mRNA_L-elsbetiae_contig11693.1468.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11693.1468.1
Unique NamemRNA_L-elsbetiae_contig11693.1468.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11693.1468.1 vs. uniprot
Match: D8LCS1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCS1_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 9.560e-74
Identity = 127/227 (55.95%), Postives = 166/227 (73.13%), Query Frame = 1 
Query:    1 GLVFLVVLSLLGHGDALFGRGXXXXXXXXXXXXXXXXXXXXXAAAKFDPEGLQAAASQASERVMMWGTTTIFQLKAAVQLKGQLERLQSAAGQAGD--KSLLKMDPAMYKEVMGGALGGVFLMLNSPSMGKVSDLAKALMTDQRRQVRVVDLDQKVQESFAGGKG-PTITKGPKGFLEGALLNREVAAAHNKFMADVEALSSSPLAKKVGASAEAYHDALLVYATNE 672
            GL  LV+LSLLG G+ALFGRG                     A  K DP+ ++ AA QASER++MWGTTTIFQLK A ++KG +ERLQ+++ Q     ++++KMDP MYK V+G +LG VFLMLNSP+ GK+S+ AK+++ D+ RQ+R++D+DQ+ +ESFA  KG PT  KGP+G+LEGALLN+EVAAAH KF+ADVEALSSS + KK  ASAEAYH A+L Y T+E
Sbjct:    9 GLAILVLLSLLGDGEALFGRGKGGGGAATAAKKTSRGTKGSPARTKLDPDMMETAAMQASERLLMWGTTTIFQLKEAARMKGHVERLQASSQQVDQNGRAMVKMDPPMYKAVVGSSLGNVFLMLNSPNFGKLSEKAKSMLKDEGRQMRLIDMDQRTKESFAAQKGQPTGVKGPEGYLEGALLNKEVAAAHEKFLADVEALSSSAVGKKAAASAEAYHQAMLAYTTSE 235
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11693.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCS1_ECTSI9.560e-7455.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11693contigL-elsbetiae_contig11693:336..4726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_001860.1
Exons5
Model size1307
Cds size711
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11693.1468.1prot_L-elsbetiae_contig11693.1468.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11693 932..4726 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.361834-UTR-L-elsbetiae_contig11693:335..9311622815371.361834-UTR-L-elsbetiae_contig11693:335..931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11693 336..931 -
1691682866.2640295-UTR-L-elsbetiae_contig11693:335..9311691682866.2640295-UTR-L-elsbetiae_contig11693:335..931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11693 336..931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.3726082-CDS-L-elsbetiae_contig11693:931..10571622815371.3726082-CDS-L-elsbetiae_contig11693:931..1057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 932..1057 -
