mRNA_L-elsbetiae_contig11716.1493.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11716.1493.1
Unique NamemRNA_L-elsbetiae_contig11716.1493.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A6H5KHT1_9PHAE (Squalene monooxygenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT1_9PHAE)

HSP 1 Score: 1027 bits (2656), Expect = 0.000e+0
Identity = 539/649 (83.05%), Postives = 569/649 (87.67%), Query Frame = 1
Query:    1 RLYVVNYAAVAVFAASMYRIMRLWDGPLNRMNFFPLAVPFIGVFASLTYLFGFFGISIIAGVMDPPFLSSPAPSPKHRSSFPPAAENQSRQFSPADGSPSSYSLNSPEVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGG--GKVEGQRE--VPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALLEGDSGEVVGVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRTMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTPDDPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPWEHERWEN 1935
            RLYVVNY AVAVFAASMYRI+RLWDG LNRM+FFPLAVPFIGVFAS+TYLFGFFGIS+I+GVMDPPF+SSPAPS K RS+ P  A    ++FSP +   S YSL++PEV+IVGAGTAGASAA T ARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSV+VDGYAIIR A +G      AA+       VMLYYPESDPE +SELFGKGVKPAAAA    A  GG  G+    RE  VPRGRSFHNCRFVQRLREAA AEPNVRVVE TVSALLEGD GEVVGVRYREA K   G G +EER T EVRAPLTVVADGIWSGLRKCANTNRPQK+STFVGVLV HAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMP AADGGL+AHLREKSAPQLPA FRPAFLEAVARGDVKSMPNR MPAS+VHR GALLLGDALNMRHPLTGGGMTVALKDVELLS LL+ V   DAAAVA+ AARFH GRRAHAATINILANALY VFSTP+ PASK TR++LQ ACFDYLSLGGCYSAGPVGLLSGLSPAPW L THFFMVAFHGCR HLLP+PTPGG LRVYRLLHVATKIIMPLLE+EGSTFLAWWP RKA+QLVLPWEHERWEN
Sbjct:  147 RLYVVNYVAVAVFAASMYRIVRLWDGSLNRMHFFPLAVPFIGVFASMTYLFGFFGISVISGVMDPPFVSSPAPSSKDRSAAP--AAGLPKRFSPTEEGSSDYSLDNPEVIIVGAGTAGASAAATFARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVVVDGYAIIRSAETG----GAAAEAEGRLDSVMLYYPESDPENRSELFGKGVKPAAAA---AAAKGGEAGRRPCSREGGVPRGRSFHNCRFVQRLREAAQAEPNVRVVEGTVSALLEGDGGEVVGVRYREAVK---GEGQEEERVTREVRAPLTVVADGIWSGLRKCANTNRPQKLSTFVGVLVKHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPSAADGGLSAHLREKSAPQLPAMFRPAFLEAVARGDVKSMPNRAMPASSVHRPGALLLGDALNMRHPLTGGGMTVALKDVELLSELLRGVPLRDAAAVASAAARFHAGRRAHAATINILANALYHVFSTPEGPASKGTRVDLQAACFDYLSLGGCYSAGPVGLLSGLSPAPWALTTHFFMVAFHGCREHLLPVPTPGGVLRVYRLLHVATKIIMPLLEQEGSTFLAWWPFRKAIQLVLPWEHERWEN 783          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: D7G804_ECTSI (Squalene monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G804_ECTSI)

HSP 1 Score: 1016 bits (2626), Expect = 0.000e+0
Identity = 527/629 (83.78%), Postives = 553/629 (87.92%), Query Frame = 1
Query:   49 MYRIMRLWDGPLNRMNFFPLAVPFIGVFASLTYLFGFFGISIIAGVMDPPFLSSPAPSPKHRSSFPPAAENQSRQFSPADGSPSSYSLNSPEVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALLEGDSGEVVGVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRTMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTPDDPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPWEHERWEN 1935
            MYRI+RLWDG LNRM+FFPLAVPFIGVFAS+TYLFGFFGISII+GVMDPPFLSSPAPSPK RS+ P  A   ++ FSP +  PS Y L+ PEV+IVGAGTAGASAA T ARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSV+VDGYAIIR A +G      AA        VMLYYPESDPE +SELFGKGVKPAAAA  +   AG      + EVPRGRSFHNCRFVQRLREAA AEPNVRVVE TVSALLEGD GEVVGVRYREAAK E     +EER T EVRAPLTVVADGIWSGLRKCANTNRPQK+STFVGVLV HAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMP AADGGL+AHLREKSAPQLPA FRPAFLEAVARGDVKSMPNR MPAS+VHR GALLLGDALNMRHPLTGGGMTVALKDVELLS LL+ V F DAAAVA+ AARFH GRRAHAATINILANALY VFSTP+DPASK TR++LQ ACFDYLSLGGCYSAGPVGLLSGLSP PWVL THFFMVAFHGCR HLLP+PTPGG LRVYRLLHVATKIIMPLLEEEGSTFLAWWP RKA+QLVLPWEHERWEN
