mRNA_L-elsbetiae_contig1174.1511.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1174.1511.1
Unique NamemRNA_L-elsbetiae_contig1174.1511.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1174.1511.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.990e-9
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = -2 
Query:  705 DGGMDIDKLVNDPAMESSMDSDAKEVVVLLRKLLALWPKK 824
            D G+DID LVNDP ME+SMD+DAKEVVVLLRKLL LWPKK
Sbjct:  724 DAGLDIDTLVNDPNMEASMDADAKEVVVLLRKLLDLWPKK 763
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1174.1511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWI4_9PHAE2.990e-982.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1174contigL-elsbetiae_contig1174:26553..27377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size825
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1174.1511.1prot_L-elsbetiae_contig1174.1511.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1174 26664..27119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.8544405-UTR-L-elsbetiae_contig1174:26552..266631622815376.8544405-UTR-L-elsbetiae_contig1174:26552..26663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1174 26553..26663 +
1691682868.2624035-UTR-L-elsbetiae_contig1174:26552..266631691682868.2624035-UTR-L-elsbetiae_contig1174:26552..26663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1174 26553..26663 +
1622815376.8787026-UTR-L-elsbetiae_contig1174:27119..273771622815376.8787026-UTR-L-elsbetiae_contig1174:27119..27377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1174 27120..27377 +
1691682868.2803257-UTR-L-elsbetiae_contig1174:27119..273771691682868.2803257-UTR-L-elsbetiae_contig1174:27119..27377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1174 27120..27377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.867909-CDS-L-elsbetiae_contig1174:26663..271191622815376.867909-CDS-L-elsbetiae_contig1174:26663..27119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1174 26664..27119 +
1691682868.2718532-CDS-L-elsbetiae_contig1174:26663..271191691682868.2718532-CDS-L-elsbetiae_contig1174:26663..27119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1174 26664..27119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1174.1511.1

>prot_L-elsbetiae_contig1174.1511.1 ID=prot_L-elsbetiae_contig1174.1511.1|Name=mRNA_L-elsbetiae_contig1174.1511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MPKAACSCARCGWCFRRLGFHLNSSETRIYTYEVRASVTKKGLSIKWREW
KDEGPSERNPRHALRKWSPSYVLCVDPETKANPSQQAKHQEASISANKVH
SLSLVQGAKLSCLCQGLTLVYISGTQGLGLHGEHADPSAPHGLRWTHRMQ
I*
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mRNA from alignment at L-elsbetiae_contig1174:26553..27377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1174.1511.1 ID=mRNA_L-elsbetiae_contig1174.1511.1|Name=mRNA_L-elsbetiae_contig1174.1511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=825bp|location=Sequence derived from alignment at L-elsbetiae_contig1174:26553..27377+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTGCATAGGCAGCGCGCATCAAACGGAAAACAAAGGGAAAAAAACAGG
CGGGGGAGGGCCCAAGGCTGCACCAGCCCAAAAAATAAAAACCGCCTTCA
AACCCAGCCCAATGCCAAAAGCTGCCTGTTCCTGCGCTCGATGTGGATGG
TGTTTCCGCCGGCTCGGTTTTCACCTCAATTCTTCCGAAACGAGAATATA
TACGTACGAGGTAAGAGCATCAGTTACAAAGAAGGGGCTTTCCATAAAAT
GGCGGGAGTGGAAAGACGAAGGACCTTCAGAACGGAACCCTCGACACGCC
CTCCGAAAATGGTCCCCAAGTTATGTGCTGTGTGTTGACCCGGAGACGAA
AGCCAATCCATCCCAGCAGGCAAAGCACCAAGAAGCCTCAATCTCTGCAA
ACAAGGTTCACTCACTCAGCCTAGTGCAAGGAGCGAAACTGAGCTGTTTG
TGTCAGGGCCTTACTCTCGTATACATCAGTGGAACACAGGGCTTGGGTTT
ACATGGCGAACACGCCGACCCTTCCGCACCGCATGGACTACGGTGGACTC
ACAGGATGCAAATATAACACACGAAAGTCCATGCTCTCGCCAGGTTGCCG
TCGGACGGTACTGGGGTAGGTTTCACCTCTGCATCGCAATGGACGCCCCC
CCTGCCCAACGCATGTTGGATTTTCTTCCAAAGGTGTATGATATTAACTT
TCTATTTCTTCGGCCACAGAGCGAGCAGCTTGCGCAGGAGCACCACCACC
TCCTTGGCGTCGCTATCCATGCTAGACTCCATCGCGGGGTCGTTGACTAG
CTTATCGATGTCCATGCCGCCGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1174:26553..27377+

>mRNA_L-elsbetiae_contig1174.1511.1 ID=mRNA_L-elsbetiae_contig1174.1511.1|Name=mRNA_L-elsbetiae_contig1174.1511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig1174:26553..27377+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAAAAGCTGCCTGTTCCTGCGCTCGATGTGGATGGTGTTTCCGCCG
GCTCGGTTTTCACCTCAATTCTTCCGAAACGAGAATATATACGTACGAGG
TAAGAGCATCAGTTACAAAGAAGGGGCTTTCCATAAAATGGCGGGAGTGG
AAAGACGAAGGACCTTCAGAACGGAACCCTCGACACGCCCTCCGAAAATG
GTCCCCAAGTTATGTGCTGTGTGTTGACCCGGAGACGAAAGCCAATCCAT
CCCAGCAGGCAAAGCACCAAGAAGCCTCAATCTCTGCAAACAAGGTTCAC
TCACTCAGCCTAGTGCAAGGAGCGAAACTGAGCTGTTTGTGTCAGGGCCT
TACTCTCGTATACATCAGTGGAACACAGGGCTTGGGTTTACATGGCGAAC
ACGCCGACCCTTCCGCACCGCATGGACTACGGTGGACTCACAGGATGCAA
ATATAAATGCCAAAAGCTGCCTGTTCCTGCGCTCGATGTGGATGGTGTTT
CCGCCGGCTCGGTTTTCACCTCAATTCTTCCGAAACGAGAATATATACGT
ACGAGGTAAGAGCATCAGTTACAAAGAAGGGGCTTTCCATAAAATGGCGG
GAGTGGAAAGACGAAGGACCTTCAGAACGGAACCCTCGACACGCCCTCCG
AAAATGGTCCCCAAGTTATGTGCTGTGTGTTGACCCGGAGACGAAAGCCA
ATCCATCCCAGCAGGCAAAGCACCAAGAAGCCTCAATCTCTGCAAACAAG
GTTCACTCACTCAGCCTAGTGCAAGGAGCGAAACTGAGCTGTTTGTGTCA
GGGCCTTACTCTCGTATACATCAGTGGAACACAGGGCTTGGGTTTACATG
GCGAACACGCCGACCCTTCCGCACCGCATGGACTACGGTGGACTCACAGG
ATGCAAATATAA
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