1691682866.2738822-CDS-L-elsbetiae_contig11693:931..10571691682866.2738822-CDS-L-elsbetiae_contig11693:931..1057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 932..1057 -
1622815371.3812418-CDS-L-elsbetiae_contig11693:2571..27491622815371.3812418-CDS-L-elsbetiae_contig11693:2571..2749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 2572..2749 -
1691682866.283621-CDS-L-elsbetiae_contig11693:2571..27491691682866.283621-CDS-L-elsbetiae_contig11693:2571..2749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 2572..2749 -
1622815371.3898025-CDS-L-elsbetiae_contig11693:3649..38821622815371.3898025-CDS-L-elsbetiae_contig11693:3649..3882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 3650..3882 -
1691682866.2929232-CDS-L-elsbetiae_contig11693:3649..38821691682866.2929232-CDS-L-elsbetiae_contig11693:3649..3882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 3650..3882 -
1622815371.4001977-CDS-L-elsbetiae_contig11693:4463..45401622815371.4001977-CDS-L-elsbetiae_contig11693:4463..4540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 4464..4540 -
1691682866.3021739-CDS-L-elsbetiae_contig11693:4463..45401691682866.3021739-CDS-L-elsbetiae_contig11693:4463..4540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 4464..4540 -
1622815371.4402056-CDS-L-elsbetiae_contig11693:4629..47261622815371.4402056-CDS-L-elsbetiae_contig11693:4629..4726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 4630..4726 -
1691682866.3139503-CDS-L-elsbetiae_contig11693:4629..47261691682866.3139503-CDS-L-elsbetiae_contig11693:4629..4726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11693 4630..4726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11693.1468.1

>prot_L-elsbetiae_contig11693.1468.1 ID=prot_L-elsbetiae_contig11693.1468.1|Name=mRNA_L-elsbetiae_contig11693.1468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
GLVFLVVLSLLGHGDALFGRGKGGGGGGVGCGVSGKSSISAAAAAKFDPE
GLQAAASQASERVMMWGTTTIFQLKAAVQLKGQLERLQSAAGQAGDKSLL
KMDPAMYKEVMGGALGGVFLMLNSPSMGKVSDLAKALMTDQRRQVRVVDL
DQKVQESFAGGKGPTITKGPKGFLEGALLNREVAAAHNKFMADVEALSSS
PLAKKVGASAEAYHDALLVYATNEPAAAAASKKMKK*
