mRNA_L-elsbetiae_contig1179.1541.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1179.1541.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 125 bits (315), Expect = 1.990e-28 Identity = 118/419 (28.16%), Postives = 175/419 (41.77%), Query Frame = 1 Query: 1 SHRLLNAIEAGSIAQVRLELEAERETLGAVLTAPSLVEEHGFRTPLMAAVMRGDLPIFTALLRRFERHFSKNAHKKCWQVLGGEACPQEGRDREVRTQLEIQDAEGRNLAMLAAQSGNVAILKAVMAEIRHTRATHVLGESDFQGHTVLMHAASAGSVPVFRVVHQSVASTLDKDDREGMSRHLTQRSGDGXXXXXXXXXXXNAMALSEVAEACRWACDPHTIRHMLYQTDAEGMNFLMHSVAALEGEPGAAPSAAESHLELRTPAYLTGSTES-------------LSSSTCDAVQSMGASGPGLDDAEPQLPDPAVPLFNVAIVLATECLWKGQRRQQMTATDLSGRTVLTHAIRPGHGQLFDAVLRAVRLDVLDLEVQEMMDTSGERLHNIPLRSALDNGGKDLQNLIRKRNRQLK 1218 S+ +L A+E+G A++R L + + APS+ EH RTPLMAA G L +FT +L R GE + R R QLE D G L MLAA+SG+V IL+AV+ +R A L + D TVLMHAA A VF V+ L + ++ + L S D + M V+ AC+ P +R ++ Q D EG+ FLMH+++A GA + +G G E L DP + + A L E R+Q+ ATD GRT+ HA+ ++FDAV A R +LD E+ +M + E + + +AL + + + +R+++LK Sbjct: 26 SNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAI-------------GEQRMETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHAAGARRSAVFTVI----LDELQRCYKDNVEEQLLASSADDRTILMHAARCGDQMGALSVSHACQRFIMPSRLRKLIKQVDGEGVTFLMHAISATADHTGAPTTXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXAGEGAPRNEWVL-DPGMAVLKSAWALVKEV------REQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALMGINKEDKSDTIMETALQTVPRAMAARVARRDQELK 420
BLAST of mRNA_L-elsbetiae_contig1179.1541.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 102 bits (255), Expect = 6.260e-20 Identity = 107/423 (25.30%), Postives = 168/423 (39.72%), Query Frame = 1 Query: 1 SHRLLNAIEAGSIAQVRLELEAERETLGAVLTAPSLVEEHGFRTPLMAAVMRGDLPIFTALLRRFERHFSKNAHKKCWQVLGGEACPQEGRDREVRTQLEIQDAEGRNLAMLAAQSGNVAILKAVMAEIRHTRATHVLGESDFQGHTVLMHAASAGSVPVFRVVHQSVASTLDKDDREGMSRHLTQRSGDGXXXXXXXXXXXNAMALSEVAEACRWACDPHTIRHMLYQTDAEGMNFLMHSVAALEGEPGAAPSAAESHLELRTPAYLTGSTESLSSS-----------------TCDAVQSMGASGPGLDDAEPQLPDPAVPLFNVAIVLATECLWKGQRRQQMTATDLSGRTVLTHAIRPGHGQLFDAVLRAVRLDVLDLEVQEMMDTSGERLHNIPLRSALDNGGKDLQNLIRKRNRQLK 1218 S+R+L A+E+ A++R L + + APS+ EH RTPLMAA G L +F +L R GE + R + QLE D G L MLAA+SGNV IL+AV+ +R + E V + + L + ++ + L S D + M + V+ AC+ P +R ++ Q D+EG+ FLMH+++A GA P+A + G G E L DP + + A+ L E R+Q+ ATD GRT+ HA+ ++FDAV A R +LD E+ +M + E + + +AL + + + +R+++LK Sbjct: 69 SNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAI-------------GEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVERVR------IAPEXXXXXXXXXXXXXXXXXXXXXSAVFTVILNELQRCYKDNVEEQLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTFLMHAISATSFHTGA-PTATXXXXXXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAPRDEWVL-DPGMAVLKSALALVEEV------REQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDTVMETALQTVPRAMAARVARRDQELK 464
BLAST of mRNA_L-elsbetiae_contig1179.1541.1 vs. uniprot
Match: D7FST0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST0_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 4.140e-13 Identity = 49/121 (40.50%), Postives = 60/121 (49.59%), Query Frame = 1 Query: 613 MALSEVAEACRWACDPHTIRHMLYQTDAEGMNFLMHSVAALEGEPGAAPSAAESHLELRTPAYLTGSTESLSSSTCDAVQSMGASGPGLDDAEPQLPDPAVPLFNVAIVLATECLWKGQRR 975 M L VA R CDP T+RH+LY+TDAEG+NFLMHSVA +P + A S +++ ++ G G D P PDPAVPLFNVA LWK Q R Sbjct: 1 MTLRTVANTVRRGCDPQTVRHLLYETDAEGLNFLMHSVAYRACQPAPVRGGENLGVSSSGSALPGASEDNVHLKRSSSIGESSVLGLGNDVVLP--PDPAVPLFNVAFEFVQCSLWKAQVR 119
BLAST of mRNA_L-elsbetiae_contig1179.1541.1 vs. uniprot
Match: A0A6H5JUR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR1_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 2.260e-12 Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1 Query: 1 SHRLLNAIEAGSIAQVRLELEAERETLGAVLTAPSLVEEHGFRTPLMAAVMRGDLPIFTALLRRFERHFSKN 216 SH L+ IE G++ VR L + ++LTAPSL EH RTPLMAAV RGDLPIFTALL F+R FS N Sbjct: 21 SHGLMQMIERGTVDDVRTILLKTQPPDRSILTAPSLEAEHFQRTPLMAAVERGDLPIFTALLHYFDRLFSAN 92 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1179.1541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1179.1541.1 >prot_L-elsbetiae_contig1179.1541.1 ID=prot_L-elsbetiae_contig1179.1541.1|Name=mRNA_L-elsbetiae_contig1179.1541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=406bp SHRLLNAIEAGSIAQVRLELEAERETLGAVLTAPSLVEEHGFRTPLMAAVback to top mRNA from alignment at L-elsbetiae_contig1179:3794..7897+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1179.1541.1 ID=mRNA_L-elsbetiae_contig1179.1541.1|Name=mRNA_L-elsbetiae_contig1179.1541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4104bp|location=Sequence derived from alignment at L-elsbetiae_contig1179:3794..7897+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1179:3794..7897+ >mRNA_L-elsbetiae_contig1179.1541.1 ID=mRNA_L-elsbetiae_contig1179.1541.1|Name=mRNA_L-elsbetiae_contig1179.1541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2436bp|location=Sequence derived from alignment at L-elsbetiae_contig1179:3794..7897+ (Laminarionema elsbetiae ELsaHSoW15)back to top |