mRNA_L-elsbetiae_contig11722.1500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11722.1500.1
Unique NamemRNA_L-elsbetiae_contig11722.1500.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11722.1500.1 vs. uniprot
Match: D7FP02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP02_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 1.060e-154
Identity = 226/300 (75.33%), Postives = 263/300 (87.67%), Query Frame = 1 
Query:    1 LLVDASLKDEVFTNAIAKNGSFPVRASERSAYVIDGLDAGEAYDVFFVIEGLKGMRSPLPVNDGLESDTWYQVSAVSERAQGVFSEPVYAVTKTHRDPARVVETTVSPVPGSTDSLVVMMRLDCSSAPTNEACGIMSYKVAETPPSGSPENAKPRQVAQGTAVVADGRPTPHVVAGLAPGKAHSVSMAIETPGSNGALGPTLEAAATTFPHAPRLITVEAARADAEPSTVIIRYKLSEPGVIHVSLVEKVGHPQALIGTMIGNQHGVSFSREVGLSAGIEDDEE-NEPALEGSQVRRNTI 897
            +LV  SL D VF + +AK+GSFPVRASERSAYVIDGL AG+AYDVFFVIEGLKG+RSPLP+ND LESDTWYQVSAVSERA+GV+S+P YAV KTHR+PARV++   +PV GSTDSL +++RLDCSSAPT+EACG + Y+V E PP GSP NAKPRQVAQGTAVVADGR TPHVV+GL+PGKAHS+SMAIETPGSNGA GPT+E AATTFP APRL+T++AAR+D E STVI+RYKLSEPGV+HVSLVE+VGHP ALIGTMIGNQHGV FS EVG+SAG E++E+ ++ ALEGSQV   T 
Sbjct:    1 MLVAPSLNDAVFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVIEGLKGVRSPLPINDDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKATPVHGSTDSLSLLIRLDCSSAPTHEACGTLRYEVTEKPPKGSPANAKPRQVAQGTAVVADGRLTPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEVAATTFPRAPRLVTLDAARSDTEASTVIVRYKLSEPGVVHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSAGDEEEEDGSDSALEGSQVSSRTF 300
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11722.1500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP02_ECTSI1.060e-15475.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11722contigL-elsbetiae_contig11722:431..3287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_005000.1
Exons5
Model size897
Cds size897
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11722.1500.1prot_L-elsbetiae_contig11722.1500.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11722 431..3287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.1814823-CDS-L-elsbetiae_contig11722:430..6131622815376.1814823-CDS-L-elsbetiae_contig11722:430..613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 431..613 -
1691682867.8566704-CDS-L-elsbetiae_contig11722:430..6131691682867.8566704-CDS-L-elsbetiae_contig11722:430..613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 431..613 -
1622815376.1918607-CDS-L-elsbetiae_contig11722:989..11601622815376.1918607-CDS-L-elsbetiae_contig11722:989..1160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 990..1160 -