Sbjct:    1 MYRIVRLWDGSLNRMHFFPLAVPFIGVFASMTYLFGFFGISIISGVMDPPFLSSPAPSPKDRSAAP--AAGPAKHFSPTEEGPSDYGLDKPEVIIVGAGTAGASAAATFARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVVVDGYAIIRSAEAG----GAAAAPGGRRDSVMLYYPESDPENRSELFGKGVKPAAAATAKGGEAGRRPCSREGEVPRGRSFHNCRFVQRLREAAQAEPNVRVVEGTVSALLEGDGGEVVGVRYREAAKGEGQE--EEERVTREVRAPLTVVADGIWSGLRKCANTNRPQKLSTFVGVLVKHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPSAADGGLSAHLREKSAPQLPAMFRPAFLEAVARGDVKSMPNRAMPASSVHRPGALLLGDALNMRHPLTGGGMTVALKDVELLSELLRGVPFRDAAAVASAAARFHAGRRAHAATINILANALYHVFSTPEDPASKGTRVDLQAACFDYLSLGGCYSAGPVGLLSGLSPVPWVLTTHFFMVAFHGCREHLLPVPTPGGVLRVYRLLHVATKIIMPLLEEEGSTFLAWWPFRKAIQLVLPWEHERWEN 621          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A836CDI9_9STRA (Squalene monooxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI9_9STRA)

HSP 1 Score: 637 bits (1643), Expect = 2.740e-216
Identity = 377/649 (58.09%), Postives = 443/649 (68.26%), Query Frame = 1
Query:   49 MYRIMRLWDGPLNRMNFFPLAVPFIGVFASLTYLFGFFGISIIAGVM------DPPFLSSPAPSPKHRSSFPPA----AENQSRQFSPADGSPSSYSLNSPEVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGV--KPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALLEGDSGEVVGVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARG-DVKSMPNRTMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTP----DDPASKDT--RINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLP--TPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPWEHERWE 1932
            MY  ++ W+G LNRMN F LA+P +GVFAS+TY FGFFGIS +  V+      +P  L S  P+    S+   A    A     + +PA  S + Y+L  PEVV++GAGTAGAS A+  A QGR+V L+E+    QDRIVGEL+QPGG+RALE LGL ACA E  DSV VDGY +I P        DGA          +L+YP+SDP+   + FG GV  + AAAAG      G G        PRGRSFHNC FV RLRE A AEPNVR+VE TV+ L+E + G VVGVRY+  +  E G G    R  HE+RAPLT+VADGIWSGLR CAN ++P  +S+FVGV+VTH   A+PVPH+HCGHVVLA PSPILIYQIS TETRVLVDVAG MP AA G L+A L E+ A  LP  FR A+LEAVA G  +KSMPNR + +S   + GA+L+GDALNMRHPLTGGGMTVALKDV LL+ LL      D AAVA  +A FH  RR HAATIN+LANALY VF+TP    DD    D   R +LQ ACFDYLSLGG Y+AGP+GLLSGL+P P VLA HFFMVA HGCR HLLPL    P  +  VYRLL VA  IIMPLLE E ST L+W PVRKAVQL+ PWEH RW+
Sbjct:    1 MYSFLKEWEGALNRMNVFKLALPGLGVFASMTYFFGFFGISFVNSVLGTDNQAEPCELDSDKPNNSSGSNVDEATAAVASGPYARSAPA--SSAKYTLEQPEVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAE--------AVLHYPDSDPDSLLQQFGAGVTLEQAAAAG------GAG-------APRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVE-EGGAVVGVRYKVRSGGEGG-GYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEHLRWD 623          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A4D9D9N2_9STRA (Squalene monooxygenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9N2_9STRA)

HSP 1 Score: 486 bits (1251), Expect = 8.690e-157
Identity = 304/596 (51.01%), Postives = 368/596 (61.74%), Query Frame = 1
Query:  325 VVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAA---AAGRETATAG--------GGKV-------------EGQREV---------------------------------PRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALL--EGDS--GEVVGVRYREAAKEEAGAGGQEERATHEVR---APLTVVADGIWSGLRKCAN-TNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRTMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQ-DVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTPDDPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPW 1914
            ++I+GAGTAGA+AAV LA +G KVLL ER MS QDRIVGELLQPGG+RALERLGLD CAKEG DSV VDGY +  P    +    G   Q      ++L YP  DP    ELFG  + P+    AA R T +          GGK+             EG +                                   P+GRSFHN RFVQRLR  ALAEPNV VV   VS LL  E DS    V+GV Y+            EE    EVR   APLT+VADG+WS LR   +   +P ++S+FVG++++H   A+P+PH HCGHVVLA PSP+L+YQISSTETRVLVD+ G MP A+ G LA +L     PQLP   +  F  AVARG+ KSMPNR+MPA+NV R G L++GDALNMRHPLTGGGMTVAL+DVE L  LL+      D AA+  +  RF   R+A AATIN+LANAL+ VFSTP   A   TR +L+ ACFDYLS+GG  + GP+ LLSGL+P P +LA HFF+VAFHG R +L P+P+ GG  R Y +L VA +IIMPLL  E ST LA WPVR  V L+ P+
