mRNA_L-elsbetiae_contig1157.1362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1157.1362.1
Unique NamemRNA_L-elsbetiae_contig1157.1362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1157.1362.1 vs. uniprot
Match: D8LQN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN1_ECTSI)

HSP 1 Score: 649 bits (1673), Expect = 1.110e-205
Identity = 462/857 (53.91%), Postives = 540/857 (63.01%), Query Frame = 1 
Query:    1 TQANMETAFSSDLKEVEIRLARGHRELETSLESEIRRNGTKLEDMDDRYARSEEALRRXXXXXXXXXXXXXXXXXXXXXXERQLRVDEERLDSLENLKKAHQRRLSELRVKLEGSTPV----VPIDIEPDETDDERMARFLKAAGAATEFLAADLEKILENKNTSGGLSSGPTATAPDPSADNAVESVQSQKNQATASNTEEEEANLFEKLRNISVEAAEFSRL-SSMKIAEGRMEE---GDDGSGSSRNAITADADADA-VERAEALCGRIENLLSAXXXXXXXXXXXXXXXXXXXXXXXXTSVAAGGSKNCSHIGDIVCPNGRRDLALRLATARDALVAVIGERTSVGSLKVALLGLQSSFRAGIEQRQGAGAMETQWNDLCGRVSGLDNSVSDIRGSLSGAGQHRXXXXXXXXXXXGGGVTEDDLEERLGFKADVTWVQRELQRLWDALDARAMANVA------------GAGGI-SRPRSAPSANSSNSHNKNDNPEMAGEEESDVTP-----NSRLISTSLPSSSVLPTGMGGGRL------QHSEHGQRSSFNEGSSIIKDLLRKTSRLEQQMASKADHDEVTRALSSIDNKLRKVGIVIPALQEELSNKIENKDLTKLVALVSNGGSISDWPPGGXXXXXXXXXXXXXXXNTGAVLASRLNSKFRCLSCDRPLPALGPPGPPKLGSSGLSIAGAGAPRSPQITKTQPGQQRLRLTAGHVGDDADAFSRPTSPAIKSPTSEDNGDYDVAGWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDQPLGTGRLEPLGANGEQITGVLSRYPRMMPPPSRVRTAAGGGIGSRPGSSSGGRI 2472
            T+  +E  F SD+ E+E RLA GHR        EIRRNGTKLEDMDDRYARSEEALRR       XXXXXXXXXXXXXXX     VDE+RL SLENLKKAHQRRLSELRV+LE  TP     VPI+ EP+ETD ERMAR LK AG ATEFLA DL+KIL++    GG +   TATA D +A+   E  Q    +++ASN +    +  ++LR++SV A E SRL + +  A G+ E    G DG G+      +D++ DA V R EALCG I++LLS                         +    GG      I DIVCPNGR+DL  RL  ARDAL+ VIGER+SVGSL+VA LGL +S RA +E++Q    ME +WNDL GRVSGLD SVSDI+ SL   G HR                 +DLEERLG KADV+WVQRELQRLWDAL+ARAMA V             G GG  SRPRSAP    +N   +N NPE AG+EE D+       NSR+IS SLPSS  L T +G          Q +  G+R+SFNEG+S+IKDL++KTSRLEQQMA+KAD++EV +AL+S+ NKLRKVGIVIPA+QEEL+NKIE KDL KLV++VSNGG   + PPGG               +  AV+ASRLNSKFRCLSCDRPLPALGPPGPPKLG+SGLS+AGAG PRSPQ T +Q   QRL+LTA      AD  SRP SPA  SP  ED GD  VAGWG                                           DQP   GRLEPLGANGE + GVLSRYPRMMPPPSR+RTAAGGGIGSRP SSSGGRI
Sbjct:  487 TKKMVEEKFKSDMTELETRLASGHRXXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIGEXXXXXXXXXXXXXXXXXXXXVDEDRLGSLENLKKAHQRRLSELRVQLESGTPAAGGAVPIETEPEETDAERMARLLKTAGTATEFLAEDLDKILDSN---GGNAGDATATAAD-NAEANHELGQVLSARSSASNVD----HALQELRHVSVNAVECSRLCNDVASASGQAERDEIGPDGGGAG-----SDSNVDAAVRRVEALCGHIQDLLSTQDKNISSSKNKAELSATGEIERQGSLEGNGGVG--LKIDDIVCPNGRKDLVQRLTAARDALLPVIGERSSVGSLRVAFLGLTASVRANLEEKQARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEGHHRYGSLDMDSDNG------EDLEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEGHGGDPSRPRSAPP---TNYDKENHNPETAGQEEGDLDASPSQANSRVISGSLPSS-ALSTALGXXXXXXXXXXQGAVGGRRASFNEGASLIKDLMKKTSRLEQQMATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHNNG-------DGSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSMAGAGTPRSPQKTSSQ---QRLKLTAAEEPG-ADKNSRPGSPATTSPAVEDVGD--VAGWGRGSSNMMIPGGASDMESAYGNGGKDAGARRRQKQQHRQHHEM-DQP--PGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSSGGRI 1302