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mRNA from alignment at L-elsbetiae_contig11693:336..4726-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11693.1468.1 ID=mRNA_L-elsbetiae_contig11693.1468.1|Name=mRNA_L-elsbetiae_contig11693.1468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4391bp|location=Sequence derived from alignment at L-elsbetiae_contig11693:336..4726- (Laminarionema elsbetiae ELsaHSoW15)
GGTTTGGTTTTCCTCGTGGTCCTGTCGCTCCTGGGCCACGGGGACGCTCT
ATTCGGGAGAGGGAAGGGCGGCGGCGGCGGGGGTGTGGGTTGTGGGGGTG
TGCCGGGCGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGCAGTGTCCGGGAAAAGT
TCCATCTCGGCCGCGGCGGCGGCCAAGTTCGATCCCGAGGGGTTGCAGGC
GGCGGCAAGCCAGGTAGGATTTGTCCGTTCAAGCTTCTGGAACTTTTGCT
TGCTCAGCTTGTTTTCTCGTTATCTCTGTTCCTTCCATCAGCTTGCGTGG
GTGCGTGTGGGTGTTGTTCCAAGCAACCGGAGGGGGGGGGGGCAGCTGTG
TTGATCGAAGGTCTGCTCTCCTTTCCCCCCGACAAGCCTAGCTGGCATGG
AACCCATGCTCGCCCTCGTTGGACGAGGCGCGACACACGATAGCAGCAGC
GTGGCGTGATAATATCTGCCGGCGGTGGTGAGGAGGAACGACAGACGGGC
GTGTGTTTCCATATCACGATGTACATACTGATGTACACCTGAAATCTACC
CGGCGGACGTCAAGCCCGGACCGCCTTTCTACCGCCAGTGGTCTCGATAC
AGAGCAAGCCAGTCGTGCAATTGCTCGGTCTTCCTTCTTCCTTACGGTGC
CATGCTAAATATGTGATTTTTTTTGTTTCTCATATCGACACTGGTATCTG
CTGTCTCTGGCTTTTGCCCCGAAGAGGCCCCGGATATTTCTGACACCGAT
CAAAGAAAGCCAAGTATTGTATTTGCCTGTCTCTCGTTTGCCAGGCCTCG
GAGCGAGTCATGATGTGGGGAACCACGACCATTTTCCAGCTCAAGGCGGC
GGTCCAGCTGAAGGGGCAGCTGGAGCGGCTGCAGTCGGCCGCCGGCCAAG
CCGGCGACAAGAGCTTGCTCAAGATGGACCCCGCCATGTACAAGGAGGTC
ATGGGGGGTGCCCTGGGGGGTGTGTTTCTGATGCTCAACTCGCCGAGCAT
GGGCAAGGTTTCGGACTTGGCGAAAGCGTGAGTTTTTGGGATCTTTTATC
GTGGTGGCACCACGGTTCGGTTGGGTACTCTGGCTAAGATGCCCTCGTGG
CGAAGGAGCCGATCGAGCACTCTGGAAATAAATGTCAAGAAGAAGAAACA
AAATCGTGATCTGGCAAGGGTGGTTTGTTTTGTCCGGGCCGGCGTTGATC
TGCAGGGTACGTGCTACATATTGCCCTGAATAGCTTTGGCCGCGCGTGGC
CACTTTTCCGCGCGTGTAGCAGCCCTGCGCCCGGGCCGTGAGTGTCTTAT
TTTCCGGTTTCGGCGTGGAACCAATCTTGGTCGCAAAATCTCGGGTTGTC
TCTCGCTTCGAGGCTGGTGTTGATCTGGAGTTGCTGAAGGGTTTGGAGGC
GGCGGCAGGAGGCGGGGAAGTTTAATTGTTTTGTTGCTGAAAGAGCGCGA
GCGCGAGCATACATGCATATTCTCAAGATCGCGCGTATTTAACTACATCT
TCCGCGCCCCCCGCCCGGCCAGCGGGCGCGGGGCAATTGCACCGGTCGGT
AGAAACCGGACTTGGAGTCCTGTCAGCAAGCCAGTTAGTTGGCCGTGTTC
TTTGTTACGTTGCTTCCTTTTTATCTATATGGTGGATTCGCCAGACGTCG
GCGGTGTTGACGATGCACGACATGTCCCGGCAGTGTCCCTCTCTTCGCGG
CAGGCCGGCTTGCTCGGGACGCCGTTGCTTCGTGGCGTCCTGTTCGCATA