Sbjct:   94 IIIIGAGTAGAAAAVGLAERGFKVLLFERDMSLQDRIVGELLQPGGVRALERLGLDECAKEGIDSVHVDGYVVFTPPQHKK--EGGEKVQS-----ILLKYPAYDPATLKELFGV-IDPSPSSPAADRPTLSLSPPRFSEKEGGKLVHGAGRAVTPPFPEGTKVTHAPNPPSSPSGHLSMPPSPSFPSAAHQGPTSLHPQGRSFHNGRFVQRLRARALAEPNVTVVNGIVSRLLYAEPDSPTSRVIGVEYKIGTGRRLRTADGEEVEEKEVRRAMAPLTLVADGLWSSLRTHVDKAAKPTQLSSFVGLILSHPPMASPLPHPHCGHVVLADPSPVLLYQISSTETRVLVDIFGRMPSASTGDLAHYLSTHIQPQLPPVLQAPFAAAVARGEFKSMPNRSMPAANVDRDGVLMVGDALNMRHPLTGGGMTVALRDVEALCYLLETSTDLGDPAAMRVLKGRFARERKAWAATINVLANALHAVFSTP---AGNPTRKDLRDACFDYLSVGGYCAGGPINLLSGLTPRPSILALHFFLVAFHGVRKYLWPVPSWGGLGRTYEMLQVACEIIMPLLSVEKSTVLAAWPVRALVGLIFPY 678          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A6G0XPP6_9STRA (Squalene monooxygenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPP6_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 3.600e-133
Identity = 248/535 (46.36%), Postives = 318/535 (59.44%), Query Frame = 1
Query:  322 EVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALLEGDSGEV---VGVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRTMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTPDDPAS-KDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPW 1914
            +V+IVGAGT G S A+ LA+QG+KV +VE+ M  QDR VGEL+QPGGL+AL +LGL  CA+  TD V+  GY +I                      +ML YP+  P+   E  G   +     G++                 GR FHN  FVQRLRE  + EPNV +VE TV+ LL  D  +     G++YR  A  E       E       APL +V+DG+WSGLR+  + + P+++S+FV VL+TH    A VP +  GHV+LA PSPIL+YQIS TETRVLVDV G +P ++ G L  HL    APQ+P   R AF+EAV  G VK+MPNR    +       ++LGD  NMRHPLTGGGMTVALKDV LLS LL+DV    +A +AAV   F   R  H++T+NILANALY VFS P D +     R+ L+ +C++YL +GG + AGP+GLL  L+P P +LA HFFMVA +     L P PTP   L  YR+ H A  IIMPLLE E  T LAW P+   V L+ P+
Sbjct:  131 DVIIVGAGTTGCSMAIALAKQGKKVFIVEKTMEYQDRFVGELMQPGGLQALRKLGLIECAETETD-VLTKGYTVILDEKDN----------------IMLPYPDRVPQNFWEFLGV-FRNDNGTGKQY----------------GRCFHNGGFVQRLRERLMKEPNVTIVEGTVTKLLMADDAKANVCTGIQYRRRAPTE-----DVEMPVESATAPLVIVSDGLWSGLRRDLSKDSPKQISSFVAVLMTHPKMEATVPCRQFGHVILAQPSPILMYQISPTETRVLVDVPGKVPSSSSGALTEHLISYVAPQIPKESRAAFIEAVKTGPVKTMPNREFMTTQPSIGRVIMLGDTFNMRHPLTGGGMTVALKDVVLLSELLRDVDVTKSADIAAVRRTFERERVHHSSTVNILANALYHVFSVPLDGSDVAAARVTLRESCYEYLKMGGMFMAGPLGLLCALTPKPMILALHFFMVAGYAASRCLRPFPTPARLLHCYRVFHQACIIIMPLLERENVTVLAWAPLCALVNLIFPY 626          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: W4HAJ6_9STRA (Squalene monooxygenase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAJ6_9STRA)

HSP 1 Score: 422 bits (1085), Expect = 7.780e-133
Identity = 253/543 (46.59%), Postives = 325/543 (59.85%), Query Frame = 1
Query:  316 SPEVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALL-----EGDSGEVVGVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRT-MPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTP----DDPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPW 1914
            S +V+IVGAGTAG S AV LA+QGRKVL++E+ +  QDR VGEL+QPGGL AL  L L  CA+  TD V   GY+I+ P +                  +ML YP+  P    E  G             A  G GK  G       R FHN  FVQRLR   LAEPNV VVE TVS LL     +  +    G+++R  A  +       E       APL + +DG+WSGLR+  +T+ P+++S+FV +L+TH A  A VP ++ GHV+LAHPSPIL+YQIS TETRVLVDV G +P +++G L  HL    APQ+P + R AF+ AV  G VKSMPNR  M     H    ++LGD  NMRHPLTGGGM+VALKDV LL+ LL++V       VAAV   F + R  H++T+NILANALY +FS P    DD      R  L+ +C++YL +GG + AGP+GLLS L+P P+VLATHFFMVA +     L P PTP      +++ H A  IIMPLLE E  T LAW P+R  + ++ P+
Sbjct:  126 SADVIIVGAGTAGCSMAVGLAKQGRKVLVIEKSLEYQDRFVGELMQPGGLEALRSLDLIECAETSTD-VKTLGYSILLPHSDH----------------IMLPYPDRAPHTFLEYMGLS----------RADNGTGKQHG-------RGFHNGAFVQRLRARMLAEPNVTVVEGTVSKLLLEQPAKSSTSVCTGIQFRRKALSD-----DVEMPVETASAPLVIASDGLWSGLRRDLSTDVPKQISSFVAILMTHPAMEATVPFRNFGHVILAHPSPILMYQISPTETRVLVDVPGKVPSSSNGDLTKHLLTHVAPQIPDASRAAFVRAVETGPVKSMPNREFMTTQPAHIGRVVMLGDTFNMRHPLTGGGMSVALKDVVLLNNLLKNVDLSSGKDVAAVRRAFEQDRVHHSSTVNILANALYHIFSVPSADDDDKHVLAARATLRESCYEYLKMGGVFMAGPLGLLSALTPKPFVLATHFFMVAGYAAIRCLAPFPTPYRLYHCFQVFHQACVIIMPLLERENVTILAWAPLRALINVIFPY 629          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A485KQF9_9STRA (Squalene monooxygenase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQF9_9STRA)

HSP 1 Score: 417 bits (1073), Expect = 4.200e-131
