mRNA_L-elsbetiae_contig1167.1447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1167.1447.1
Unique NamemRNA_L-elsbetiae_contig1167.1447.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: D7FSN0_ECTSI (Mitochondrial import inner membrane translocase subunit TIM16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSN0_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 9.990e-69
Identity = 119/130 (91.54%), Postives = 125/130 (96.15%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEVKPDLIKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQAEEEAALRAKGKAAG 390
            MA+PFAR++AQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGE+KPDLIK+RYDQYF INDPDKGGSFYLQSKVFRAKEALDEQLALQAKQA EEAAL+AK  A G
Sbjct:    1 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQASEEAALKAKAAAGG 130          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: A0A835YVS4_9STRA (Mitochondrial import inner membrane translocase subunit TIM16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS4_9STRA)

HSP 1 Score: 139 bits (350), Expect = 3.480e-39
Identity = 76/118 (64.41%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEVKPDLIKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQAEE 354
            M+ P ARV+AQL V  AGIVSRAFV+AYSQAV NARTGT +  K+M+RTSK+ST EA+Q+LNL K E+ P  I +++ +YFE NDP+KGGSFYLQSKVFRA+E+L E L L AK+ E+
Sbjct:    1 MSGPLARVIAQLMVTGAGIVSRAFVAAYSQAVQNARTGTQQQVKSMTRTSKMSTAEALQVLNLSKAEMDPTRISQQFARYFESNDPNKGGSFYLQSKVFRARESLHETLELAAKREEQ 118          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: A0A7S3V4X6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4X6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.200e-25
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   10 PFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSR----TSKLSTLEAMQILNLQKGEVKPDLIKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALDE 321
            P ARVLAQ AV   GI++RA  +AY  A++NAR G +++AKA S       K+S  EAMQ+LNL KG+V P  ++K++D+YF  N  +KGGSFYLQSK++RAKE LDE
Sbjct:    5 PIARVLAQAAVMGIGIMARAIPAAYGAALNNARKGGVDAAKANSEGIFGKKKISVDEAMQVLNLVKGDVSPKAVQKQFDRYFATNAVEKGGSFYLQSKIYRAKEQLDE 112          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: A0A8K1CVL5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVL5_PYTOL)

HSP 1 Score: 102 bits (255), Expect = 2.670e-25
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQ-KGEVKPDLIKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALD 318
            M+ P  R++AQ  V  AGIVSRAFV AY QAVHNA+TG   +  +KA+ R + +   +A++ILN    G    + ++K++ +YFE NDP KGGSFYLQSK+FRAKEAL+
Sbjct:    1 MSGPLGRIIAQFVVMGAGIVSRAFVQAYQQAVHNAKTGNTAAMTSKAVKRKNVMERSQALEILNFPTSGTPSQEEVQKQFQRYFEANDPAKGGSFYLQSKIFRAKEALE 109          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: M4C0R0_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R0_HYAAE)

HSP 1 Score: 102 bits (254), Expect = 5.590e-25
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEVKPDL--IKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALD 318
            M+ P  R++AQ+ V  AGIVS+AFV AY QAVHNAR+G   +  AK ++   K+S  +A++ILN     V P    I+K++ +YFE NDP KGGSFYLQSK++RAKEAL+
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGTVAAKTVAGKKKMSKQQALEILNFPTSGVVPSTEDIQKQFTRYFEANDPAKGGSFYLQSKIYRAKEALE 110          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: A0A0P1AYF2_PLAHL (Mitochondrial import inner membrane translocase subunit tim16 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYF2_PLAHL)

HSP 1 Score: 99.4 bits (246), Expect = 5.900e-24
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEVKPDL--IKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALDEQ 324
            M+ P  R++AQ+ V  AGIVS+AFV AY QAV NAR+G   +   KA+ R +++ST +A +ILN       P L  +++++ +YFE NDP KGGSFY+QSK++RAKEAL+ Q
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVHAYQQAVQNARSGNAAAMKTKAVVRKNQMSTQQAREILNFPVSGPAPSLEDVQRQFKRYFEANDPAKGGSFYIQSKIYRAKEALERQ 112          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: A0A2D4C867_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C867_PYTIN)

