mRNA_L-elsbetiae_contig1179.1542.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1179.1542.1
Unique NamemRNA_L-elsbetiae_contig1179.1542.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1179.1542.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.230e-42
Identity = 98/207 (47.34%), Postives = 132/207 (63.77%), Query Frame = 3 
Query:    3 LRSALDNGGKDLQNLIRKRNRQLKGDICLRAKLSSIEAKIQSFIPGKLIVIFQLMLPETSRGSRQLVLLIIMCVAAPFLNWAGSLVTTEKPNSEDPRSTYRKSRASFFLGAPALFFWGVGTSGIGGV--LNWDESLSAALLAVATIIIPAVDAFLNSQRIELWYENLSCQKQRFVCKARRQWRRKEKRPSPLDRKGGVPPVRHEMAH 617
            + +AL    + +   + +R+++LK  I L  + S+IE+KIQSFIPGKLIVIFQL+LPE    S +L LLIIM   AP L+WA  LV  EKP S + R    +S  S FL APA+FFWG+GTS +G    + W++S +AA LAVATIIIPA+DAF NS+++E WY+  SCQ+ RF  +A  +W +K  + SP     G        AH
Sbjct:  441 METALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVG-SSDKLTLLIIMSAIAPGLSWAAGLVAREKPGSTEKR----RSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDKWSCQRWRFSQRAHAKWVKKHGKVSPAAAAAGPRATDSSKAH 642
[Close]
BLAST of mRNA_L-elsbetiae_contig1179.1542.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 5.550e-31
Identity = 79/158 (50.00%), Postives = 105/158 (66.46%), Query Frame = 3 
Query:   12 ALDNGGKDLQNLIRKRNRQLKGDICLRAKLSSIEAKIQSFIPGKLIVIFQLMLPETSRGSRQLVLLIIMCVAAPFLNWAGSLVTTEKPNSEDPRSTYRKSRA---SFFLGAPALFFWGVGTSGIGGV-LNWDESLSAALLAVATIIIPAVDAFLNSQR 473
            AL  G  D++ L   R  QLK D+  R+KLS+++AKI+ FIPGKL+V+FQL+LP+ + G RQL+LL IMC  AP +     L TT   +  D + T  K+R+   S  LGAPA+FFWGVGTS +G   L W  SLSA  +A AT+ IPAVD+F NS++
Sbjct:  416 ALARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEG-RQLILLYIMCALAPLVK----LATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRK 568
[Close]
BLAST of mRNA_L-elsbetiae_contig1179.1542.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 7.370e-27
Identity = 68/150 (45.33%), Postives = 95/150 (63.33%), Query Frame = 3 
Query:   27 GKDLQNLIRKRNRQLKGDICLRAKLSSIEAKIQSFIPGKLIVIFQLMLPETSR-GSRQLVLLIIMCVAAPFLNWAGSLVTTEKPNSEDPRSTYRKSRASFFLGAPALFFWGVGTSGIG-GVLNWDESLSAALLAVATIIIPAVDAFLNSQ 470
            G  +  L++++   LK D+  R   S++ AKIQ+FIPG LIVIFQL+LPE    G   L LL+++C  APF +W  ++     P   + R+  R++ A +FL  PA+FFWGVGTS I     NW ES SAA LAVATI+IPA+D + + +
Sbjct:  341 GTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRA--RQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGR 488
[Close]
BLAST of mRNA_L-elsbetiae_contig1179.1542.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.160e-24
Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 3 
Query:    3 LRSALDNG-GKDLQNLIRKRNRQLKGDICLRAKLSSIEAKIQSFIPGKLIVIFQLMLPETSR-GSRQLVLLIIMCVAAPFLNWAGSLVTTEKPNSEDPRSTYRKSRASFFLGAPALFFWGVGTSGIG-GVLNWDESLSAALLAVATIIIPAVDAFLNSQ 470