Identity = 250/537 (46.55%), Postives = 321/537 (59.78%), Query Frame = 1
Query:  322 EVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALLEGDSGEVV-GVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRTMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTPDDPASKD-----TRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPW 1914
            +V+I+G GTAGAS AV LA+QGRKVL+ E+ +  QDR VGEL+QPGGL+AL  LGL  CA+   D ++  GY ++   +                  + L YP+  P+   E  G             A  G GK  G       R FHN  FVQRLR   LAEPNV V+E TVS LL+ D   V  GV YR  A  +       +  T +  APL +V+DG+WSGLR   + ++P+ +S+FV VL+TH    A VP +  GHV+LA PSPIL+YQIS TETRVLVDV G +P  + G L AHL    APQ+P + R AF+EAV  G VKSMPNR    +       ++LGD+ NMRHPLTGGGMTVALKDV LL+ LL+D     AA VAAV   F   R  H++T+NILANALY +FS P D    D      R  L+ +CF+YL +GG +SAGP+GLL  L+P P++LA HFFMVA +     L P P+P   +  +++ H A +IIMPLLE E  T LAW P+   + L+ P+
Sbjct:  130 DVIIIGGGTAGASMAVGLAKQGRKVLVFEKTLEYQDRFVGELMQPGGLQALRTLGLLDCAETEND-IMTHGYYVLTKDDH-----------------IHLPYPDRVPQTFLEYLGVS----------RADNGTGKQYG-------RGFHNGAFVQRLRARLLAEPNVTVIEGTVSKLLQADKANVCQGVVYRRKAPSD-----DVDMPTEQATAPLVIVSDGLWSGLRGALSNDKPKLISSFVAVLMTHPKMEATVPFRQHGHVILAEPSPILMYQISQTETRVLVDVPGKVPSQSSGALEAHLLTHVAPQIPDASRAAFIEAVKTGPVKSMPNREFMTTQPTMGRVIMLGDSFNMRHPLTGGGMTVALKDVVLLNDLLKDADLTRAADVAAVRRAFELERIHHSSTVNILANALYFIFSVPADDDGSDPRRALVRETLRESCFEYLKMGGMFSAGPLGLLCALTPKPFILALHFFMVAGYAGWRCLKPFPSPSRLVLCFQVFHEACRIIMPLLERENVTILAWPPLCALINLIFPY 626          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A397E4M2_9STRA (Squalene monooxygenase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E4M2_9STRA)

HSP 1 Score: 422 bits (1084), Expect = 2.390e-130
Identity = 253/543 (46.59%), Postives = 325/543 (59.85%), Query Frame = 1
Query:  316 SPEVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALL-----EGDSGEVVGVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRT-MPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTP----DDPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPW 1914
            S +V+IVGAGTAG S AV LA+QGRKVL++E+ +  QDR VGEL+QPGGL AL  L L  CA+  TD V   GY+I+ P +                  +ML YP+  P    E  G             A  G GK  G       R FHN  FVQRLR   LAEPNV VVE TVS LL     +  +    G+++R  A  +       E       APL + +DG+WSGLR+  +T+ P+++S+FV +L+TH A  A VP ++ GHV+LAHPSPIL+YQIS TETRVLVDV G +P +++G L  HL    APQ+P + R AF+ AV  G VKSMPNR  M     H    ++LGD  NMRHPLTGGGM+VALKDV LL+ LL++V       VAAV   F + R  H++T+NILANALY +FS P    DD      R  L+ +C++YL +GG + AGP+GLLS L+P P+VLATHFFMVA +     L P PTP      +++ H A  IIMPLLE E  T LAW P+R  + ++ P+
Sbjct:  317 SADVIIVGAGTAGCSMAVGLAKQGRKVLVIEKSLEYQDRFVGELMQPGGLEALRSLDLIECAETSTD-VKTLGYSILLPHSDH----------------IMLPYPDRAPHTFLEYMGLS----------RADNGTGKQHG-------RGFHNGAFVQRLRARMLAEPNVTVVEGTVSKLLLEQPAKSSTSVCTGIQFRRKALSD-----DVEMPVETASAPLVIASDGLWSGLRRDLSTDVPKQISSFVAILMTHPAMEATVPFRNFGHVILAHPSPILMYQISPTETRVLVDVPGKVPSSSNGDLTKHLLTHVAPQIPDASRAAFVRAVETGPVKSMPNREFMTTQPAHIGRVVMLGDTFNMRHPLTGGGMSVALKDVVLLNNLLKNVDLSSGKDVAAVRRAFEQDRVHHSSTVNILANALYHIFSVPSADDDDQHVLAARATLRESCYEYLKMGGVFMAGPLGLLSALTPKPFVLATHFFMVAGYAAIRCLAPFPTPYRLYHCFQVFHQACVIIMPLLERENVTVLAWAPLRALINVIFPY 820          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A1V9ZRK4_9STRA (Squalene monooxygenase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZRK4_9STRA)

HSP 1 Score: 410 bits (1055), Expect = 1.630e-128
Identity = 238/534 (44.57%), Postives = 320/534 (59.93%), Query Frame = 1
Query:  322 EVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALLEGDSGEVV-GVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNRTMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTPDDPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPWEH 1920