CCCCAAAATCGTGAGGGCACATGTACGGGGCACCTTTTTTCTAAGTTGCT
GCAATACTGTACGTACATATGCAAGTGTCTTGGAGCTGTTGTTTTTCCCT
TCTCCCGCGTTTTACGACCCCCCCCCCCCATCCATGCTGAGATCGCAACG
CCTCACGCTTGTGCAAAACCGCGACAGGCTGATGACAGACCAGCGACGAC
AGGTTCGGGTGGTTGACCTGGACCAGAAGGTGCAGGAGTCATTCGCCGGC
GGGAAGGGACCTACGATCACTAAGGGTCCCAAGGGGTTTTTGGAGGGCGC
CCTGCTCAACAGGGAGGTCGCCGCGGCCCACAACAAGTTCATGGCGGACG
TGGAGGTGCGCGCCGCCTTTGGTATTTGAGGTTCTGGTGGAGTGTCCCAC
CCTTTGGTGTCTGGCGTTTCGTGCGTCATAAAAAAAATGTGGTTTGTAGT
GTGGTCGTTGTTTGTTATCTTTTGGCCCTTGGTGCGCCCTGGTCCATGAA
ATCTAGACACTTCTACCTACCGCTCCGTACTTGCTGTGCGTGCATACCGT
CGCCGTTTTAGTGCGCGTCTTTTTTTTTTTTCTTGTCTCTTTAACTCCAG
TCGTATACCTTTTGTGAGGGTACACTCAGTGGCGTTGTAATCGAGTGGTT
TGTTTCTATCCTGGGTATTTGTATAGTGATATCTCCTCTGTTATTAATAA
CAGGCTCAACAAGACAGATGGTTGCCATCTTGTGTATCGGAATATATTCA
TGTTAGGAATATTTTATTGTTTTTTGACCCCCGACCTTCGTTTGGTTCTG
GCTTGTAGGCTTGAACTGAAGCGCCGAAGTGCCGATATTAGTTGAGCTTC
TCCAAATCTCACTCACTCCCGTGGCTCCTGTTGTGAGGTCACCGTGTGCG
AGAAGGCCTTGCAGTGCGCCCATGTGTCTCCCCTTGGGAGATCGTTGTGT
GGCGATCCTTCGAGTTCCCCGCCTGTTGTCGCAAGGAGGTGTCACACTGT
ATGTATTTACATAGCCATAATATCTCGCAGCCTCTGTATGTATGTATTGT
TGTCTTCACATTGAAAACCGTTCCAATCTCTCCATCCAGTACCTCTCAAT
GTCCGTACTAAGCCAACGCTTGATGCGGTCAATTCCCGTGGTCACAGGCT
AACTTATACCCAAGAAAAGGTACACGAAAAATAAAGTGGACCCGAAGGGC
CAGCAAAGCAATAATAAAACAGATATCGAATCTGGAGCCCTTCGCTCCCC
TCTACACGCTATGTGAGGTAAAACAGAACTGGAACAGCCAACACTACTAT
CTTGGTGCCCCAACAAAGCCGGGGGGTTCCACGCCGGGTTCTCGCCGGCC
AGGCCCTAGATACTACGTTCTCACACTGTGTCCTCTCAAAGCAATGCACG
GCTCCCCGACTGCGCGCACCGATGGGAGTCACGCCGCTGGTTGACGAGCA
CGCTGTGCTGTAAGCTAGTGTCGATGTGATTGTTCCCGCACTCTACAAAC
AACACCCATCTCTCGGGAGGTCTGGATGACGCGCTCGCCGCCGAAAGGCG
TTCGTTTTTTTCCCCGTGAACTGCCGTGACAAGAGCTTGGGTGTTTTTCT
CGATTGCCGCTCAGGACATGCACGCCGCAAAGTGTATTTTTTACCTACTG
CTGTAAGGGTGATCCACCCTCACACTTCGGCACCCTGCCCCGCTCGGCAA
ACCTGATGGTTGTTTCATTTTTGTGAGCCTCGCATTGTGTTGCGTGTTTT
CCACGCGCGCGTGTTGAAACCGTAGCCCCCGCTCGGATGAAGTTCTGTCC
TCAACGCCGCTGTTTCCCCTCTTGCTCTCGTGCTCGGAATGCCCGCTTTC
CCGTGCCCGCCCGCCGTAGGCATTGTCAAGCTCCCCATTGGCGAAGAAGG
TTGGTGCCAGCGCCGAGGCGTACCACGACGCCTTGCTCGTGTATGCTACC
AATGAACCGGCCGCCGCTGCTGCTTCGAAAAAAATGAAAAAATAGTTCTT
CGTTATTTAGCCTGAAAATAGGGTCCGGTGCTCTTGATCTGTAGACTCAT
ACATGTGACAGCGCATCTCTGGCGGTTTCATGGAAGCATCCTTTGTTTGA
TTTTTTTCGGGTGTGACCTGTTGCGGTGCTGTGCCCGCACTGAGTACAAG
GCTATCCCGGCTCAGCCGAGGGGTATATAGGCTCCCTGCCATAAAGCCCC
