mRNA_L-elsbetiae_contig1160.1388.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1160.1388.1
Unique NamemRNA_L-elsbetiae_contig1160.1388.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1160.1388.1 vs. uniprot
Match: D7FLG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG3_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.130e-29
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 SKKARQALEEEEKVARGLRWELEDRQQMAAAESEEAAKKVLELESKCEGALSSGEERLREVLGSLHAVEKAFVQHKDRQRSEEQ 252
            SKK RQALE EEKV+RGLRWELEDRQQ+AAAE+EEAA++  ELE++ E A+ SGEERLREVLGSLHAVEKAFVQHKDRQR EEQ
Sbjct:  345 SKKFRQALEAEEKVSRGLRWELEDRQQIAAAENEEAARRAGELENEYEAAVCSGEERLREVLGSLHAVEKAFVQHKDRQRLEEQ 428
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1160.1388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLG3_ECTSI1.130e-2980.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1160contigL-elsbetiae_contig1160:2928..5611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1160.1388.1prot_L-elsbetiae_contig1160.1388.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1160 2929..5611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.388525-CDS-L-elsbetiae_contig1160:2928..30521622815364.388525-CDS-L-elsbetiae_contig1160:2928..3052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1160 2929..3052 -
1691682862.3218627-CDS-L-elsbetiae_contig1160:2928..30521691682862.3218627-CDS-L-elsbetiae_contig1160:2928..3052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1160 2929..3052 -
1622815364.3994105-CDS-L-elsbetiae_contig1160:4017..41541622815364.3994105-CDS-L-elsbetiae_contig1160:4017..4154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1160 4018..4154 -
1691682862.3319561-CDS-L-elsbetiae_contig1160:4017..41541691682862.3319561-CDS-L-elsbetiae_contig1160:4017..4154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1160 4018..4154 -
1622815364.417279-CDS-L-elsbetiae_contig1160:5515..56111622815364.417279-CDS-L-elsbetiae_contig1160:5515..5611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1160 5516..5611 -
1691682862.3483362-CDS-L-elsbetiae_contig1160:5515..56111691682862.3483362-CDS-L-elsbetiae_contig1160:5515..5611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1160 5516..5611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1160.1388.1

>prot_L-elsbetiae_contig1160.1388.1 ID=prot_L-elsbetiae_contig1160.1388.1|Name=mRNA_L-elsbetiae_contig1160.1388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
SKKARQALEEEEKVARGLRWELEDRQQMAAAESEEAAKKVLELESKCEGA
LSSGEERLREVLGSLHAVEKAFVQHKDRQRSEEQVFLRKEEELRSALEAC
RARTADLERAVSEGAQREE
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mRNA from alignment at L-elsbetiae_contig1160:2928..5611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1160.1388.1 ID=mRNA_L-elsbetiae_contig1160.1388.1|Name=mRNA_L-elsbetiae_contig1160.1388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2684bp|location=Sequence derived from alignment at L-elsbetiae_contig1160:2928..5611- (Laminarionema elsbetiae ELsaHSoW15)
TCCAAGAAGGCGCGGCAGGCCTTGGAGGAGGAGGAGAAGGTCGCCCGGGG
GCTGCGGTGGGAGCTCGAGGATCGGCAGCAGATGGCCGCGGCCGAGGTTA
GTACTTAGGTTCTGCGGTGTAAGTCGTATATGAGCTGTGATTTTCGACTT
ACATAATACACGGCGATTTTAGCTGAAATTGACGGCGGTTTTCGTCACGG
ATTTTGTTGTTCCGGTGTGGCGTCGGTTAAGTTCTCCCACTGGACGTCAG
CGACCCTTATAGAGATGCGTGTAGTATACGTCCAGCCTGTCAAAACAAAC
ACGTTAGGTGACAATACTTCGTATGACGGCATCACGGAGGGGTTTTCCCC
GGAATACCTGGGGTTTGACCTGGCAGAGATGCAGGGGAGATGGTGAATTC