HSP 1 Score: 99.4 bits (246), Expect = 5.900e-24
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGT---LESAKAMSRTSKLSTLEAMQILNLQKGEVKP-DLIKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALD 318
            M+ P  RV+AQ+ V  AGIVSRAFV AY QAVHNA+TG    + +  A+ R + +   +A++ILN         + ++K++ +YFE NDP KGGSFYLQSK+FRAKEAL+
Sbjct:    1 MSGPLGRVIAQVIVMGAGIVSRAFVQAYQQAVHNAKTGNTAAMTAKTAIKRKNVMPRTQALEILNFPTSATPTTEXVQKQFQRYFEANDPAKGGSFYLQSKIFRAKEALE 110          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: D0NVB8_PHYIT (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=D0NVB8_PHYIT)

HSP 1 Score: 99.0 bits (245), Expect = 9.870e-24
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEVKP--DLIKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALD 318
            M+ P  R++AQ+ V  AGIVS+AFV AY QAVHNAR+G   +  AK + R +++   +A +ILN       P  + I+K++ +YFE NDP KGGSFYLQSK+FRAKEAL+
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRKNQMPKQQAREILNFPTSGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALE 110          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: A0A5D6XKL2_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKL2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.880e-23
Identity = 60/115 (52.17%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSK----LSTLEAMQILNLQKG-EVKPDLIKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALDEQLA 330
            M+ P ARV+AQ+ V +AG+VSRAFV+AY QAVHNA++G   +A A    ++    +S  +A++ILN       KPD + K++ +YFE NDP KGGSFYLQSK+FRAKEAL+ + A
Sbjct:  361 MSGPIARVIAQVVVMTAGVVSRAFVTAYQQAVHNAKSGNTAAAMAAKPAARAKNVMSREQALEILNFPTAAHPKPDEVAKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEREQA 475          
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Match: W7TWQ8_9STRA (Mitochondrial import inner membrane translocase subunit tim16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWQ8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.350e-23
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRT-SKLSTLEAMQILNLQKGEVKPDL-IKKRYDQYFEINDPDKGGSFYLQSKVFRAKEALD 318
            M+ PF R+L  +AV SA + SRAFV+AY QA+ NA+ G   +AKA SRT   ++  EA+++LNLQK ++K    I +++D+YF  N+P KGGSFYLQSKV+RAKE L+
Sbjct:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLE 108          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1167.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSN0_ECTSI9.990e-6991.54Mitochondrial import inner membrane translocase su... [more]
A0A835YVS4_9STRA3.480e-3964.41Mitochondrial import inner membrane translocase su... [more]
A0A7S3V4X6_9STRA1.200e-2554.63Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8K1CVL5_PYTOL2.670e-2552.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4C0R0_HYAAE5.590e-2552.73Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
A0A0P1AYF2_PLAHL5.900e-2450.00Mitochondrial import inner membrane translocase su... [more]
A0A2D4C867_PYTIN5.900e-2450.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D0NVB8_PHYIT9.870e-2451.82Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A5D6XKL2_9STRA1.880e-2352.17EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
W7TWQ8_9STRA7.350e-2352.78Mitochondrial import inner membrane translocase su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1167contigL-elsbetiae_contig1167:24571..27384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue8.3e-55
Seed eggNOG ortholog2880.D7FSN0
Preferred namePAM16
KEGG koko:K17805,ko:K18619
Hectar predicted targeting categorysignal peptide
