mRNA_L-elsbetiae_contig1178.1535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1178.1535.1
Unique NamemRNA_L-elsbetiae_contig1178.1535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1178.1535.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 26/40 (65.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   16 QGSPEPVQLAPTECNNKRGVAFGFQDAGDIDTLKDGLSWW 135
            +GS EPV+L PT+C++KRGVAFGF+++GD+ TLK G+SWW
Sbjct:   85 EGSSEPVELVPTQCSSKRGVAFGFKESGDLYTLKTGISWW 124
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BLAST of mRNA_L-elsbetiae_contig1178.1535.1 vs. uniprot
Match: A0A6H5KQ88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ88_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.290e-11
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   16 QGSPEPVQLAPTECNNKRGVAFGFQDAGDIDTLKDGLSWW 135
            +G  EPV+L PT+C++KRGVAFGF+++ D+ TLK G+SWW
Sbjct:   48 EGHSEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWW 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1178.1535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG92_ECTSI1.010e-1265.00F5/8 type C domain protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5KQ88_9PHAE4.290e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1178contigL-elsbetiae_contig1178:28216..28353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue4.9e-08
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.5742686-CDS-L-elsbetiae_contig1178:28215..283531622815380.5742686-CDS-L-elsbetiae_contig1178:28215..28353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1178 28216..28353 +
1691682870.0349615-CDS-L-elsbetiae_contig1178:28215..283531691682870.0349615-CDS-L-elsbetiae_contig1178:28215..28353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1178 28216..28353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1178.1535.1prot_L-elsbetiae_contig1178.1535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1178 28216..28353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1178.1535.1

>prot_L-elsbetiae_contig1178.1535.1 ID=prot_L-elsbetiae_contig1178.1535.1|Name=mRNA_L-elsbetiae_contig1178.1535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
FSACEQGSPEPVQLAPTECNNKRGVAFGFQDAGDIDTLKDGLSWW*
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mRNA from alignment at L-elsbetiae_contig1178:28216..28353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1178.1535.1 ID=mRNA_L-elsbetiae_contig1178.1535.1|Name=mRNA_L-elsbetiae_contig1178.1535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=138bp|location=Sequence derived from alignment at L-elsbetiae_contig1178:28216..28353+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTCGGCGTGCGAACAAGGTTCACCCGAGCCCGTGCAACTGGCGCCGAC
GGAGTGCAACAACAAGCGAGGCGTTGCTTTCGGGTTCCAAGACGCGGGAG
ATATAGATACCCTAAAGGATGGCCTTTCCTGGTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1178:28216..28353+

>mRNA_L-elsbetiae_contig1178.1535.1 ID=mRNA_L-elsbetiae_contig1178.1535.1|Name=mRNA_L-elsbetiae_contig1178.1535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig1178:28216..28353+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTCGGCGTGCGAACAAGGTTCACCCGAGCCCGTGCAACTGGCGCCGAC
GGAGTGCAACAACAAGCGAGGCGTTGCTTTCGGGTTCCAAGACGCGGGAG
ATATAGATACCCTAAAGGATGGCCTTTCCTGGTGGTGATTTTCGGCGTGC
GAACAAGGTTCACCCGAGCCCGTGCAACTGGCGCCGACGGAGTGCAACAA
CAAGCGAGGCGTTGCTTTCGGGTTCCAAGACGCGGGAGATATAGATACCC
TAAAGGATGGCCTTTCCTGGTGGTGA
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