CTCTTCTTTTTTAATCAATGTATACAAATGTCAGCAGTCTACGTCCGGTC
TGTGAAAATATCGTTAGGTGTTTTTCTACTCGGCCGGCCCAATATTACGT
CACTACTATATGGAATACCGATTGAATCTCACGGAGTCCCGTCTCAAATG
TGGGTTAGGTTCCATTTTTGATTAACTAGTTGTTTTTCTTTCAAAACAAG
CCTTTTCAGGGGGGCTGGCTGCTTTTTTGTAGACGCACTAAAATATTAAC
AATATTTATGTTGTTCCGATTTTTTGCAGGAACTCACGGGTGGCGATGCA
TATATACGCGTGTAAAACCTTTTGTGCAGTAGAAGAGATAAGGCAGAGGG
GGGCCTGCAGGAGGAGGGGAGATGGAGGGGAGGGGGGGGGCATGTATCTG
GGATTTTGCTCAATGTAGGGAAGGCAGCAGCCAACAACAAGCATAAAACA
ACAGCGAGCTACTCTCTGTACCTACTAAACAGATTAACTCTTGTGACACG
ATGACCTGTTGCTGCTGTTTCCCATGTTCTTGCTTCACAACTGCTTCAAA
ACTGCTGTTGTTGTTTATTGCTATTGTTGTTATTGTTATTGATACATAGG
CTTCCTGCAACAGAGCCAGCCCCCAATTCTCAAAAAGAGCTGTGGGGGCT
CAGCGCGCGCGCGGGGGGGGTGTTTATCTAGGATACAGAGTGAAAAATCC
CCCACAGCTCTCTTTGAGAATTGGGGGCTGGCTCTATCGCAGGAAGCCTA
ATGATGATACCCCGAAGAAAATAATGACGCTGGTGGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTGA
TGTCGTTGTTTTTTTCAGTGTATTTTTGGTTGTGTCTTTCGTTGCTGCGT
TCGTTGTGTTTTCATTGTATATTTCATTGTTTTTTTCGTTGCTGCGTTCG
TTGTTTTTTTCATTGTATATTTCATTGTTTTTTTTCATTGTTTTTTTCGT
TGTTTTTTTCATTGTTTTTTTCATTGTTTTTTTCGGTGTTGTTTTCCTTC
TCTCCAGAGCGAGGAAGCAGCGAAGAAGGTCTTGGAACTGGAGAGCAAGT
GCGAGGGGGCCTTGTCGAGCGGCGAGGAGAGGCTCAGAGAGGTGCTGGGG
TCCCTCCACGCCGTCGAGAAAGCCTTCGTGCAGCACAAAGACAGGTACTG
GTATGAAACAACAGGTAAACATACACTCCAGCAGCAGTCTGTCGCGGCCG
GAGCGGCTCCGTGGTTTGCTCCGTTGCGGATGGGTGACGGGGGGGGCTGT
TCATGCAGCGTTTTGTATCGCTGAAAGATGTACGTGCAGCACGAAGAAAA
GCGGGGGTATTGTGTCAAGGCAGGGTTAGTTAGGGCTTTAAGAGGTAGGG
GCGGGCTTGGGATTAGCGTCGCGAAAGCTTGGTTGGGGTGGGGGGGTGAG
GCGTTGAGTTGAGTTACGGTTGACGTCGAAAAGGCCGCCGTTTAGATTCG
GGCCAGTTTTCGAACCAAGCGTATCTTCATGTTTGTCTCGGAAGCATATG
TATGTGTACTTGTACGAAGTATGTACATATGTATGTTTTACTGGCATTCG
TCATGTTAAATTGTGGCTGTTTGACTCGCAAAGAGCTCCCGATTTTTGGT
GGTGCCTCCAGCAGGGTAGTCTACGCAGGTTTTCAGTCAGCAAAACATAT
GGAATAAAGTATGGAATCGGAGGAATGGGGGGGGGGTCGTGGTTAGGGTT
AGATTTACGGAACCCCCTAACTCTATTTGACATATAAACCTGAATTTGAC
GATTTTGCGCGCGTATTTAGGCGGTCCCTCCAGCAGGGGGGGGGGGGGGG
GGCGAAAAAGGAAACACTTTTCAAATGGACAAAGGCGAGATGGAGACANN
NNNNNNNNGATCCTTTTCTTTTTTTTTTGGATTTTGCTCTGTGTTTTGGC
GTTTTTGGTCGTTTGTGGCGGCGGGCCGGGGGGGGGGGGGGGGGGGGGGG
CAAGAAAGTTGATCAATTGTCAACTGACCAAGGGCTAGCTAGCTATGTAC
CAGGTAAACATTTGAGTGATACATTACCTCCGAGTACCTCGATTAAGGTC
CTATGATTCATTGAGCCCCCCCCCCCCCCCCCCCCCCTCCTACCTCCAAT
ATCCTCCAGGCAAAGGTCGGAGGAGCAAGTGTTCTTGCGAAAGGAGGAGG
AGCTGAGGTCGGCGCTGGAGGCGTGTCGCGCAAGAACAGCAGACCTCGAG
CGGGCGGTGTCGGAGGGGGCACAGCGGGAGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1160:2928..5611-

>mRNA_L-elsbetiae_contig1160.1388.1 ID=mRNA_L-elsbetiae_contig1160.1388.1|Name=mRNA_L-elsbetiae_contig1160.1388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig1160:2928..5611- (Laminarionema elsbetiae ELsaHSoW15)
TCCAAGAAGGCGCGGCAGGCCTTGGAGGAGGAGGAGAAGGTCGCCCGGGG
GCTGCGGTGGGAGCTCGAGGATCGGCAGCAGATGGCCGCGGCCGAGTCCA
AGAAGGCGCGGCAGGCCTTGGAGGAGGAGGAGAAGGTCGCCCGGGGGCTG
CGGTGGGAGCTCGAGGATCGGCAGCAGATGGCCGCGGCCGAGAGCGAGGA
AGCAGCGAAGAAGGTCTTGGAACTGGAGAGCAAGTGCGAGGGGGCCTTGT
CGAGCGGCGAGGAGAGGCTCAGAGAGGTGCTGGGGTCCCTCCACGCCGTC
GAGAAAGCCTTCGTGCAGCACAAAGACAGAGCGAGGAAGCAGCGAAGAAG
GTCTTGGAACTGGAGAGCAAGTGCGAGGGGGCCTTGTCGAGCGGCGAGGA
GAGGCTCAGAGAGGTGCTGGGGTCCCTCCACGCCGTCGAGAAAGCCTTCG
TGCAGCACAAAGACAGGCAAAGGTCGGAGGAGCAAGTGTTCTTGCGAAAG
GAGGAGGAGCTGAGGTCGGCGCTGGAGGCGTGTCGCGCAAGAACAGCAGA
CCTCGAGCGGGCGGTGTCGGAGGGGGCACAGCGGGAGGAGGCAAAGGTCG
GAGGAGCAAGTGTTCTTGCGAAAGGAGGAGGAGCTGAGGTCGGCGCTGGA
GGCGTGTCGCGCAAGAACAGCAGACCTCGAGCGGGCGGTGTCGGAGGGGG
CACAGCGGGAGGAG
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