GOsGO:0001405,GO:0001503,GO:0001700,GO:0002164,GO:0002165,GO:0002168,GO:0002237,GO:0002831,GO:0002832,GO:0003674,GO:0003779,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0005794,GO:0005802,GO:0006139,GO:0006259,GO:0006605,GO:0006626,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006892,GO:0006895,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008154,GO:0008320,GO:0008565,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0010817,GO:0010821,GO:0010823,GO:0010941,GO:0012505,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016482,GO:0017038,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019866,GO:0019898,GO:0019904,GO:0022607,GO:0022804,GO:0022857,GO:0022884,GO:0023051,GO:0023057,GO:0030029,GO:0030036,GO:0030041,GO:0030150,GO:0031090,GO:0031224,GO:0031312,GO:0031314,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031347,GO:0031348,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032780,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042886,GO:0042887,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044431,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045934,GO:0046483,GO:0046907,GO:0048193,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051258,GO:0051336,GO:0051346,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0060255,GO:0060548,GO:0065002,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071897,GO:0072594,GO:0072655,GO:0080090,GO:0080134,GO:0090199,GO:0090201,GO:0090304,GO:0097435,GO:0098791,GO:0098796,GO:0098798,GO:0098800,GO:1900117,GO:1900118,GO:1900424,GO:1900425,GO:1901360,GO:1901362,GO:1901576,GO:1902007,GO:1902009,GO:1902288,GO:1902289,GO:1902510,GO:1902511,GO:1903624,GO:1903625,GO:1904680,GO:1990542,GO:2000012,GO:2000377,GO:2000378,GO:2001233,GO:2001234
EggNOG free text desc.protein import into mitochondrial matrix
EggNOG OGsKOG3442@1,KOG3442@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04812
Ec32 ortholog descriptionMitochondrial import inner membrane translocase subunit TIM16 homolog
Ec32 orthologEc-07_002470.1
Exons4
Model size477
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1167.1447.1prot_L-elsbetiae_contig1167.1447.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1167 24571..27384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.3507478-CDS-L-elsbetiae_contig1167:24570..246701622815369.3507478-CDS-L-elsbetiae_contig1167:24570..24670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 24571..24670 +
1691682865.322825-CDS-L-elsbetiae_contig1167:24570..246701691682865.322825-CDS-L-elsbetiae_contig1167:24570..24670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 24571..24670 +
1622815369.3618023-CDS-L-elsbetiae_contig1167:25498..256231622815369.3618023-CDS-L-elsbetiae_contig1167:25498..25623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 25499..25623 +
1691682865.339513-CDS-L-elsbetiae_contig1167:25498..256231691682865.339513-CDS-L-elsbetiae_contig1167:25498..25623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 25499..25623 +
1622815369.3732157-CDS-L-elsbetiae_contig1167:26626..266471622815369.3732157-CDS-L-elsbetiae_contig1167:26626..26647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 26627..26647 +
1691682865.3485453-CDS-L-elsbetiae_contig1167:26626..266471691682865.3485453-CDS-L-elsbetiae_contig1167:26626..26647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 26627..26647 +
1622815369.3847303-CDS-L-elsbetiae_contig1167:27153..273841622815369.3847303-CDS-L-elsbetiae_contig1167:27153..27384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 27154..27384 +
1691682865.3621974-CDS-L-elsbetiae_contig1167:27153..273841691682865.3621974-CDS-L-elsbetiae_contig1167:27153..27384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 27154..27384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1167.1447.1