            +V+I+G GT G + A+ LA+QG+KVL+ E+ +  QDR VGEL+QPGGL AL  L L  CA+  TD +  DGY I++     +G  D           V+L YPE  P+   E  G    P   A                    GR FHN +FV RLR    A  NV  +E TV+ L+     ++  GV+YR  A  E       +    + +APL +V DG+WSGLR+  +T++P+++S+F+ +L+ H A  A VP +  GHV+LA PSPI++YQIS TETRVLVDV G +P  ++G L  HL E  APQ+P +   AF++AV  G VKSMPNR    +       +++GD+ NMRHPLTGGGM+VAL+D  LLS LL  V F DA A+A     F E R  H++TINILANALY VF+ PD  ++   R +L+ +C+ YL LGG +S+GP+GLL  L+P P+VLATHFFMVA +     L P+PTPG  L  YR+ H A  IIMPLLE E  T LAW P+   + ++ P+  
Sbjct:  126 DVIIIGGGTTGCAMAMGLAKQGKKVLVFEKTLEYQDRFVGELMQPGGLDALRSLDLLDCAETETD-IKADGYYILKTK---KGSEDH----------VVLPYPERIPKTFLEYLGYSRAPNGTA-----------------KQYGRGFHNGKFVDRLRAKVFAHENVTCIEGTVTKLISDTKTDICRGVQYRRKAPAE-----DVDMPVEQAKAPLVIVCDGLWSGLRRELSTDQPKQISSFIAILMKHPAMEASVPFRGYGHVILAEPSPIVVYQISPTETRVLVDVPGKVPSQSNGDLTKHLLEVVAPQMPEASHAAFIQAVNEGPVKSMPNREFMTTQPSLGRCIMIGDSWNMRHPLTGGGMSVALRDAVLLSDLLGKVDFVDADAIAQARHTFEETRVNHSSTINILANALYHVFAIPDGYSNVAAREDLRESCYQYLKLGGMFSSGPLGLLCALTPKPFVLATHFFMVAGYAASRVLGPVPTPGRLLHCYRVFHEACMIIMPLLERENVTILAWTPLACLINVIFPFRR 623          
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Match: A0A024UQZ3_9STRA (Squalene monooxygenase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQZ3_9STRA)

HSP 1 Score: 405 bits (1041), Expect = 2.760e-126
Identity = 250/551 (45.37%), Postives = 323/551 (58.62%), Query Frame = 1
Query:  316 SPEVVIVGAGTAGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQXXXXGPVMLYYPESDPEKKSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLREAALAEPNVRVVEATVSALL-----EGDSGEVV-GVRYREAAKEEAGAGGQEERATHEVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAPQLPASFRPAFLEAVARGDVKSMPNR----TMPASNVHRQGALLLGDALNMRHPLTGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINILANALYQVFSTPD------DPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLSPAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLEEEGSTFLAWWPVRKAVQLVLPWEH 1920
            S +V++VGAGTAG S A+ LA+QGRKVL+VE+ +  QDR VGEL+QPGGL AL  L L  CA+   D V   GY+I+RP +                  +ML YP   P+   E  G                G GK  G       R FHN  FVQRLR   LAEPN+ VVE TVS L+     +G    V  G+++R  +  +       E       APL + +DG+WSGLR+  + ++P+++S+FV +L+TH A  A VP +  GHV+LA PSPIL+YQIS TETRVLVDV G +P + +G L  HL    APQ+P + R AF+ AV  G VKSMPNR    T PA N+ R   ++LGD  NMRHPLTGGGM+VALKDV LL+ LL++V       VAAV   F + R  H++T+NILANALY +FS P       D A    R  L+ +C++YL +GG + AGP+GLLS L+P P VLATHFFMVA       L P PTP       ++ H A  IIMPLLE E  T  AW P+R  + ++ P+ +
Sbjct:  128 SADVIVVGAGTAGCSIAMGLAKQGRKVLVVEKSLEYQDRFVGELMQPGGLEALRSLDLIDCAETSMD-VKTLGYSILRPHHDH----------------IMLPYPNCAPKTLIEYMGF----------TRNDNGTGKQHG-------RGFHNGAFVQRLRARILAEPNITVVEGTVSKLVLEPTTKGSQSNVCKGIQFRRKSPSD-----DVEMPVETALAPLVIASDGLWSGLRRDLSKDQPKQISSFVALLMTHPAMEATVPFRQFGHVILAQPSPILMYQISPTETRVLVDVPGKVPSSTNGDLTKHLLSHVAPQIPEASRAAFIRAVETGPVKSMPNREFMTTQPA-NIGR--VVMLGDTFNMRHPLTGGGMSVALKDVVLLNELLKNVDLSSGKEVAAVRRAFEQDRVHHSSTVNILANALYHIFSVPSTDDDVVDKAVLAARATLRESCYEYLKMGGFFMAGPLGLLSALTPKPVVLATHFFMVAGFAASRCLAPFPTPSRVYHCCQVFHQACIIIMPLLERENVTIFAWAPLRAMINVIFPYRN 636          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11716.1493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHT1_9PHAE0.000e+083.05Squalene monooxygenase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G804_ECTSI0.000e+083.78Squalene monooxygenase n=1 Tax=Ectocarpus siliculo... [more]
A0A836CDI9_9STRA2.740e-21658.09Squalene monooxygenase n=1 Tax=Tribonema minus Tax... [more]
A0A4D9D9N2_9STRA8.690e-15751.01Squalene monooxygenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A6G0XPP6_9STRA3.600e-13346.36Squalene monooxygenase n=1 Tax=Aphanomyces euteich... [more]
W4HAJ6_9STRA7.780e-13346.59Squalene monooxygenase n=3 Tax=Aphanomyces astaci ... [more]
A0A485KQF9_9STRA4.200e-13146.55Squalene monooxygenase n=1 Tax=Aphanomyces stellat... [more]
A0A397E4M2_9STRA2.390e-13046.59Squalene monooxygenase n=4 Tax=Aphanomyces astaci ... [more]
A0A1V9ZRK4_9STRA1.630e-12844.57Squalene monooxygenase n=1 Tax=Achlya hypogyna Tax... [more]