CAGTTCTCAAAAAGAGCTGTGGGGGCAGCGTCGGGTGGTATTTATCTAGG
AAATAGAGTAAAAAATCCCCCACAGCCACTTTTTCGGGATTGGAGGCCCT
GCTGCGGGAAGCCTATTATGCCAGTCCATGTTTTTTGGGTGCCCTTCGTG
AGCTGTTGTGCTGAGAGAGGTCGTCGTGTTTGCCCTCAACGGTATGTAGT
TTGTTGGTGTTGCTCAGGTTTGGTTCATCGTGTAGCTGGGTCGATGTTTG
AAGAGGTTAGGTTTTCATGTCTTCAGGAGAGCACAAAAAAATAATTTGTC
GGTGCTCCGTACACGGGTGCTGTACGAAAGGGGTTTCACACACGTTAGCA
AATATCATCACGCCTACATGCATAATAATCGTGTCCAAATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11693:336..4726-

>mRNA_L-elsbetiae_contig11693.1468.1 ID=mRNA_L-elsbetiae_contig11693.1468.1|Name=mRNA_L-elsbetiae_contig11693.1468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig11693:336..4726- (Laminarionema elsbetiae ELsaHSoW15)
GGTTTGGTTTTCCTCGTGGTCCTGTCGCTCCTGGGCCACGGGGACGCTCT
ATTCGGGAGAGGGAAGGGCGGCGGCGGCGGGGGTGTGGGTTGTGGGGGGT
TTGGTTTTCCTCGTGGTCCTGTCGCTCCTGGGCCACGGGGACGCTCTATT
CGGGAGAGGGAAGGGCGGCGGCGGCGGGGGTGTGGGTTGTGGGGTGTCCG
GGAAAAGTTCCATCTCGGCCGCGGCGGCGGCCAAGTTCGATCCCGAGGGG
TTGCAGGCGGCGGCAAGCCAGTGTCCGGGAAAAGTTCCATCTCGGCCGCG
GCGGCGGCCAAGTTCGATCCCGAGGGGTTGCAGGCGGCGGCAAGCCAGGC
CTCGGAGCGAGTCATGATGTGGGGAACCACGACCATTTTCCAGCTCAAGG
CGGCGGTCCAGCTGAAGGGGCAGCTGGAGCGGCTGCAGTCGGCCGCCGGC
CAAGCCGGCGACAAGAGCTTGCTCAAGATGGACCCCGCCATGTACAAGGA
GGTCATGGGGGGTGCCCTGGGGGGTGTGTTTCTGATGCTCAACTCGCCGA
GCATGGGCAAGGTTTCGGACTTGGCGAAAGCGCCTCGGAGCGAGTCATGA
TGTGGGGAACCACGACCATTTTCCAGCTCAAGGCGGCGGTCCAGCTGAAG
GGGCAGCTGGAGCGGCTGCAGTCGGCCGCCGGCCAAGCCGGCGACAAGAG
CTTGCTCAAGATGGACCCCGCCATGTACAAGGAGGTCATGGGGGGTGCCC
TGGGGGGTGTGTTTCTGATGCTCAACTCGCCGAGCATGGGCAAGGTTTCG
GACTTGGCGAAAGCGCTGATGACAGACCAGCGACGACAGGTTCGGGTGGT
TGACCTGGACCAGAAGGTGCAGGAGTCATTCGCCGGCGGGAAGGGACCTA
CGATCACTAAGGGTCCCAAGGGGTTTTTGGAGGGCGCCCTGCTCAACAGG
GAGGTCGCCGCGGCCCACAACAAGTTCATGGCGGACGTGGAGGCTGATGA
CAGACCAGCGACGACAGGTTCGGGTGGTTGACCTGGACCAGAAGGTGCAG
GAGTCATTCGCCGGCGGGAAGGGACCTACGATCACTAAGGGTCCCAAGGG
GTTTTTGGAGGGCGCCCTGCTCAACAGGGAGGTCGCCGCGGCCCACAACA
AGTTCATGGCGGACGTGGAGGCATTGTCAAGCTCCCCATTGGCGAAGAAG
GTTGGTGCCAGCGCCGAGGCGTACCACGACGCCTTGCTCGTGTATGCTAC
CAATGAACCGGCCGCCGCTGCTGCTTCGAAAAAAATGAAAAAATAGGCAT
TGTCAAGCTCCCCATTGGCGAAGAAGGTTGGTGCCAGCGCCGAGGCGTAC
CACGACGCCTTGCTCGTGTATGCTACCAATGAACCGGCCGCCGCTGCTGC
TTCGAAAAAAATGAAAAAATAG
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