1691682867.8705707-CDS-L-elsbetiae_contig11722:989..11601691682867.8705707-CDS-L-elsbetiae_contig11722:989..1160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 990..1160 -
1622815376.2010586-CDS-L-elsbetiae_contig11722:1394..15271622815376.2010586-CDS-L-elsbetiae_contig11722:1394..1527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 1395..1527 -
1691682867.879939-CDS-L-elsbetiae_contig11722:1394..15271691682867.879939-CDS-L-elsbetiae_contig11722:1394..1527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 1395..1527 -
1622815376.2132418-CDS-L-elsbetiae_contig11722:1832..20921622815376.2132418-CDS-L-elsbetiae_contig11722:1832..2092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 1833..2092 -
1691682867.8979461-CDS-L-elsbetiae_contig11722:1832..20921691682867.8979461-CDS-L-elsbetiae_contig11722:1832..2092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 1833..2092 -
1622815376.2220259-CDS-L-elsbetiae_contig11722:3137..32871622815376.2220259-CDS-L-elsbetiae_contig11722:3137..3287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 3138..3287 -
1691682867.9130378-CDS-L-elsbetiae_contig11722:3137..32871691682867.9130378-CDS-L-elsbetiae_contig11722:3137..3287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11722 3138..3287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11722.1500.1

>prot_L-elsbetiae_contig11722.1500.1 ID=prot_L-elsbetiae_contig11722.1500.1|Name=mRNA_L-elsbetiae_contig11722.1500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
LLVDASLKDEVFTNAIAKNGSFPVRASERSAYVIDGLDAGEAYDVFFVIE
GLKGMRSPLPVNDGLESDTWYQVSAVSERAQGVFSEPVYAVTKTHRDPAR
VVETTVSPVPGSTDSLVVMMRLDCSSAPTNEACGIMSYKVAETPPSGSPE
NAKPRQVAQGTAVVADGRPTPHVVAGLAPGKAHSVSMAIETPGSNGALGP
TLEAAATTFPHAPRLITVEAARADAEPSTVIIRYKLSEPGVIHVSLVEKV
GHPQALIGTMIGNQHGVSFSREVGLSAGIEDDEENEPALEGSQVRRNTI
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mRNA from alignment at L-elsbetiae_contig11722:431..3287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11722.1500.1 ID=mRNA_L-elsbetiae_contig11722.1500.1|Name=mRNA_L-elsbetiae_contig11722.1500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2857bp|location=Sequence derived from alignment at L-elsbetiae_contig11722:431..3287- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCGTCGACGCATCGCTAAAGGACGAAGTCTTCACAAACGCCATAGC
GAAGAACGGTTCATTTCCCGTTCGGGCCAGCGAACGAAGCGCGTACGTTA
TCGATGGCTTGGATGCCGGAGAAGCCTACGACGTGTTTTTCGTCATCGAG
