mRNA_L-elsbetiae_contig1172.1496.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1172.1496.1
Unique NamemRNA_L-elsbetiae_contig1172.1496.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1172.1496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1172contigL-elsbetiae_contig1172:23324..24010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1172.1496.1prot_L-elsbetiae_contig1172.1496.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1172 23362..23763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.6020014-UTR-L-elsbetiae_contig1172:23323..233611622815375.6020014-UTR-L-elsbetiae_contig1172:23323..23361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 23324..23361 +
1691682867.4793565-UTR-L-elsbetiae_contig1172:23323..233611691682867.4793565-UTR-L-elsbetiae_contig1172:23323..23361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 23324..23361 +
1622815375.6250262-UTR-L-elsbetiae_contig1172:23763..240101622815375.6250262-UTR-L-elsbetiae_contig1172:23763..24010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 23764..24010 +
1691682867.5013402-UTR-L-elsbetiae_contig1172:23763..240101691682867.5013402-UTR-L-elsbetiae_contig1172:23763..24010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1172 23764..24010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.6147945-CDS-L-elsbetiae_contig1172:23361..237631622815375.6147945-CDS-L-elsbetiae_contig1172:23361..23763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1172 23362..23763 +
1691682867.49111-CDS-L-elsbetiae_contig1172:23361..237631691682867.49111-CDS-L-elsbetiae_contig1172:23361..23763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1172 23362..23763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1172.1496.1

>prot_L-elsbetiae_contig1172.1496.1 ID=prot_L-elsbetiae_contig1172.1496.1|Name=mRNA_L-elsbetiae_contig1172.1496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MMERVVTGRDWSVLHALALLHVMMRLIDRSIDTLGSSCRGVLPRDVFVQS
KSTVGLADDEGDLTPSCVRGVVRVDLLRFDFVVPAREESCYVVCLLSGKV
SYPPSVPRRSGCNVRSLFVGATQAGGGPSPSPV*
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mRNA from alignment at L-elsbetiae_contig1172:23324..24010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1172.1496.1 ID=mRNA_L-elsbetiae_contig1172.1496.1|Name=mRNA_L-elsbetiae_contig1172.1496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=687bp|location=Sequence derived from alignment at L-elsbetiae_contig1172:23324..24010+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTAGAGGCTCCGGAGGAGGGGCTGCTGGAGACGCTTATGATGGAGAGG
GTGGTAACTGGGCGTGATTGGTCCGTTTTACACGCTTTGGCCCTGCTTCA
TGTCATGATGCGATTGATCGATCGATCGATCGATACGCTTGGATCGTCTT
GTCGTGGTGTTTTGCCTAGGGATGTGTTTGTACAGAGTAAATCGACAGTT
GGCCTCGCCGATGATGAAGGTGATTTAACACCATCCTGTGTGCGCGGCGT
CGTTCGTGTGGATCTCTTGAGATTTGATTTTGTTGTCCCGGCACGCGAGG
AGAGCTGTTATGTGGTTTGTCTTCTGTCTGGCAAAGTGTCATACCCTCCC
AGTGTGCCACGGCGGAGCGGCTGTAATGTGAGGAGCTTGTTTGTTGGTGC
TACACAGGCAGGAGGGGGGCCATCCCCTTCTCCTGTGTGACCCCGGTTGG
GTCGTCTAACTAGTCGTAGTGGAGGATGGGGCCAGTGGGGCAGACGACGA
ATAAGCCAATGATGGGAGGGAAAACACATAAATACACAATAGGCCCAGGT
ACTCTCGGTGGTGTCCTTGGGTCGGGATATTCGCTGCGCACTTCGTCCAT
CTGGGGGAGCTTGGCGGCCGGTTTATATTTTTGGTGTGTGCTTGGTCCGA
GCGAGTACTTGCTTTCCATCGGAGCAATCTCTCTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1172:23324..24010+

>mRNA_L-elsbetiae_contig1172.1496.1 ID=mRNA_L-elsbetiae_contig1172.1496.1|Name=mRNA_L-elsbetiae_contig1172.1496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig1172:23324..24010+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGAGAGGGTGGTAACTGGGCGTGATTGGTCCGTTTTACACGCTTT
GGCCCTGCTTCATGTCATGATGCGATTGATCGATCGATCGATCGATACGC
TTGGATCGTCTTGTCGTGGTGTTTTGCCTAGGGATGTGTTTGTACAGAGT
AAATCGACAGTTGGCCTCGCCGATGATGAAGGTGATTTAACACCATCCTG
TGTGCGCGGCGTCGTTCGTGTGGATCTCTTGAGATTTGATTTTGTTGTCC
CGGCACGCGAGGAGAGCTGTTATGTGGTTTGTCTTCTGTCTGGCAAAGTG
TCATACCCTCCCAGTGTGCCACGGCGGAGCGGCTGTAATGTGAGGAGCTT
GTTTGTTGGTGCTACACAGGCAGGAGGGGGGCCATCCCCTTCTCCTGTGT
GAATGATGGAGAGGGTGGTAACTGGGCGTGATTGGTCCGTTTTACACGCT
TTGGCCCTGCTTCATGTCATGATGCGATTGATCGATCGATCGATCGATAC
GCTTGGATCGTCTTGTCGTGGTGTTTTGCCTAGGGATGTGTTTGTACAGA
GTAAATCGACAGTTGGCCTCGCCGATGATGAAGGTGATTTAACACCATCC
TGTGTGCGCGGCGTCGTTCGTGTGGATCTCTTGAGATTTGATTTTGTTGT
CCCGGCACGCGAGGAGAGCTGTTATGTGGTTTGTCTTCTGTCTGGCAAAG
TGTCATACCCTCCCAGTGTGCCACGGCGGAGCGGCTGTAATGTGAGGAGC
TTGTTTGTTGGTGCTACACAGGCAGGAGGGGGGCCATCCCCTTCTCCTGT
GTGA
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