            LR A+++  G  +  L+R++   LK D+  R   S++ AKIQ+FIPG LIVIFQL+LPE    G   L LL+++C  APF +W  ++     P + + R++            PA+FFWGVGTS I     NW ES SAA LAVATI+IPA+D + + +
Sbjct:  214 LRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRAS------------PAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGR 360
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1179.1542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBB0_9PHAE3.230e-4247.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN08_ECTSI5.550e-3150.00Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KM21_9PHAE7.370e-2745.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWX2_ECTSI1.160e-2442.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1179contigL-elsbetiae_contig1179:7823..13837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons8
Model size1556
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1179.1542.1prot_L-elsbetiae_contig1179.1542.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1179 10120..13027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815381.42359-UTR-L-elsbetiae_contig1179:7822..78961622815381.42359-UTR-L-elsbetiae_contig1179:7822..7896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 7823..7896 +
1691682870.4416676-UTR-L-elsbetiae_contig1179:7822..78961691682870.4416676-UTR-L-elsbetiae_contig1179:7822..7896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 7823..7896 +
1622815381.4366956-UTR-L-elsbetiae_contig1179:9637..97151622815381.4366956-UTR-L-elsbetiae_contig1179:9637..9715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 9638..9715 +
1691682870.4498696-UTR-L-elsbetiae_contig1179:9637..97151691682870.4498696-UTR-L-elsbetiae_contig1179:9637..9715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 9638..9715 +
1622815381.45024-UTR-L-elsbetiae_contig1179:10107..101191622815381.45024-UTR-L-elsbetiae_contig1179:10107..10119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 10108..10119 +
1691682870.4579916-UTR-L-elsbetiae_contig1179:10107..101191691682870.4579916-UTR-L-elsbetiae_contig1179:10107..10119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 10108..10119 +
1622815381.5553772-UTR-L-elsbetiae_contig1179:13027..138371622815381.5553772-UTR-L-elsbetiae_contig1179:13027..13837Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 13028..13837 +
1691682870.5346859-UTR-L-elsbetiae_contig1179:13027..138371691682870.5346859-UTR-L-elsbetiae_contig1179:13027..13837Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 13028..13837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815381.4675102-CDS-L-elsbetiae_contig1179:10119..102591622815381.4675102-CDS-L-elsbetiae_contig1179:10119..10259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 10120..10259 +