A0A024UQZ3_9STRA2.760e-12645.37Squalene monooxygenase n=2 Tax=Aphanomyces invadan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11716contigL-elsbetiae_contig11716:1158..4377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1019.2
Seed ortholog evalue8.1e-295
Seed eggNOG ortholog2880.D7G804
KEGG rclassRC00201
KEGG koko:K00511
KEGG ReactionR02874
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
Hectar predicted targeting categorysignal anchor
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004497,GO:0004506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006629,GO:0006694,GO:0006950,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0010035,GO:0012505,GO:0016125,GO:0016126,GO:0016491,GO:0016705,GO:0016709,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901700
EggNOG free text desc.squalene monooxygenase activity
EggNOG OGsCOG0654@1,KOG1298@2759
EC1.14.14.17
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionSqualene Monooxygenase (N-terminal region)
Ec32 orthologEc-06_009670.1
Exons2
Model size2833
Cds size1890
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11716.1493.1prot_L-elsbetiae_contig11716.1493.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11716 1206..3482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.5344555-UTR-L-elsbetiae_contig11716:1157..12051622815375.5344555-UTR-L-elsbetiae_contig11716:1157..1205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11716 1158..1205 +
1691682867.4255655-UTR-L-elsbetiae_contig11716:1157..12051691682867.4255655-UTR-L-elsbetiae_contig11716:1157..1205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11716 1158..1205 +
1622815375.5676217-UTR-L-elsbetiae_contig11716:3482..43771622815375.5676217-UTR-L-elsbetiae_contig11716:3482..4377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11716 3483..4377 +
1691682867.4674363-UTR-L-elsbetiae_contig11716:3482..43771691682867.4674363-UTR-L-elsbetiae_contig11716:3482..4377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11716 3483..4377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.5448418-CDS-L-elsbetiae_contig11716:1205..25851622815375.5448418-CDS-L-elsbetiae_contig11716:1205..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11716 1206..2585 +
1691682867.4456182-CDS-L-elsbetiae_contig11716:1205..25851691682867.4456182-CDS-L-elsbetiae_contig11716:1205..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11716 1206..2585 +
1622815375.5551822-CDS-L-elsbetiae_contig11716:2972..34821622815375.5551822-CDS-L-elsbetiae_contig11716:2972..3482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11716 2973..3482 +
1691682867.4573772-CDS-L-elsbetiae_contig11716:2972..34821691682867.4573772-CDS-L-elsbetiae_contig11716:2972..3482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11716 2973..3482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11716.1493.1

>prot_L-elsbetiae_contig11716.1493.1 ID=prot_L-elsbetiae_contig11716.1493.1|Name=mRNA_L-elsbetiae_contig11716.1493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=630bp
MYRIMRLWDGPLNRMNFFPLAVPFIGVFASLTYLFGFFGISIIAGVMDPP
FLSSPAPSPKHRSSFPPAAENQSRQFSPADGSPSSYSLNSPEVVIVGAGT
AGASAAVTLARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDAC
AKEGTDSVIVDGYAIIRPANSGRGLSDGAAQQQQQQGPVMLYYPESDPEK
KSELFGKGVKPAAAAGRETATAGGGKVEGQREVPRGRSFHNCRFVQRLRE
AALAEPNVRVVEATVSALLEGDSGEVVGVRYREAAKEEAGAGGQEERATH
EVRAPLTVVADGIWSGLRKCANTNRPQKMSTFVGVLVTHAADAAPVPHKH
CGHVVLAHPSPILIYQISSTETRVLVDVAGAMPGAADGGLAAHLREKSAP
QLPASFRPAFLEAVARGDVKSMPNRTMPASNVHRQGALLLGDALNMRHPL
TGGGMTVALKDVELLSRLLQDVRFEDAAAVAAVAARFHEGRRAHAATINI
LANALYQVFSTPDDPASKDTRINLQTACFDYLSLGGCYSAGPVGLLSGLS
PAPWVLATHFFMVAFHGCRTHLLPLPTPGGFLRVYRLLHVATKIIMPLLE
EEGSTFLAWWPVRKAVQLVLPWEHERWEN*
back to top