GTGGGCGTCGTTAGATATATCCACCACAAAAGGGTACATGTCTACATGTA
GGGTCCGCATCGCAGCAGAAGGGCCAAATGACATCTCATGCTAAACACGA
CAGCAACCTACTTGAACATGAGTTCTTGTAGGACCACCAGACCACGGGTC
CTGTGCACGCGAGACAGGGCCTCTCTTGTCAGCTCTTCTAGATGGGGGGG
AAGAGGGGGACGAGCTTGCTAGATGTAAAAAAGCTCTAGTCTACATCGGA
TGTCGTCGGACTCTGTTTTGCCTCGGTGCCGAAAGTCAAAGCAATGGTTC
GTCAGAACAGCAGCCTACTCTGAAGTATTTGCTTGAACAGACGATCGCCG
GCGTTCCTCGACTCATCAAACCCCGCTCTTGCTCCAAATCTCACATGTTG
ATCGTACATCAGGCAGAAAACAGCAATGGTCTCTTCGGCCCTGTCGGTCG
GGTTCTCGGGGTTTCAACCAACTCGCTTGCGCCAGCCATCTTATCTCTCA
CTGCGGCTCCGGTAGATACCCGGACGAACGCCACGCAGCTGTCGCTTTCC
ATGGACGCTCCCGGCGTGCCTTGTCGTGTATGGTACACGGTTCTGCCTTT
GCGAGATACAGTGCTTCTCGCGGTTGAAGAATTTTCTGCCGAGGAGATAA
AACAGACAGCGCCTCCAAGCAACGTTGTTGACCTTCCAAAGGTGAGTGTG
CGCTCTTTGTGTGGCCGACGTCCATAGAGTGAGAACAAACGACTGCTTAT
GCCTCTGTGTTTGTAACGTGGGTGGTTGCACAAGGGCGCCTCCCCAGGAG
GGCAGCACTACATGGCTGACGACTGGTACTCGGCGCGCAACAATTAAGGT
CTCAACGGCGCGCCCGTTGTGATCGCCTACGTGAAGCCTTGCGTTCGGAA
CTTGCGAGTTGCACCGGTGGGTATCGTGGTACTCTCCCAAGCTTTAAATG
TCGGGTCCCTCTTGATGAATTGCGAGTCTTCTTCTCCCTATTTCACGTTG
TCAACAGACAGCCCTTTGTCTTCTGCCCGGCATCAACAAAACCAGGGCCT
GAAAGGCATGCGCTCTCCCCTCCCCGTCAACGACGGCCTCGAGAGCGACA
CATGGTATCAGGTGTCCGCCGTTTCTGAACGCGCGCAGGGCGTTTTTAGC
GAGCCGGTCTACGCCGTAACAAAGACTCACAGAGATCCCGCAAGGGTAGT
GGAGACAACAGTATCGCCTGTTCCAGGCTCTACCGATTCGCTCGTGGTGA
TGATGAGGCTCGACTGTTCTTCAGCTCCCACTAACGAAGCGTGTGGAATC
ATGAGGTACACACGATATCTAGAGGTGCTGCGTGTGCAATGGAGCGAGAA
ATAAATGTTTCCAGAAATGAAATATCTTGTGGTTGGTCGTGATTTGTCCG
ATTCAATGCTCAGCAAACACCCTCGGAGCAATCAATTGGTAGCTTTGCAG
ACGCTAGAGATTGTTTTCTCGACTCCAGGAAATGACGGAACACTCGGCTT
CGTCACTCTGTACCACCGTTGGCAATCTATCGCACATCAAAATATTTCCC
CTGCAATACCGGGAGCATTCGTTATGCATCTGGTCCGAATGTGTTCTGAT
CGTTTGTCAGTTATAAAGTTGCCGAGACGCCGCCCAGCGGGTCCCCAGAA
AACGCCAAGCCTCGACAAGTAGCGCAAGGCACAGCGGTGGTTGCTGATGG
GCGGCCGACGCCCCACGTGGTGGCCGGTTTGGCACCTGGAAAGGTGCGTG
CGGCGTTTTTTGGTGGATATATATACAGCTGTATTGCCGCCTCTTTTCCC
CCTCCTGTTTTAGCCTAGCCAGCGGGGTGCTTTAGAATTGTACGCATCCT
GCTGCTTTATCCCGAATTTTGACCAGATGTCTGTAAATGGTTCACACCTG
AAACGCTGCCTTATTTGCAAGGTCCCGGCCATCATGACAAACCATTAACC
TTCGCTTGCCCAACTCAAACACGCCAGGCCCATTCTGTTTCCATGGCAAT
CGAGACTCCCGGCTCCAACGGGGCTCTCGGACCAACTTTGGAGGCAGCCG
CGACGACCTTCCCTCACGCGCCAAGGCTAATTACGGTGGAAGCAGCACGG
GCTGATGCCGAGCCATCTACGGTAATCATCCGTTACAAACTCTCCGAGGT
GCGTGAACTTTTTTCGGTGTCAAATTGTTTCCAATTGGGACAGTTTCAAG
AAGCAACGCCGCTTCAAGTTTCTACACAACCTCGTCCGTCAGCGCTCCCG
TATATACCTCGACGAAATGAGAAGGAGAACAGGAAAGGTGATTGGACCGG
CCGGACAAGAAACTAGTATCTAACAAGCAAAACCTCCATCTATCGTCACT
TGATGGTTCACTAACTGGCTTGTGCTGTCTTAATCGACTCTTTGTAAGAA
AGTGCAGGCGTGTGTGTGTGTCTAAGAGACAGGAAGGGTATAAGAGAGGA
