mRNA_L-elsbetiae_contig1172.1497.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1172.1497.1
Unique NamemRNA_L-elsbetiae_contig1172.1497.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1172.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1172contigL-elsbetiae_contig1172:25877..26398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1172.1497.1prot_L-elsbetiae_contig1172.1497.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1172 25991..26335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.654653-UTR-L-elsbetiae_contig1172:25876..259901622815375.654653-UTR-L-elsbetiae_contig1172:25876..25990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 25877..25990 +
1691682867.5094893-UTR-L-elsbetiae_contig1172:25876..259901691682867.5094893-UTR-L-elsbetiae_contig1172:25876..25990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 25877..25990 +
1622815375.691152-UTR-L-elsbetiae_contig1172:26335..263981622815375.691152-UTR-L-elsbetiae_contig1172:26335..26398Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 26336..26398 +
1691682867.5264347-UTR-L-elsbetiae_contig1172:26335..263981691682867.5264347-UTR-L-elsbetiae_contig1172:26335..26398Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 26336..26398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.6733263-CDS-L-elsbetiae_contig1172:25990..263351622815375.6733263-CDS-L-elsbetiae_contig1172:25990..26335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1172 25991..26335 +
1691682867.5182984-CDS-L-elsbetiae_contig1172:25990..263351691682867.5182984-CDS-L-elsbetiae_contig1172:25990..26335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1172 25991..26335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1172.1497.1

>prot_L-elsbetiae_contig1172.1497.1 ID=prot_L-elsbetiae_contig1172.1497.1|Name=mRNA_L-elsbetiae_contig1172.1497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MAWWTPRSSEMRLSCVHQAAYLEWSKTAEFCAQNAKRMAWWTPPRTRVPH
HPYFQQSCQGDSTGRRSIAEGAHVRSRKTPDVIQPETAVAAATALDKALR
PQDTGHPKASRINI*
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mRNA from alignment at L-elsbetiae_contig1172:25877..26398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1172.1497.1 ID=mRNA_L-elsbetiae_contig1172.1497.1|Name=mRNA_L-elsbetiae_contig1172.1497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig1172:25877..26398+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGACATTTTTTTTTCTTCCTACGGATACCCTCACGTTCACGTTTTGT
GTTTTTTACGGCATGGAAGCTAGGCTGCAAGACGGCGGAGTTCTGCGCTC
AACACGCCAAAAGGATGGCATGGTGGACGCCCAGAAGCAGCGAGATGCGG
CTATCGTGTGTACACCAAGCGGCCTATTTGGAATGGAGCAAGACGGCGGA
GTTCTGCGCTCAAAACGCCAAAAGGATGGCATGGTGGACGCCACCGAGAA
CAAGAGTGCCCCACCACCCCTACTTCCAACAATCCTGCCAGGGAGATAGC
ACAGGGCGGCGAAGTATTGCGGAAGGCGCCCACGTTCGCTCGCGGAAAAC
ACCAGATGTAATACAGCCGGAGACGGCGGTGGCGGCGGCGACCGCACTGG
ACAAGGCACTCCGCCCTCAAGACACCGGCCATCCTAAAGCATCAAGGATA
AATATCTAGTTCATACGTCCCACTGGCTCTCGCTCGTATCCCGCTCGCGC
TCCGGCCCAGCAGACGGCCCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1172:25877..26398+

>mRNA_L-elsbetiae_contig1172.1497.1 ID=mRNA_L-elsbetiae_contig1172.1497.1|Name=mRNA_L-elsbetiae_contig1172.1497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1172:25877..26398+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATGGTGGACGCCCAGAAGCAGCGAGATGCGGCTATCGTGTGTACA
CCAAGCGGCCTATTTGGAATGGAGCAAGACGGCGGAGTTCTGCGCTCAAA
ACGCCAAAAGGATGGCATGGTGGACGCCACCGAGAACAAGAGTGCCCCAC
CACCCCTACTTCCAACAATCCTGCCAGGGAGATAGCACAGGGCGGCGAAG
TATTGCGGAAGGCGCCCACGTTCGCTCGCGGAAAACACCAGATGTAATAC
AGCCGGAGACGGCGGTGGCGGCGGCGACCGCACTGGACAAGGCACTCCGC
CCTCAAGACACCGGCCATCCTAAAGCATCAAGGATAAATATCTAGATGGC
ATGGTGGACGCCCAGAAGCAGCGAGATGCGGCTATCGTGTGTACACCAAG
CGGCCTATTTGGAATGGAGCAAGACGGCGGAGTTCTGCGCTCAAAACGCC
AAAAGGATGGCATGGTGGACGCCACCGAGAACAAGAGTGCCCCACCACCC
CTACTTCCAACAATCCTGCCAGGGAGATAGCACAGGGCGGCGAAGTATTG
CGGAAGGCGCCCACGTTCGCTCGCGGAAAACACCAGATGTAATACAGCCG
GAGACGGCGGTGGCGGCGGCGACCGCACTGGACAAGGCACTCCGCCCTCA
AGACACCGGCCATCCTAAAGCATCAAGGATAAATATCTAG
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