>prot_L-elsbetiae_contig1167.1447.1 ID=prot_L-elsbetiae_contig1167.1447.1|Name=mRNA_L-elsbetiae_contig1167.1447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MASPFARVLAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTS
KLSTLEAMQILNLQKGEVKPDLIKKRYDQYFEINDPDKGGSFYLQSKVFR
AKEALDEQLALQAKQAEEEAALRAKGKAAGGGEGKAGGGARGAGAGAGAR
RTSTGRRR*
back to top

mRNA from alignment at L-elsbetiae_contig1167:24571..27384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1167.1447.1 ID=mRNA_L-elsbetiae_contig1167.1447.1|Name=mRNA_L-elsbetiae_contig1167.1447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2814bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:24571..27384+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAGCCCGTTCGCACGGGTGCTCGCCCAGCTGGCGGTGGCGAGCGC CGGGATCGTCTCGAGAGCCTTTGTGTCCGCCTACTCCCAGGCCGTCCACA GTGAGTCTTTCGGGGGGGGGGGGGGGGGCGCCCGGGGGGGGTTTGAGGTC GGGCAAGCATGCAACCACCCGGCTCGGTGGGGGTAAGGAACAAGNNNNNN NNNNGGGGGGCGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGACACGGGGGC GTTCTGAGTCGTGCAAGCATGCAACGACACCGACTTGTGTGCTGTACAGA TAACTAGATGCGAATATTAATGGTGATGTTTTTTTTTTTTAATTTAGAAA GCCAAAACTCGCTGCTGCGGGTCCGCGGGTCCGCAGGTCTACAGCACTCA AAGAGCTGACCGTCTTTATTCCTGTCGTCGTACGCGTGCGTACTGTACGG TTACTTTTCTTCGTGGTTCGGTTGCGTGTTTTGCTTTAACAAAATTGGGC GGGCGAGTCCTTTTTTGGCCTGTTTCTTGCGGAACGGATCGTAACACCAG TCGGCCGCAAGCGTGGCTTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTC TGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAGTATGTATGT TAACAAAAACTCGCAGTATTCGCGTCCGTCCCGTACTGGGCCGTATTACA TACTATGTGCACTCAACATTACAGCTCGCCTTCCACGTGCGCCGATGTAC TACTTCCCCTCTCCCACCTCACTGCTGTACACTACCGTATGTACACCCCC CCCTTTTTCTTGTCTCGCGTTTTCTTATTTTGGAATCTCCCGTTTCTGTT TCCGTCCGCCACCGCCGCACGGCCGCAGACGCGCGAACCGGCACCCTTGA GAGCGCCAAGGCCATGTCCCGAACGAGCAAGCTGTCCACCCTCGAGGCCA TGCAGATCCTCAACCTCCAGAAGGGGGAGGTAAAGCCAGACCTCATCAAG AAGGTACATGGTAAATAATACTTCGACTTCATTGTTGACGAGGGTGGGGA GTGCTGAACCCTGCTCCTCGCGATAAAAACATCGCATGGCAGGCGCCGCA GGACGGGGTCCCCCCTCCTGTGTGGTGACCCCGGTTGGGTCGTCTAGCTA GTCGTAGTGGAGGACGGGGGGGGCAGTGGGGCAGAAGAAAAATAAGCCAG TAATGGGTGGGAAAAAAAAACAAAACAAAGTGCGCGGAAGCATCTATGTA TAGCCTCTGCGCGGTGCAGGACGTTGACCTGTAGGTCTCCTTCCTCCCCT CCTTTTGATATTGGCTCGCGCAAGCGCTCGGCAGAAACGGTGGATGCCTT GCGTAGGCTAAATAGCAAAACAGACCTCTCGTTTAAGTTTCGTTTGAGTA TACCCTCCCACGTTGGAAGAAGTTTGGTGCTGCGGGGTCCTTCACGTGTG CGTCAGTCACCCCACACAAGCAGAGGAAAGGGAGCACTCGCCCAGCCTAT TGTGTTGCTGTGGACCACCCTCCTCACCCCCACGTCGATGTCCAAGAATG CGGGGTGTTCGTTCGGGTGGCTTCTCATCCCCCCCGGTCCTGATGATTTT TGTTTCCAATAGCGCTACTGCTGTGTTGTAGGGCGGACAAGGGTGTGTGT GGTTCGAACCGCGGCGTAATTACAGGAATACCAGATAAATTTACCCCCAC AAAGAGGCAATATATATATAGATGTGTACCCCGCATGGTGCACACGCACA TCGAGGTGCGTGTCTAGGAGGCATGGACTGCGTTTCCCGCCTTGAACACT ACGAAACACGCCTTCGACCACGCCTCTCCTGTCCTTCATCGCCCTATCTT TGTCTACTACTGCTGCTGTTTCCTCCTCTGCCGGTGGTGATGCCACCGCC GCCGCGATGTATGTCGCGGTTGCTGGCTTGGCTGCGTTGCTGCGGGTCCG GCTGGCTGTGCCCTGTGCTGCCGCATCGATTGGATGCTCGTGCTCGATCT GACCAGAGATACGACCAGTACTTCGAGGTGAGCGCGCTCGTCATCACGAG TAACTGCTGTGTTTCTCTCGGTTGTTAAATTAATGAACCCCTTGGAGGAA TGTCAGCTGTTTTTCGCTGCTGCTATTGCTGCTGCTGCCGGCGTCCCTGC ATTTTTATGGGCGGGTTTGGTGATGTGTTCCACTAACTACTGTGTTTTTA TAAATTTGACGATAAATACTGTTGTAAGCCTGCTGTGCACATTCTGCTGC ACTCCGGCCCTTTCCCCTTCTCACCTACCGCCTTTCCTCTATTTGGTATT TGGACAAGATGCCTCGTGTCTTGTCAGTCAAGGATCAACCAATCACGACA CTGGTTCTTCATCGTCTCGTTCCTAATTATTTCCGATGCGTTTTTTATGA TGATAAAGAGTTCGATCTTCCTATGTACATGTTGGTGTATACACTACACA ACAACACTACTGTTTTGAAAAGCTACATGCCCAAACATTGTCCCAACCTC CCCCGCGCGCGGTGATGCACCGCCGTTGCGCAGATCAACGACCCGGACAA AGGAGGGTCCTTCTACCTCCAGTCCAAGGTTTTCCGGGCGAAGGAAGCCC TCGACGAGCAGCTGGCGCTGCAGGCGAAGCAGGCCGAGGAGGAAGCGGCG TTGCGGGCGAAGGGCAAGGCTGCGGGCGGCGGAGAGGGCAAAGCCGGCGG CGGGGCGCGGGGAGCGGGGGCGGGGGCGGGCGCACGGCGAACCAGCACCG GCCGAAGGAGATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1167:24571..27384+

