAGGTGTGCCTGCTGCCCCTGCACACGCCCT
CCATGGTTAACATCTACCACCAACAGCTGAGCTCCTGCGTAGTGCAATAC
GTGGAGAAGGAAGCGGACACGGCGACACACATCCTCAAGGCA
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