1691682870.4665236-CDS-L-elsbetiae_contig1179:10119..102591691682870.4665236-CDS-L-elsbetiae_contig1179:10119..10259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 10120..10259 +
1622815381.4823117-CDS-L-elsbetiae_contig1179:10672..108391622815381.4823117-CDS-L-elsbetiae_contig1179:10672..10839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 10673..10839 +
1691682870.4766622-CDS-L-elsbetiae_contig1179:10672..108391691682870.4766622-CDS-L-elsbetiae_contig1179:10672..10839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 10673..10839 +
1622815381.5032954-CDS-L-elsbetiae_contig1179:11164..111871622815381.5032954-CDS-L-elsbetiae_contig1179:11164..11187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 11165..11187 +
1691682870.486033-CDS-L-elsbetiae_contig1179:11164..111871691682870.486033-CDS-L-elsbetiae_contig1179:11164..11187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 11165..11187 +
1622815381.5194793-CDS-L-elsbetiae_contig1179:12037..120701622815381.5194793-CDS-L-elsbetiae_contig1179:12037..12070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 12038..12070 +
1691682870.4983313-CDS-L-elsbetiae_contig1179:12037..120701691682870.4983313-CDS-L-elsbetiae_contig1179:12037..12070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 12038..12070 +
1622815381.5328448-CDS-L-elsbetiae_contig1179:12530..126561622815381.5328448-CDS-L-elsbetiae_contig1179:12530..12656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 12531..12656 +
1691682870.5126677-CDS-L-elsbetiae_contig1179:12530..126561691682870.5126677-CDS-L-elsbetiae_contig1179:12530..12656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 12531..12656 +
1622815381.544258-CDS-L-elsbetiae_contig1179:12934..130271622815381.544258-CDS-L-elsbetiae_contig1179:12934..13027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 12935..13027 +
1691682870.5246866-CDS-L-elsbetiae_contig1179:12934..130271691682870.5246866-CDS-L-elsbetiae_contig1179:12934..13027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 12935..13027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1179.1542.1

>prot_L-elsbetiae_contig1179.1542.1 ID=prot_L-elsbetiae_contig1179.1542.1|Name=mRNA_L-elsbetiae_contig1179.1542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MLPETSRGSRQLVLLIIMCVAAPFLNWAGSLVTTEKPNSEDPRSTYRKSR
ASFFLGAPALFFWGVGTSGIGGVLNWDESLSAALLAVATIIIPAVDAFLN
SQRIELWYENLSCQKQRFVCKARRQWRRKEKRPSPLDRKGGVPPVRHEMA
HILRHSDVEAPKWDALEESTSHGNLDKPHPLSPHPETKEDEEG*
back to top