[Close]
BLAST of mRNA_L-elsbetiae_contig1157.1362.1 vs. uniprot
Match: A0A6H5LPN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPN1_9PHAE)

HSP 1 Score: 530 bits (1366), Expect = 8.070e-161
Identity = 440/920 (47.83%), Postives = 521/920 (56.63%), Query Frame = 1 
Query:    1 TQANMETAFSSDLKEVEIRLARGHRELETSLESEIRRNGTKLEDMDDRYARSEEALRRXXXXXXXXXXXXXXXXXXXXXXERQLRVDEERLDSLENLKKAHQRRLSELRVKLEGSTPV----VPIDIEPDETDDERMARFLKAAGAATEFLAADLEKILENKNTSGGLSSGPTATAP-DPSADNAVESVQSQKNQATASNTEEEEANLFEKLRNISVEAAEFSRLSSMKIAEGRMEEGDD------GSGSSRNAITADADADAVERAEALCGRIENLLSAXXXXXXXXXXXXXXXXXXXXXXXXTSVAAGGSKNCSHIGDIVCPNGRRDLALRLATARDALVAVIGERTSVGSLKVALLGLQSSFRAGIEQRQGAGAMETQWNDLCGRVSGLDNSVSDIRGSLSGAGQHRXXXXXXXXXXXGGGVTEDDLEERLGFKADVTWVQRELQRLWDALDARAMANVA------------GAGGI-SRPRSAPSANSSNSHNKNDNPEMAGEEESDVTP-----NSRLISTSLPSSSVLPTGMGGGRL-----QHSEHGQRSSFNEGSSIIKDLLRKTSRLEQQ--------------------------------------------------------------MASKADHDEVTRALSSIDNKLRKVGIVIPALQEELSNKIENKDLTKLVALVSNGGSISDWPPGGXXXXXXXXXXXXXXXNTGAVLASRLNSKFRCLSCDRPLPALGPPGPPKLGSSGLSIAGAGAPRSPQITKTQPGQQRLRLTAGHVGDDADAFSRPTSPAIKSPTSEDNGDYDVAGWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDQPLGTGRLEPLGANGEQITGVLSRYPRMMPPPSRVRTAAGGGIGSRPGSSSGGRI 2472
            T+  ME  F SD+ E+E R+                    KLEDMDDRYARSEEALRR  XXXXXXXXXXXXXXXXXXXX                          ELRV+LE  TP     VPI+ EP+ET ++RMAR LK A  ATEFLA DL+KIL+N    GG +   TATA  +  A++ +  VQS    A +S++  + A   ++LR++S++A E SRL +         EGD+      G+GS  N   A      V RAEALCGRI++LLSA                        +    GG      + DIVC NGR+DL  RL  ARDAL+ VIGER+SVGSL+V LLGL +S RA +E++Q    ME +WNDL GRVS L+ SVSDI+ SL   G HR                 +DLEERLG KADV+WVQRELQRLWDAL+AR MA V             G GG  SRPRS PS   ++   +N NPE AG+ E D+       NSR+IS SLPSS  L T +G         Q +  G+R+S NEG+S+IKDL++KTSRLEQQ                                                              MA+KAD++EV +ALSS+ NKLRKVGIVIPA+QEEL+NKIE KDL KLV++VSNGG   + PPGG               ++ AV+ASRLNSKFRCLSCDRPLPALGPPGPPKLG+SGLSIAGAG PRSPQ  K+Q   QRL+LTA      A+  +RP SPA  SP  ED GD  VAGWG XXXXXXX                      XXXXX      G DQP   GRLEPLGANGE + GVLSRYPRMMPPPSR+RTAAGGGIGSRP SSSGGRI