mRNA from alignment at L-elsbetiae_contig11716:1158..4377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11716.1493.1 ID=mRNA_L-elsbetiae_contig11716.1493.1|Name=mRNA_L-elsbetiae_contig11716.1493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3220bp|location=Sequence derived from alignment at L-elsbetiae_contig11716:1158..4377+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTTTACGTGGTGAACTACGCCGCCGTGGCGGTGTTCGCCGCGTCCAT GTACCGGATCATGCGCCTGTGGGACGGGCCCCTGAACCGGATGAACTTCT TCCCTCTCGCCGTCCCCTTCATCGGCGTCTTCGCCTCATTGACCTACCTC TTCGGGTTTTTCGGCATCAGCATCATCGCGGGGGTGATGGACCCCCCCTT CCTCTCGTCCCCGGCACCGAGCCCCAAGCACAGGTCCTCGTTTCCCCCCG CCGCAGAAAACCAGTCCAGACAGTTTTCCCCGGCGGACGGTAGTCCGTCG AGCTACAGCCTCAACAGCCCTGAGGTGGTGATCGTGGGAGCGGGGACGGC GGGAGCATCAGCCGCGGTCACCCTCGCGCGGCAGGGGCGCAAGGTCCTGC TGGTGGAGAGGTGCATGAGCGAGCAGGACCGTATCGTCGGGGAGCTGCTG CAGCCTGGCGGGCTCCGAGCGCTGGAACGCCTGGGGCTGGATGCGTGCGC CAAGGAGGGCACGGACAGCGTCATCGTGGACGGCTACGCGATCATCAGAC CCGCGAACAGCGGGCGCGGGCTCTCCGACGGTGCCGCGCAGCAGCAGCAG CAGCAGGGCCCCGTAATGCTCTACTACCCCGAGAGCGACCCGGAGAAAAA GTCGGAGCTTTTTGGGAAGGGCGTCAAGCCCGCCGCCGCCGCCGGGAGAG AGACGGCGACAGCAGGCGGCGGCAAGGTTGAAGGGCAGCGGGAGGTTCCG CGGGGGCGAAGCTTCCACAACTGCCGTTTCGTGCAGAGGCTTAGAGAGGC CGCGCTGGCGGAGCCCAACGTTCGGGTCGTCGAAGCTACCGTGTCGGCCC TGCTCGAAGGCGACAGCGGCGAGGTCGTGGGAGTGCGGTATCGCGAGGCG GCGAAGGAAGAGGCCGGGGCCGGGGGTCAAGAGGAGAGAGCCACCCACGA GGTCCGCGCTCCGCTGACGGTCGTGGCGGACGGCATCTGGAGCGGCCTGA GAAAATGCGCCAACACCAACCGCCCCCAGAAGATGTCCACCTTCGTGGGC GTCCTCGTTACCCACGCCGCCGACGCCGCCCCGGTGCCCCACAAGCACTG CGGCCACGTCGTGCTGGCGCACCCTTCCCCGATCCTGATCTACCAGATCT CCTCCACGGAGACGCGGGTCCTGGTGGACGTCGCCGGAGCCATGCCCGGC GCGGCCGACGGAGGCCTCGCGGCGCACCTGAGGGAGAAGTCCGCGCCGCA GCTCCCGGCCTCGTTCCGGCCGGCGTTTCTGGAGGCGGTCGCCCGCGGAG ACGTGAAGTCGATGCCGAACAGGACGATGCCCGCGTCGAACGTGCACCGC CAGGGGGCTCTGTTGCTCGGGGACGCCCTCAACATGAGGCACCCGCTCAC TGGGGGAGGAATGACCGTTGCCCTCAAGGTATAAGGGGGGAATCTACTTG CTCAAATGGGTTTCGTTTCGGTGACGCGTTTAAAGGAGAGGCCGCATGTA GTCGTTCGCTTTGCCTTATTTTGGTGTGGTGCTCGTTCTTCTTTCTTTTT TTTGTCTGGACAGGACCATCGTCTGTCCATACAGCAGCATTATACTTCTA GCATGGTGTGGCCGTGGGACTACTTGTGCTTGCATTGGAATCCCGCGGTC TGTCTGTGCGCTGTTGCACGTGCACTGGTTTCGTCTGTGCTTTGCCAGGA TGTACTATTTTTTACCACTTTGGCGTTTGGGCGGCTACATATCACAAATG TGTAAACTCAAGACCGCGCTTTTTTCCCGTTCCGTTCTCCCCGTCATTTT CCTTTGTTTCACCAGGACGTGGAGCTGCTTTCGAGACTTCTGCAGGACGT CCGTTTCGAGGACGCCGCGGCGGTGGCGGCTGTTGCGGCGCGCTTCCACG AGGGGCGAAGAGCGCACGCCGCGACCATCAACATCCTCGCAAACGCCCTC TACCAGGTGTTCAGCACGCCGGACGACCCGGCATCCAAGGACACCCGCAT CAACCTGCAGACGGCGTGCTTCGACTACCTCAGCCTCGGCGGCTGCTACT CCGCCGGACCGGTCGGACTTCTCTCCGGGCTTAGCCCCGCCCCGTGGGTG CTGGCGACGCACTTCTTCATGGTGGCGTTCCACGGCTGCCGCACGCACCT GCTGCCGCTGCCGACGCCGGGAGGGTTCTTGCGCGTGTACCGGCTGCTGC ACGTAGCGACGAAGATCATCATGCCCCTGCTTGAGGAGGAAGGGTCGACG TTTTTGGCCTGGTGGCCCGTCAGAAAGGCGGTGCAGCTCGTGCTGCCTTG GGAGCACGAGAGATGGGAAAACTGAAGACTTGTGTGGCGTTTTTTTGTCG TCTGAGAATTATGGTGTTTACGAAAGTGTTAGGTATGATTACATAGCATC TTTTTCTGCATAGGAACTAGTCTGTACAGTCAGTGGGACATGGCGTTGCC GATGGGTATAGTAATAGCTGTTTCACAAGGCGTTGTGTTGGTTGGAGTTA GCGACGTGTTGGGAATGGAGGAATCCACACGGCTGTATGAGGTGTGGAGA GCTCTTGGGCGAGACAGCTATCGGACGGTTGATTCGCCCATCACGAAATT GAGGATCATGACCGATTCAGGAGGCAGCGTTTGGCGTCTTGGAAAAAATT AGGAGGTAGGACAGATGCCATTGTTACCGCGGGGAAGGCGTTGGTTGCTG CAGCCGGGGTGCTCCCAAATAGGGCGAACGGAGCGTCGTGATGGTTCACT TGCTCGTGGTGGTTTGGGCACGGGCCACGCAGTCCGGCGGGCAGAGCCAC ATTTTTGTGAAGCAGAGTGAGTTTTATGTTTGCGCGGACTCTTTTTTGTG CCGGCTGATCGCTCTATTTTTTTCCCCCAAGGTGTTTTGGGGCGATACAG TCGTAGCCTCACTAGAGGTGTTGATACTTAACACGCAGTGGGGTCAGTGT TCTCGCACAGGTAATATTTAGCTTTTATATGCGGAGAACATCGGGAAGTT GCGGGCTGCGATTTGTGTGATCCATGTATGCGTGTGTATGTGGTGCGATA GTGTCATCCGTGTCGGGAGAGAGGTTAACTCGTATCAGAGGTGTTTTCTT ATGCAGCTCACGTTCGTGTTGTATGTGAGTTCTGACTAGCGGTATGGCCA CCGCTCTGCCGGAGAACGACCAACTGCATTTGTCCCGGAGACGTTTCCCG AACAAAAAAAGTCGACTCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11716:1158..4377+

>mRNA_L-elsbetiae_contig11716.1493.1 ID=mRNA_L-elsbetiae_contig11716.1493.1|Name=mRNA_L-elsbetiae_contig11716.1493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3780bp|location=Sequence derived from alignment at L-elsbetiae_contig11716:1158..4377+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCGGATCATGCGCCTGTGGGACGGGCCCCTGAACCGGATGAACTT