mRNA from alignment at L-elsbetiae_contig1179:7823..13837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1179.1542.1 ID=mRNA_L-elsbetiae_contig1179.1542.1|Name=mRNA_L-elsbetiae_contig1179.1542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6015bp|location=Sequence derived from alignment at L-elsbetiae_contig1179:7823..13837+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTGCGGTCGGCCCTCGACAACGGGGGCAAAGACCTGCAGAACCTCATC
CGAAAGAGGAACCGCCAGCTGAAGGCAAGCTTATACATACATATACAAAT
TGGTGTCTGGGAACTTCTGTTCCGAAATCTGAATCAGTAGGCTGTCGGTA
GGCTGTCGACCTCCAATAGCCCAAACAAGCGTTAAGATGACAGCAGCTGT
CTTTTTTCAGTTGTACAAAAACACGTCAGCAGCAGTTGTCTTTTTTCGCT
GAGGGGCACAGACCTGCACAGCTGTGTTGACAAGGGCGGAGCGTCTTAAT
CAAGGGCGGAGCGTCCGCACAGAAGCACCCACAACCCGCATAAGTCGTTG
ATAGTCGAGAAACCATATACACACCGAAAAGCTTCGAGCATGGTCCGCAC
GCCCCGCACCGAAAAAAACAAAAGTAGCAGCTGCTGTGTTTCAACCTCGA
AGCAGCAGCTGCTGTGCATACTGAAACAAACAGCTGCTTCTTTTCTGTGC
TGACACTCCCTTGAACCAAACATAGCTGTGCTGGTCTGTACTCATCGGGT
ACAATAGCTGTCCAGTCTCCTGGCATGTGCTGCCATGCTCAAAACAGCTG
CTGTCATACCGACGTTTTTTCTGCTATTGGAAGCCGATAGCCCACTAGAT
TCAGAATCGGAACAGTAGTTCCGAGACTCCACTCAGCCGTTTTTTTTTTT
GTATTTTTCAGTTGTCAATTTAGGAATCCTTCTGCAGCCTTCGTCTGTTT
CCTTTCGTCTGGCATCAACCCCTGCCGCTGTGCTCTCATGAGCTCGCTCC
GAAGGGGGATCTTGTACTCTATATAGCATGGATAACGCTTTTTCGTTTTC
GTCGTTCTCATCCAGCTGCCCGTTTCCAAATGGAGTTTGGGGTTGATGCT
GCCTTGGTACTGCGCGCGTTCGTTTGGCGCGGCCTTTTGATTTCTGGCGC
GCTGTGTGCCCTCTCGCACAGACTCATGCCCTTTTCCGAGACTTTTCTCA
ACAGACAACGGTTTCGGGTGCTATGTTTACCAGCCCAGCGTGCTGTAACG
ACAACGCGGTTGCCGATCGTTTCTGCTGCTTTTGTTCTCACGGAATATAG
TATACTTCGAAGTATATAGGTTGCAGATACGGATTCGGGAAAGTCAAGGG
GCAGAACATAGCCTGTTGATGTTGGAGTTTTTCCTATGAAGATGCGGAAA
CCGCCAGATACTCGAAGGACGGGGGGTATTTGTTTTTGTTCCGAGTTGCG
CTTCCCGAGCGATCTGTATTTCCAGTTGGACTTGCTGCATACATACTCCG
ATAACGTGGTCCCTCTGATCGAGCGTTGATTTCGGCGCTCTCGCCTTGAA
GATCTCGCTTTCCCGAGGGCTTCATTTGCCCACACCAACGTCGTTCGGTT
CCCATTTGCTGGCGGTAGTCGTCCCCGGCTTACCTTTCATCCCATTCACT
GAGCAACGGCATTTCCGCCCCAAAAGCACTGATCACTATGGCCGATGTGC
GCCCCTGATCGAAATGCCTCTCTTGCAGTCCAGCAGACTTATGCCATTAT
TCTCGATCCCCCTTGTAAGGAGATGTACCCGCCTTTGGATGCCTCCGTTG
CCCTTCAAGAGTTGACCGCCTCGGTCAACCCACCTGCGCTAGTTGGGTTG
AGATATATCTCCCCGGTCCATTACGCAGAACAGCGACGCCGAAGACTTGT
TGAGGACCCCTGCCTCCGAGGAATATTTCTTGTCGAAACAGTGGCATTCA
CCCCGTGCGGCTTTTTCCTCAGTCCGTCCCCAGTAACACCTTTTTGTTTC
CTTTGCCGCTGACAGGGAGACATTTGTCTACGAGCGAAGCTGTCCTCCAT
CGAAGCTAAAATTCAAAGCTTCATACCGGGCAAGCTCATCGTTGTAAGTG
TTGTCGCGTGCGTGGGTTTGTCTCCGTCGAAGCAGTTATTTCCGCAAACG
GGAGTGCTTTTGGGAGTCGATGTTTCGGATTGTGACGGTGTACTGTGCTT
TCCCTTGTGTGGAAAGCCCTCTGTTATGGGGTCGACGCTGCTGTGCTCAA
TGGCGTGTCGCTCTGTGCTTCCGAAGGTGCCGCTCAAGTCAACTAAACAC
CCACCAAGCACCACACAACACCGCCGTGTGGCTTCAGTCATCCTCCCGAG
CGCATATCCGTTCCCTTTTGTGCCAGTTGCCCCGCCGTGCTCGCACCACC
GCCCCTCCCATATAGCTCAACTTAATGCTTTTGCCTTTTTGCTTCCCGGC
TCCCCTGCCGCGCTATCGCGTTCTTCCGCTGCCAGATTTTTCAGCTGATG