>mRNA_L-elsbetiae_contig1167.1447.1 ID=mRNA_L-elsbetiae_contig1167.1447.1|Name=mRNA_L-elsbetiae_contig1167.1447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:24571..27384+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAGCCCGTTCGCACGGGTGCTCGCCCAGCTGGCGGTGGCGAGCGC
CGGGATCGTCTCGAGAGCCTTTGTGTCCGCCTACTCCCAGGCCGTCCACA
ATGGCTAGCCCGTTCGCACGGGTGCTCGCCCAGCTGGCGGTGGCGAGCGC
CGGGATCGTCTCGAGAGCCTTTGTGTCCGCCTACTCCCAGGCCGTCCACA
ACGCGCGAACCGGCACCCTTGAGAGCGCCAAGGCCATGTCCCGAACGAGC
AAGCTGTCCACCCTCGAGGCCATGCAGATCCTCAACCTCCAGAAGGGGGA
GGTAAAGCCAGACCTCATCAAGAAGACGCGCGAACCGGCACCCTTGAGAG
CGCCAAGGCCATGTCCCGAACGAGCAAGCTGTCCACCCTCGAGGCCATGC
AGATCCTCAACCTCCAGAAGGGGGAGGTAAAGCCAGACCTCATCAAGAAG
AGATACGACCAGTACTTCGAGAGATACGACCAGTACTTCGAGATCAACGA
CCCGGACAAAGGAGGGTCCTTCTACCTCCAGTCCAAGGTTTTCCGGGCGA
AGGAAGCCCTCGACGAGCAGCTGGCGCTGCAGGCGAAGCAGGCCGAGGAG
GAAGCGGCGTTGCGGGCGAAGGGCAAGGCTGCGGGCGGCGGAGAGGGCAA
AGCCGGCGGCGGGGCGCGGGGAGCGGGGGCGGGGGCGGGCGCACGGCGAA
CCAGCACCGGCCGAAGGAGATGAATCAACGACCCGGACAAAGGAGGGTCC
TTCTACCTCCAGTCCAAGGTTTTCCGGGCGAAGGAAGCCCTCGACGAGCA
GCTGGCGCTGCAGGCGAAGCAGGCCGAGGAGGAAGCGGCGTTGCGGGCGA
AGGGCAAGGCTGCGGGCGGCGGAGAGGGCAAAGCCGGCGGCGGGGCGCGG
GGAGCGGGGGCGGGGGCGGGCGCACGGCGAACCAGCACCGGCCGAAGGAG
ATGA
back to top