Sbjct:  471 TKKLMEEKFKSDMTELETRIXXXXXXXXXXXXXXXXXXXXKLEDMDDRYARSEEALRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRVQLESGTPAAGGAVPIETEPEETGEDRMARLLKTASTATEFLAEDLDKILDNN---GGNAGDATATAAGNAEANHELGQVQS----ARSSDSNIDHA--LQELRHVSIDAVECSRLCNDVANASGQAEGDEIGPDGGGAGSDHNVDAA------VCRAEALCGRIQDLLSAHEKNISSNKKKAELSATFEIERQGSLEGNGGMG--LKLDDIVCSNGRKDLVQRLTAARDALLPVIGERSSVGSLRVTLLGLTASVRANLEEKQARKLMEERWNDLRGRVSELNTSVSDIKDSLLDEGHHRYGSLDMDSDNG------EDLEERLGCKADVSWVQRELQRLWDALNARTMAAVGALSPRTGAGVREGQGGDPSRPRSTPS---TDYDKENHNPETAGQAEGDLEASPSQANSRVISGSLPSS-ALSTALGXXXXXXXXXQGAVGGRRASVNEGASLIKDLMKKTSRLEQQRLHERVLVMFHFSAMTVCCMFTPPLSLLPSWLGDATSRFDFFDFVLHPRPRYHAVWNPTVRKMATKADNEEVMKALSSVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHNNG-------DSSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSIAGAGTPRSPQKPKSQ---QRLKLTAAEEPG-AEKNARPGSPATTSPAVEDVGD--VAGWGGXXXXXXXPGGASDMESTYGNGGKDAGARRXXXXXHRQQH-GMDQP--PGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRP-SSSGGRI 1346
[Close]
BLAST of mRNA_L-elsbetiae_contig1157.1362.1 vs. uniprot
Match: A0A6H5K7N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.940e-13
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = -2 
Query: 3230 GVNPASAQFHRCEDCNKKQTREMLLVNATCGASSLCNIQ 3346
            G NPASAQ+HRCE+CNK+QTR+MLLVNATCGASSLC+IQ
Sbjct:   45 GENPASAQWHRCENCNKRQTRDMLLVNATCGASSLCSIQ 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1157.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQN1_ECTSI1.110e-20553.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LPN1_9PHAE8.070e-16147.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7N9_9PHAE7.940e-1384.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1157contigL-elsbetiae_contig1157:417..6482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_006310.1
Exons6
Model size4334
Cds size2463
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1157.1362.1prot_L-elsbetiae_contig1157.1362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1157 429..4623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.2763972-UTR-L-elsbetiae_contig1157:416..4281622815361.2763972-UTR-L-elsbetiae_contig1157:416..428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1157 417..428 +
1691682860.6425662-UTR-L-elsbetiae_contig1157:416..4281691682860.6425662-UTR-L-elsbetiae_contig1157:416..428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1157 417..428 +
1622815361.3532014-UTR-L-elsbetiae_contig1157:4623..64821622815361.3532014-UTR-L-elsbetiae_contig1157:4623..6482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1157 4624..6482 +
1691682860.730074-UTR-L-elsbetiae_contig1157:4623..64821691682860.730074-UTR-L-elsbetiae_contig1157:4623..6482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1157 4624..6482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.2864583-CDS-L-elsbetiae_contig1157:428..6231622815361.2864583-CDS-L-elsbetiae_contig1157:428..623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 429..623 +
1691682860.6512742-CDS-L-elsbetiae_contig1157:428..6231691682860.6512742-CDS-L-elsbetiae_contig1157:428..623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 429..623 +