CTCCCCGAGACAAGCCGTGGGAGCCGACAGCTGGTTCTGCTCATCATAAT
GTGTGTCGCGGCCCCGTTCTTGAATTGGGCCGGTTCGCTCGTGACCACGG
AGAAGCCGAACTCTGAGGACCCCCGGTCGACGTACAGGTACCATGCCGAT
TCACCGTGACCCCTTCGTTTGCAGCGCGGCCGTTGGTGCTGCACTCCCGA
TCGTCCCCACATGTGTGCGTCTCGTCTTTCGGTTGCATCCGGCGGTTGGC
TGTGTGGCCCCTCAAGTAGCAGGAAAAGGATGATTTTTTCACTTAGTCAT
CATCACCACAGTCAGCAGCTTCACTGTGTGTTTTCCGCTTTTCCTCGGGT
AGTTCTCGGCCCCCTGCGCACAGCGGGCAGGCGCGATTCGTCGCCGCTCT
TGAGCAAGTCAGTACTCTTTTCGGGGTAGGCTGGCGGCGCGCGCAGCCTA
CGTGACGTCGCGGTAAGCCTCGTACTCTCCCCCGATTCGCCACCAAGCGC
TCTTGTTCGATTGTCAATGTCTGTTCTCTTAAAACCACACGGTTTCGCAG
GAAGTCGCGCGCGAGCTTCTTCCTGGGGGCCCCTGCGCTATTTTTTTGGG
GTGTGGGCACAAGCGGCATCGGAGGAGTGCTCAACTGGGACGAGTCTTTG
TCCGCAGCTCTGCTGGCGGTGGCTACGATCATCATCCCCGCGGTCGACGC
TTTTTTAAACTCTCAGAGTGAGCTTCTGGAACGATTTGTAGCTCTCGGGC
TGTGACATATCAGGGGGGAAAGGCTTGACGGCGTGCGTTTCGTGCCCGAT
TTCCGAAGCACGTATCCATGTGTCGCCGCGCACCCAAGAGGGCCACAGTA
GTAACCCGCAGTCAAGCTTGCAGGCACGCCGAAAATGCTTCCTTGTTATG
CTTGCCTCCTGCTCGCTGCTTCGTGTTATTTCTTCCTTTAAAACCTCATC
ACCGCTTCCATACCATTGTTCGCTGTTTGTTTCGGCGCCGCTCGCTGCCA
TCGTGGGGTGCTGCTTCTTCTCCTCGCCTCTGCTGACGTCAGGAATCGAG
CTGTGGTACGAAAATGTAAGCGCGTCAGAAGAGAAGTTCGTGAATGGTGT
GGACGAAACCGTGCTTCGGCATTGTTTTTTTTTTTTTTCCTCCCATTGTT
GGCATATTTGTCGTCTGCCCCACTGGCCCCCTCCCTGCACTACGACTAGC
TAGACGACCCAACAGGGGTGGGGGTTGGACCCCCTCCTGCGGTGCCTACC
TTAGATGTTTTTCATCGCGAGCAGGGTTCAGCACTCCCCACCCTCGTCAA
CAGCGAAGTCGAAGCATGTGGCCCCGTGAGGCTAGAGTGGGGTCTACAGA
AGTTGGCCGTTGAACGTTAAGGTGCCGCGGCAAAAAGAGTGCTCACAGAG
GCTTTGTTCGAATATTTTCGACAACAAGTCATCCTGATAGCAACCTTTTT
CCAAGTGTACCCGGGCGGTGCCGATACGCGAATGCTCACGTACTGTTCGC
CTCACAATGCATTTGGGTATGTTTTTGAGAACCAGTAGAAATAACCGACA
ATGCCGTATTTGGTTAAGAATTTTGCTGTTTTTTTTTTACTTCGCCTGAT
AGCAGTCAGAGCAGGGAAAGCTAGTTCAGAAATGCACCACGATCGATTGA
CGAGGTTTATGTTCTTAGTGGGGATTTGGGCCGTCTCAAACCTGCCATGC
ATCCACCCATCATATCGTTCGCCAAGGCCAACACCGGCCAACACGCTGCG
CCCCGTCCACACTACTGCCATGCCCTTTTGTACCCCACCGCCATTTCACC
GCTCGGTGGTACATACTGTGACGTTCCGTTTCGGGTGACACTAACATGGT
TCTCTTTCCACGGTATGCTTTGCTCGGCTCCCGTACACGCGCTCCCGTGG
GATGGTGCCCTCAAGCTGTCGTGCCAGAAGCAGCGGTTCGTCTGCAAGGC
AAGTACTAAGAATGGTAGTGTAAAGCTGGCCTCCGGGTGGAAGTGCAGAA
GATTTAGGAGAGGATTGTCTGTATTTTGGGTCATGGTAGAATTCGGAATT
CCGAAAAGTCTTCAAACACAATTCCAAAGAAACGTTGCTTGCCTTCAAAC
ATCCCGGGGTAAACTTCATCAACAGGAGCAAACAAACCAGAGGTGATGGG
CATCTCAGAAGTCGAGCAGTATTGTTTTTTTCTTGAACGGTGGAGATACT
CAGATATTCGCACCTTCCCTAAATTCTGGGGGGGGGGGTGCCTAGGGACT
CTCCTGGCCACTCATGCATAAAGACATGTCTGTCGGCATCAGTCTAGTCT
TGAGGTCCGGTATTCTGCACGTGCGCCAACCTTTTTGGGTCTGATTCTCG
GCATCACCTGCCCCACCCACCCAACCAAACGTGTGATGGTTCCCTGTTTT
GTAAACAGGCGAGACGCCAATGGCGTCGGAAGGAGAAGCGCCCGTCCCCT
CTCGATAGGAAGGGGGGCGTGCCGCCCGTGCGCCACGAAATGGCTCACAT
ACTACGCCACAGCGATGTTGAAGCTCCAAAATGGGTGAGGAAAGGGTGCT
CGCTGCCCACTGGATGCTCCTAGGCGCGCTTTTTTCACACACGCGGAGCC