CTTCCCTCTCGCCGTCCCCTTCATCGGCGTCTTCGCCTCATTGACCTACC
TCTTCGGGTTTTTCGGCATCAGCATCATCGCGGGGGTGATGGACCCCCCC
TTCCTCTCGTCCCCGGCACCGAGCCCCAAGCACAGGTCCTCGTTTCCCCC
CGCCGCAGAAAACCAGTCCAGACAGTTTTCCCCGGCGGACGGTAGTCCGT
CGAGCTACAGCCTCAACAGCCCTGAGGTGGTGATCGTGGGAGCGGGGACG
GCGGGAGCATCAGCCGCGGTCACCCTCGCGCGGCAGGGGCGCAAGGTCCT
GCTGGTGGAGAGGTGCATGAGCGAGCAGGACCGTATCGTCGGGGAGCTGC
TGCAGCCTGGCGGGCTCCGAGCGCTGGAACGCCTGGGGCTGGATGCGTGC
GCCAAGGAGGGCACGGACAGCGTCATCGTGGACGGCTACGCGATCATCAG
ACCCGCGAACAGCGGGCGCGGGCTCTCCGACGGTGCCGCGCAGCAGCAGC
AGCAGCAGGGCCCCGTAATGCTCTACTACCCCGAGAGCGACCCGGAGAAA
AAGTCGGAGCTTTTTGGGAAGGGCGTCAAGCCCGCCGCCGCCGCCGGGAG
AGAGACGGCGACAGCAGGCGGCGGCAAGGTTGAAGGGCAGCGGGAGGTTC
CGCGGGGGCGAAGCTTCCACAACTGCCGTTTCGTGCAGAGGCTTAGAGAG
GCCGCGCTGGCGGAGCCCAACGTTCGGGTCGTCGAAGCTACCGTGTCGGC
CCTGCTCGAAGGCGACAGCGGCGAGGTCGTGGGAGTGCGGTATCGCGAGG
CGGCGAAGGAAGAGGCCGGGGCCGGGGGTCAAGAGGAGAGAGCCACCCAC
GAGGTCCGCGCTCCGCTGACGGTCGTGGCGGACGGCATCTGGAGCGGCCT
GAGAAAATGCGCCAACACCAACCGCCCCCAGAAGATGTCCACCTTCGTGG
GCGTCCTCGTTACCCACGCCGCCGACGCCGCCCCGGTGCCCCACAAGCAC
TGCGGCCACGTCGTGCTGGCGCACCCTTCCCCGATCCTGATCTACCAGAT
CTCCTCCACGGAGACGCGGGTCCTGGTGGACGTCGCCGGAGCCATGCCCG
GCGCGGCCGACGGAGGCCTCGCGGCGCACCTGAGGGAGAAGTCCGCGCCG
CAGCTCCCGGCCTCGTTCCGGCCGGCGTTTCTGGAGGCGGTCGCCCGCGG
AGACGTGAAGTCGATGCCGAACAGGACGATGCCCGCGTCGAACGTGCACC
GCCAGGGGGCTCTGTTGCTCGGGGACGCCCTCAACATGAGGCACCCGCTC
ACTGGGGGAGGAATGACCGTTGCCCTCAAGATGTACCGGATCATGCGCCT
GTGGGACGGGCCCCTGAACCGGATGAACTTCTTCCCTCTCGCCGTCCCCT
TCATCGGCGTCTTCGCCTCATTGACCTACCTCTTCGGGTTTTTCGGCATC
AGCATCATCGCGGGGGTGATGGACCCCCCCTTCCTCTCGTCCCCGGCACC
GAGCCCCAAGCACAGGTCCTCGTTTCCCCCCGCCGCAGAAAACCAGTCCA
GACAGTTTTCCCCGGCGGACGGTAGTCCGTCGAGCTACAGCCTCAACAGC
CCTGAGGTGGTGATCGTGGGAGCGGGGACGGCGGGAGCATCAGCCGCGGT
CACCCTCGCGCGGCAGGGGCGCAAGGTCCTGCTGGTGGAGAGGTGCATGA
GCGAGCAGGACCGTATCGTCGGGGAGCTGCTGCAGCCTGGCGGGCTCCGA
GCGCTGGAACGCCTGGGGCTGGATGCGTGCGCCAAGGAGGGCACGGACAG
CGTCATCGTGGACGGCTACGCGATCATCAGACCCGCGAACAGCGGGCGCG
GGCTCTCCGACGGTGCCGCGCAGCAGCAGCAGCAGCAGGGCCCCGTAATG
CTCTACTACCCCGAGAGCGACCCGGAGAAAAAGTCGGAGCTTTTTGGGAA
GGGCGTCAAGCCCGCCGCCGCCGCCGGGAGAGAGACGGCGACAGCAGGCG
GCGGCAAGGTTGAAGGGCAGCGGGAGGTTCCGCGGGGGCGAAGCTTCCAC
AACTGCCGTTTCGTGCAGAGGCTTAGAGAGGCCGCGCTGGCGGAGCCCAA
CGTTCGGGTCGTCGAAGCTACCGTGTCGGCCCTGCTCGAAGGCGACAGCG
GCGAGGTCGTGGGAGTGCGGTATCGCGAGGCGGCGAAGGAAGAGGCCGGG
GCCGGGGGTCAAGAGGAGAGAGCCACCCACGAGGTCCGCGCTCCGCTGAC
GGTCGTGGCGGACGGCATCTGGAGCGGCCTGAGAAAATGCGCCAACACCA
ACCGCCCCCAGAAGATGTCCACCTTCGTGGGCGTCCTCGTTACCCACGCC
GCCGACGCCGCCCCGGTGCCCCACAAGCACTGCGGCCACGTCGTGCTGGC
GCACCCTTCCCCGATCCTGATCTACCAGATCTCCTCCACGGAGACGCGGG
TCCTGGTGGACGTCGCCGGAGCCATGCCCGGCGCGGCCGACGGAGGCCTC
GCGGCGCACCTGAGGGAGAAGTCCGCGCCGCAGCTCCCGGCCTCGTTCCG
GCCGGCGTTTCTGGAGGCGGTCGCCCGCGGAGACGTGAAGTCGATGCCGA
ACAGGACGATGCCCGCGTCGAACGTGCACCGCCAGGGGGCTCTGTTGCTC
GGGGACGCCCTCAACATGAGGCACCCGCTCACTGGGGGAGGAATGACCGT
TGCCCTCAAGGACGTGGAGCTGCTTTCGAGACTTCTGCAGGACGTCCGTT
TCGAGGACGCCGCGGCGGTGGCGGCTGTTGCGGCGCGCTTCCACGAGGGG
CGAAGAGCGCACGCCGCGACCATCAACATCCTCGCAAACGCCCTCTACCA
GGTGTTCAGCACGCCGGACGACCCGGCATCCAAGGACACCCGCATCAACC
TGCAGACGGCGTGCTTCGACTACCTCAGCCTCGGCGGCTGCTACTCCGCC
GGACCGGTCGGACTTCTCTCCGGGCTTAGCCCCGCCCCGTGGGTGCTGGC
GACGCACTTCTTCATGGTGGCGTTCCACGGCTGCCGCACGCACCTGCTGC
CGCTGCCGACGCCGGGAGGGTTCTTGCGCGTGTACCGGCTGCTGCACGTA
GCGACGAAGATCATCATGCCCCTGCTTGAGGAGGAAGGGTCGACGTTTTT
GGCCTGGTGGCCCGTCAGAAAGGCGGTGCAGCTCGTGCTGCCTTGGGAGC
ACGAGAGATGGGAAAACTGAGACGTGGAGCTGCTTTCGAGACTTCTGCAG
GACGTCCGTTTCGAGGACGCCGCGGCGGTGGCGGCTGTTGCGGCGCGCTT
CCACGAGGGGCGAAGAGCGCACGCCGCGACCATCAACATCCTCGCAAACG
CCCTCTACCAGGTGTTCAGCACGCCGGACGACCCGGCATCCAAGGACACC
CGCATCAACCTGCAGACGGCGTGCTTCGACTACCTCAGCCTCGGCGGCTG
CTACTCCGCCGGACCGGTCGGACTTCTCTCCGGGCTTAGCCCCGCCCCGT
GGGTGCTGGCGACGCACTTCTTCATGGTGGCGTTCCACGGCTGCCGCACG
CACCTGCTGCCGCTGCCGACGCCGGGAGGGTTCTTGCGCGTGTACCGGCT
GCTGCACGTAGCGACGAAGATCATCATGCCCCTGCTTGAGGAGGAAGGGT
CGACGTTTTTGGCCTGGTGGCCCGTCAGAAAGGCGGTGCAGCTCGTGCTG
CCTTGGGAGCACGAGAGATGGGAAAACTGA
back to top