mRNA_L-elsbetiae_contig11721.1499.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11721.1499.1
Unique NamemRNA_L-elsbetiae_contig11721.1499.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11721.1499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11721contigL-elsbetiae_contig11721:448..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size683
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.1349099-CDS-L-elsbetiae_contig11721:447..11281622815376.1349099-CDS-L-elsbetiae_contig11721:447..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11721 448..1128 +
1691682867.8439238-CDS-L-elsbetiae_contig11721:447..11281691682867.8439238-CDS-L-elsbetiae_contig11721:447..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11721 448..1128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11721.1499.1prot_L-elsbetiae_contig11721.1499.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11721 448..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11721.1499.1

>prot_L-elsbetiae_contig11721.1499.1 ID=prot_L-elsbetiae_contig11721.1499.1|Name=mRNA_L-elsbetiae_contig11721.1499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
PVCLFVEPWRLWARAWMRRRFSRLCKSVWGGGRGDVQRPVRVWFAALLLC
GIDPVCFMRRNPRCRRLYVVVCVLGVLVCHRERDKRVGVVGRFCCVFARS
AAGRRVGERGWVICSVFFRRFFVVPFVETSRSGFIALGFSIRWREEGGEG
GGICTRCATVLLWFGGFWMGRAADSPPPPTLRCLEEHRRVRWVDGWMGVV
VDGVAVVGLPVKAQGAACLYPPCPPHI
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mRNA from alignment at L-elsbetiae_contig11721:448..1130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11721.1499.1 ID=mRNA_L-elsbetiae_contig11721.1499.1|Name=mRNA_L-elsbetiae_contig11721.1499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=683bp|location=Sequence derived from alignment at L-elsbetiae_contig11721:448..1130+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGTTTGTTTGTTTGTTGAACCCTGGCGACTTTGGGCAAGGGCGTGGAT
GCGGAGGAGGTTCAGCAGGTTGTGCAAGTCGGTGTGGGGGGGAGGCAGGG
GTGACGTGCAACGGCCAGTTCGTGTTTGGTTTGCTGCTTTGCTTCTGTGC
GGGATAGACCCGGTCTGTTTCATGCGACGGAACCCCCGGTGTCGACGGTT
GTATGTTGTTGTATGTGTGTTGGGTGTGTTGGTGTGTCATCGGGAAAGAG
ATAAGCGCGTCGGGGTTGTTGGTAGGTTTTGTTGTGTGTTTGCCAGATCA
GCGGCCGGCCGGAGGGTCGGGGAGAGAGGGTGGGTTATTTGTTCGGTCTT
TTTTCGTCGTTTTTTTGTGGTTCCGTTTGTGGAAACCTCCCGCTCCGGCT
TTATTGCTCTGGGATTTTCGATACGGTGGAGGGAAGAAGGGGGAGAGGGG
GGGGGGATTTGCACGCGGTGCGCAACGGTTCTCCTTTGGTTCGGTGGTTT
CTGGATGGGTAGGGCGGCGGATTCGCCCCCCCCCCCCACCTTGAGGTGCT
TGGAGGAACACCGGCGAGTCCGGTGGGTGGATGGGTGGATGGGTGTCGTC
GTGGATGGTGTCGCCGTCGTGGGTCTGCCTGTGAAAGCGCAAGGTGCCGC
CTGCTTGTATCCTCCATGCCCACCACACATACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11721:448..1130+

>mRNA_L-elsbetiae_contig11721.1499.1 ID=mRNA_L-elsbetiae_contig11721.1499.1|Name=mRNA_L-elsbetiae_contig11721.1499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig11721:448..1130+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGTTTGTTTGTTTGTTGAACCCTGGCGACTTTGGGCAAGGGCGTGGAT
GCGGAGGAGGTTCAGCAGGTTGTGCAAGTCGGTGTGGGGGGGAGGCAGGG
GTGACGTGCAACGGCCAGTTCGTGTTTGGTTTGCTGCTTTGCTTCTGTGC
GGGATAGACCCGGTCTGTTTCATGCGACGGAACCCCCGGTGTCGACGGTT
GTATGTTGTTGTATGTGTGTTGGGTGTGTTGGTGTGTCATCGGGAAAGAG
ATAAGCGCGTCGGGGTTGTTGGTAGGTTTTGTTGTGTGTTTGCCAGATCA
GCGGCCGGCCGGAGGGTCGGGGAGAGAGGGTGGGTTATTTGTTCGGTCTT
TTTTCGTCGTTTTTTTGTGGTTCCGTTTGTGGAAACCTCCCGCTCCGGCT
TTATTGCTCTGGGATTTTCGATACGGTGGAGGGAAGAAGGGGGAGAGGGG
GGGGGGATTTGCACGCGGTGCGCAACGGTTCTCCTTTGGTTCGGTGGTTT
CTGGATGGGTAGGGCGGCGGATTCGCCCCCCCCCCCCACCTTGAGGTGCT
TGGAGGAACACCGGCGAGTCCGGTGGGTGGATGGGTGGATGGGTGTCGTC
GTGGATGGTGTCGCCGTCGTGGGTCTGCCTGTGAAAGCGCAAGGTGCCGC
CTGCTTGTATCCTCCATGCCCACCACACATACCTGTTTGTTTGTTTGTTG
AACCCTGGCGACTTTGGGCAAGGGCGTGGATGCGGAGGAGGTTCAGCAGG
TTGTGCAAGTCGGTGTGGGGGGGAGGCAGGGGTGACGTGCAACGGCCAGT
TCGTGTTTGGTTTGCTGCTTTGCTTCTGTGCGGGATAGACCCGGTCTGTT
TCATGCGACGGAACCCCCGGTGTCGACGGTTGTATGTTGTTGTATGTGTG
TTGGGTGTGTTGGTGTGTCATCGGGAAAGAGATAAGCGCGTCGGGGTTGT
TGGTAGGTTTTGTTGTGTGTTTGCCAGATCAGCGGCCGGCCGGAGGGTCG
GGGAGAGAGGGTGGGTTATTTGTTCGGTCTTTTTTCGTCGTTTTTTTGTG
GTTCCGTTTGTGGAAACCTCCCGCTCCGGCTTTATTGCTCTGGGATTTTC
GATACGGTGGAGGGAAGAAGGGGGAGAGGGGGGGGGGATTTGCACGCGGT
GCGCAACGGTTCTCCTTTGGTTCGGTGGTTTCTGGATGGGTAGGGCGGCG
GATTCGCCCCCCCCCCCCACCTTGAGGTGCTTGGAGGAACACCGGCGAGT
CCGGTGGGTGGATGGGTGGATGGGTGTCGTCGTGGATGGTGTCGCCGTCG
TGGGTCTGCCTGTGAAAGCGCAAGGTGCCGCCTGCTTGTATCCTCCATGC
CCACCACACATA
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