CCCATGCAACCCTGAACTTTGTGTGGTGATTGCAGAACGCGCACCGGTGC
CACGACGAAGCCTGGGAGGGACTAACTACTATTTATGGAAGAAGTCTGCA
TTCGAAGTAGTAACGTCCACTATGTGCTCACCCCGCCTTGAGCACAACGA
TTGCGCGGGGGGCAGCCCTGATATTGACTGATGTCTTTCGTCGTTTCTCG
TTTGCCGCACAGGATGCGCTGGAAGAATCAACGTCTCATGGAAATCTAGA
TAAGCCACATCCGTTGAGCCCACACCCCGAGACGAAGGAAGACGAAGAAG
GTTAATTCGTTGGCATGACTGCGCACGTCTACGGGGTTCATTGAAAGAGT
TCAAACGAATGAGTGTATGGGAGCGTGTGCCGTTTATGCAGATAAGCGTA
AAGAATTGCCATGAAGTCTGTGTGGTTCAGTTGACGATTTGTTAAAGAGC
CTAAAATTGTATCCATCTGGACAAATAAAGCATGTAAATACTTAAGAGAC
ACGCAGAAAAGGATCGGGAACCGAAGCGGTAAATTTGTACAAGAGCGTGT
ATTATTACTATGTAGTAGGTAAGCGTGAAGAATTGCGATGAAGTCTGTGT
GGTCCAGTTGACGATTTGTTAAAGAGCCGTAAGTTGTATTCATCCGGAGA
AATAAGAAATAAAGTGTGTAAATACTTTAATAAGGACACGCAGAAAAGGG
TGGGGAACCGAGGTGGTGAATGTGTACAAGAGTGCGTATCGTGACTACGT
AGTATGTATGTAGGTGAGCGTAAGAATTGCAATGGAGTCTGTGTGGTCCA
GTTGACTATTTGTTTATAAAGAGCCTCGAGTTGTACCCATCTACATGGAG
AAATAAAACCAATAGAATATGTAAAAGTATGTACGTAGAGACACGCAGAT
TCAGGACGGGGAACCGAGGTCTTCGATGTGTACAAGAGCGTGCATCGTTT
TTATGTAGTAGATAAACGTAAGAATTGCGATGAGGTCCTTGTGGTCCAGT
TGACTGTTACAGAGCCTCAAATTGTATATATCTAGAGAAATAAAATATGT
ACATACTGAGAGGCACGCAGAAGAAGGACGGGGGACCGAGGTGGTGGATG
TGTAGATGCAAGAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1179:7823..13837+

>mRNA_L-elsbetiae_contig1179.1542.1 ID=mRNA_L-elsbetiae_contig1179.1542.1|Name=mRNA_L-elsbetiae_contig1179.1542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig1179:7823..13837+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCCCGAGACAAGCCGTGGGAGCCGACAGCTGGTTCTGCTCATCAT
AATGTGTGTCGCGGCCCCGTTCTTGAATTGGGCCGGTTCGCTCGTGACCA
CGGAGAAGCCGAACTCTGAGGACCCCCGGTCGACGTACAGATGCTCCCCG
AGACAAGCCGTGGGAGCCGACAGCTGGTTCTGCTCATCATAATGTGTGTC
GCGGCCCCGTTCTTGAATTGGGCCGGTTCGCTCGTGACCACGGAGAAGCC
GAACTCTGAGGACCCCCGGTCGACGTACAGGAAGTCGCGCGCGAGCTTCT
TCCTGGGGGCCCCTGCGCTATTTTTTTGGGGTGTGGGCACAAGCGGCATC
GGAGGAGTGCTCAACTGGGACGAGTCTTTGTCCGCAGCTCTGCTGGCGGT
GGCTACGATCATCATCCCCGCGGTCGACGCTTTTTTAAACTCTCAGAGAA
GTCGCGCGCGAGCTTCTTCCTGGGGGCCCCTGCGCTATTTTTTTGGGGTG
TGGGCACAAGCGGCATCGGAGGAGTGCTCAACTGGGACGAGTCTTTGTCC
GCAGCTCTGCTGGCGGTGGCTACGATCATCATCCCCGCGGTCGACGCTTT
TTTAAACTCTCAGAGAATCGAGCTGTGGTACGAAAATGAATCGAGCTGTG
GTACGAAAATCTGTCGTGCCAGAAGCAGCGGTTCGTCTGCAAGCTGTCGT
GCCAGAAGCAGCGGTTCGTCTGCAAGGCGAGACGCCAATGGCGTCGGAAG
GAGAAGCGCCCGTCCCCTCTCGATAGGAAGGGGGGCGTGCCGCCCGTGCG
CCACGAAATGGCTCACATACTACGCCACAGCGATGTTGAAGCTCCAAAAT
GGGCGAGACGCCAATGGCGTCGGAAGGAGAAGCGCCCGTCCCCTCTCGAT
AGGAAGGGGGGCGTGCCGCCCGTGCGCCACGAAATGGCTCACATACTACG
CCACAGCGATGTTGAAGCTCCAAAATGGGATGCGCTGGAAGAATCAACGT
CTCATGGAAATCTAGATAAGCCACATCCGTTGAGCCCACACCCCGAGACG
AAGGAAGACGAAGAAGGTTAAGATGCGCTGGAAGAATCAACGTCTCATGG
AAATCTAGATAAGCCACATCCGTTGAGCCCACACCCCGAGACGAAGGAAG
ACGAAGAAGGTTAA
back to top