1622815361.2979746-CDS-L-elsbetiae_contig1157:1009..10991622815361.2979746-CDS-L-elsbetiae_contig1157:1009..1099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 1010..1099 +
1691682860.6593244-CDS-L-elsbetiae_contig1157:1009..10991691682860.6593244-CDS-L-elsbetiae_contig1157:1009..1099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 1010..1099 +
1622815361.309502-CDS-L-elsbetiae_contig1157:1569..21721622815361.309502-CDS-L-elsbetiae_contig1157:1569..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 1570..2172 +
1691682860.6696458-CDS-L-elsbetiae_contig1157:1569..21721691682860.6696458-CDS-L-elsbetiae_contig1157:1569..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 1570..2172 +
1622815361.3216503-CDS-L-elsbetiae_contig1157:2274..30091622815361.3216503-CDS-L-elsbetiae_contig1157:2274..3009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 2275..3009 +
1691682860.686354-CDS-L-elsbetiae_contig1157:2274..30091691682860.686354-CDS-L-elsbetiae_contig1157:2274..3009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 2275..3009 +
1622815361.3319201-CDS-L-elsbetiae_contig1157:3494..36311622815361.3319201-CDS-L-elsbetiae_contig1157:3494..3631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 3495..3631 +
1691682860.711589-CDS-L-elsbetiae_contig1157:3494..36311691682860.711589-CDS-L-elsbetiae_contig1157:3494..3631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 3495..3631 +
1622815361.3415256-CDS-L-elsbetiae_contig1157:3920..46231622815361.3415256-CDS-L-elsbetiae_contig1157:3920..4623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 3921..4623 +
1691682860.721486-CDS-L-elsbetiae_contig1157:3920..46231691682860.721486-CDS-L-elsbetiae_contig1157:3920..4623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1157 3921..4623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1157.1362.1

>prot_L-elsbetiae_contig1157.1362.1 ID=prot_L-elsbetiae_contig1157.1362.1|Name=mRNA_L-elsbetiae_contig1157.1362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=821bp
METAFSSDLKEVEIRLARGHRELETSLESEIRRNGTKLEDMDDRYARSEE
ALRRAEERIGEVQEEVSAVTHSISEVERQLRVDEERLDSLENLKKAHQRR
LSELRVKLEGSTPVVPIDIEPDETDDERMARFLKAAGAATEFLAADLEKI
LENKNTSGGLSSGPTATAPDPSADNAVESVQSQKNQATASNTEEEEANLF
EKLRNISVEAAEFSRLSSMKIAEGRMEEGDDGSGSSRNAITADADADAVE
RAEALCGRIENLLSAAAAAAAENDNDDDSDSSNKLRRSSTSVAAGGSKNC
SHIGDIVCPNGRRDLALRLATARDALVAVIGERTSVGSLKVALLGLQSSF
RAGIEQRQGAGAMETQWNDLCGRVSGLDNSVSDIRGSLSGAGQHRHRSID
MDTDNDGGGVTEDDLEERLGFKADVTWVQRELQRLWDALDARAMANVAGA
GGISRPRSAPSANSSNSHNKNDNPEMAGEEESDVTPNSRLISTSLPSSSV
LPTGMGGGRLQHSEHGQRSSFNEGSSIIKDLLRKTSRLEQQMASKADHDE
VTRALSSIDNKLRKVGIVIPALQEELSNKIENKDLTKLVALVSNGGSISD
WPPGGRNSTTTTNSSSNNNDNTGAVLASRLNSKFRCLSCDRPLPALGPPG
PPKLGSSGLSIAGAGAPRSPQITKTQPGQQRLRLTAGHVGDDADAFSRPT
SPAIKSPTSEDNGDYDVAGWGGGGGGGGSGMALGGNAENNDYSSAYYSKD
KGGGGRRRQQQRGGDQPLGTGRLEPLGANGEQITGVLSRYPRMMPPPSRV