GGAGGCGGCAGCGATAAGCCCGCTCTTCACTTCTACATCCCTCCCCTCCG
TTTCTCCCCTTCTCATGATGCCAGCCTGGTGTGATACACGTCAGCCTCGT
TGAAAAAGTAGGCCATCCCCAAGCTTTGATCGGAACTATGATCGGAAACC
AGCACGGGGTCAGCTTTTCTCGCGAGGTGGGCCTATCGGCAGGCATTGAG
GACGACGAGGAGAACGAACCGGCTTTAGAAGGATCACAGGTAAGGAGAAA
TACCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11722:431..3287-

>mRNA_L-elsbetiae_contig11722.1500.1 ID=mRNA_L-elsbetiae_contig11722.1500.1|Name=mRNA_L-elsbetiae_contig11722.1500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig11722:431..3287- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCGTCGACGCATCGCTAAAGGACGAAGTCTTCACAAACGCCATAGC
GAAGAACGGTTCATTTCCCGTTCGGGCCAGCGAACGAAGCGCGTACGTTA
TCGATGGCTTGGATGCCGGAGAAGCCTACGACGTGTTTTTCGTCATCGAG
CTTCTCGTCGACGCATCGCTAAAGGACGAAGTCTTCACAAACGCCATAGC
GAAGAACGGTTCATTTCCCGTTCGGGCCAGCGAACGAAGCGCGTACGTTA
TCGATGGCTTGGATGCCGGAGAAGCCTACGACGTGTTTTTCGTCATCGAG
GGCCTGAAAGGCATGCGCTCTCCCCTCCCCGTCAACGACGGCCTCGAGAG
CGACACATGGTATCAGGTGTCCGCCGTTTCTGAACGCGCGCAGGGCGTTT
TTAGCGAGCCGGTCTACGCCGTAACAAAGACTCACAGAGATCCCGCAAGG
GTAGTGGAGACAACAGTATCGCCTGTTCCAGGCTCTACCGATTCGCTCGT
GGTGATGATGAGGCTCGACTGTTCTTCAGCTCCCACTAACGAAGCGTGTG
GAATCATGAGGGCCTGAAAGGCATGCGCTCTCCCCTCCCCGTCAACGACG
GCCTCGAGAGCGACACATGGTATCAGGTGTCCGCCGTTTCTGAACGCGCG
CAGGGCGTTTTTAGCGAGCCGGTCTACGCCGTAACAAAGACTCACAGAGA
TCCCGCAAGGGTAGTGGAGACAACAGTATCGCCTGTTCCAGGCTCTACCG
ATTCGCTCGTGGTGATGATGAGGCTCGACTGTTCTTCAGCTCCCACTAAC
GAAGCGTGTGGAATCATGAGTTATAAAGTTGCCGAGACGCCGCCCAGCGG
GTCCCCAGAAAACGCCAAGCCTCGACAAGTAGCGCAAGGCACAGCGGTGG
TTGCTGATGGGCGGCCGACGCCCCACGTGGTGGCCGGTTTGGCACCTGGA
AAGTTATAAAGTTGCCGAGACGCCGCCCAGCGGGTCCCCAGAAAACGCCA
AGCCTCGACAAGTAGCGCAAGGCACAGCGGTGGTTGCTGATGGGCGGCCG
ACGCCCCACGTGGTGGCCGGTTTGGCACCTGGAAAGGCCCATTCTGTTTC
CATGGCAATCGAGACTCCCGGCTCCAACGGGGCTCTCGGACCAACTTTGG
AGGCAGCCGCGACGACCTTCCCTCACGCGCCAAGGCTAATTACGGTGGAA
GCAGCACGGGCTGATGCCGAGCCATCTACGGTAATCATCCGTTACAAACT
CTCCGAGGCCCATTCTGTTTCCATGGCAATCGAGACTCCCGGCTCCAACG
GGGCTCTCGGACCAACTTTGGAGGCAGCCGCGACGACCTTCCCTCACGCG
CCAAGGCTAATTACGGTGGAAGCAGCACGGGCTGATGCCGAGCCATCTAC
GGTAATCATCCGTTACAAACTCTCCGAGCCTGGTGTGATACACGTCAGCC
TCGTTGAAAAAGTAGGCCATCCCCAAGCTTTGATCGGAACTATGATCGGA
AACCAGCACGGGGTCAGCTTTTCTCGCGAGGTGGGCCTATCGGCAGGCAT
TGAGGACGACGAGGAGAACGAACCGGCTTTAGAAGGATCACAGGTAAGGA
GAAATACCATCCCTGGTGTGATACACGTCAGCCTCGTTGAAAAAGTAGGC
CATCCCCAAGCTTTGATCGGAACTATGATCGGAAACCAGCACGGGGTCAG
CTTTTCTCGCGAGGTGGGCCTATCGGCAGGCATTGAGGACGACGAGGAGA
ACGAACCGGCTTTAGAAGGATCACAGGTAAGGAGAAATACCATC
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