RTAAGGGIGSRPGSSSGGRI*
back to top

mRNA from alignment at L-elsbetiae_contig1157:417..6482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1157.1362.1 ID=mRNA_L-elsbetiae_contig1157.1362.1|Name=mRNA_L-elsbetiae_contig1157.1362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6066bp|location=Sequence derived from alignment at L-elsbetiae_contig1157:417..6482+ (Laminarionema elsbetiae ELsaHSoW15)
ACGCAGGCAAACATGGAAACAGCGTTCAGTTCCGATCTGAAAGAGGTCGA
GATAAGGCTGGCCAGGGGCCATCGCGAGCTTGAGACGAGCCTAGAGAGCG
AGATCCGACGCAACGGGACAAAGCTGGAAGATATGGACGACCGCTACGCT
AGGAGCGAGGAGGCTCTTCGGCGCGCCGAGGAGAGAATAGGAGAAGTGCA
GGAAGAGGTGAGCCTTATTTCTAGTGTACAGCTCTTCTAACGTTCTTGTT
TCGTAGTCGCCCACACCCAAACGTTAGAGTCGCTCCTCGCTTCGGAACCC
TTTCAGAGCTTTCCCCCTGTTGCACGGCCCTCTTTTCCTCCAAACTTGGC
TTTTTTCAACCCCGAAAAGGTTGAGGATCCGCGTGCTGTTTCGCGATATT
AAAGGCGACCTCCAATAGTGGGCGATGTAGGTTAGTGTCCTTTAGGCGAC
GTTTGCCCTTTCTTCCACTACTTCGTTTCGAGCTGTTCGAGCGCGAAATT
TCCCTCGATCCTCAATCGAAGTTACCAGGATTTATTTGTTCGAAATGAAC
ACTAAAACCCACATGCCTTATCTGGTGTTTTCGAACCGAAAAGGTTTCTG
CGGTAACTCACAGCATTTCAGAGGTGGAGCGCCAGCTGCGGGTGGACGAG
GAAAGATTGGACAGCCTAGAAAACCTCAAGAAGGTAAGCACAAGCAGTGG
GCTTACGAAGGCACGGCCTTTAAGCCAGCTTACAAGTGAGCACCCTCACA
CAGGTGATTGTGGCCATCACACTCGCCTCCTTGGAGAGACCAAACGCTTC
TTTTCCAGGTGCCGCGCTTTCTGTCACGAGCCACCAGGGTAGGTAGCACC
GTAGGAATGGCTCAACCGTAGGCGATGAAAGGGAAAGGGTGCGAGACATC
CTCCTCGCGAGACATCCTCCGCGCGACCTCCGTCTAGATCTGCAGAAAGC
ACCACCATACTGAAAGTATCTGTTAAACCTTAACCAATCTCCTTTCAGGG
GTATCGTTCCTTAGATACTACTGCTTTAGAGCGGTTCAGACGTTTCGCGG
CCGAAAATAAAAACACGTACGGTATTCAAGAGTCTAGCCCTCGCCGATGC
CTGCTTCACGCGAACCTCCCTCGCAAACCTTTACCTGATGCACCTGGCAA
CAGGCGCACCAGCGGAGGCTGAGCGAGCTCAGAGTGAAGCTGGAGGGCAG
CACACCGGTGGTTCCCATCGATATCGAACCCGACGAGACCGACGACGAGC
GGATGGCTCGCTTCCTCAAGGCGGCCGGCGCTGCCACCGAGTTCCTTGCC
GCCGACCTCGAGAAAATCCTCGAAAACAAAAACACCAGTGGTGGTTTATC
AAGCGGTCCAACCGCGACCGCGCCGGACCCCTCCGCAGACAACGCCGTCG
AAAGCGTCCAATCGCAAAAGAACCAGGCCACAGCCAGCAACACCGAGGAA
GAAGAAGCGAATCTTTTCGAAAAGCTCCGGAACATATCTGTGGAGGCTGC
AGAGTTCTCGCGCCTTAGCAGCATGAAAATTGCAGAGGGTCGGATGGAGG
AAGGTGACGACGGTAGCGGAAGCAGCCGGAACGCCATTACCGCTGATGCT
GATGCTGATGCAGTTGAGCGGGCGGAGGCTCTCTGCGGCCGAATCGAGAA
CCTACTCTCCGCCGCCGCCGCCGCCGCCGCCGAAAATGACAACGACGACG
ACAGCGATAGCAGCAACAAGTTACGCCGCTCATCTACATCAGTGGCAGCC
GGTGGGGTTGAGCGGCAGCACTCGCACGGGGATGACGTCGACCTTGGCGT
CGGCAACAGCGACAAAGACCCAGGATTCGATCGCTCAACCAGCAAGAGCA
GGAGAGAGAGCAAAAACTGCTCGCACATCGGCGACATAGTGTGCCCGAAC
GGCCGCAGAGACCTTGCCCTGAGGCTGGCCACCGCGCGCGACGCCCTCGT
AGCCGTGATCGGGGAGCGAACCAGCGTCGGCAGCCTGAAAGTAGCCCTGC
TAGGGTTACAGTCCAGTTTCCGAGCCGGTATCGAGCAGAGGCAGGGCGCC
GGCGCGATGGAAACCCAGTGGAACGACCTCTGCGGCAGGGTGTCCGGCCT
TGACAACTCCGTCTCCGACATAAGGGGTTCCCTCTCGGGTGCCGGCCAGC
ACCGTCACCGTAGCATAGACATGGACACGGACAACGATGGAGGAGGGGTA
ACGGAGGATGACCTCGAAGAACGGCTTGGGTTCAAGGCAGATGTGACCTG
GGTTCAGCGCGAGCTTCAGCGGCTGTGGGACGCTCTTGACGCTCGCGCGA
TGGCTAATGTGGCGGGAGCGGGGGGGATCTCCCGCCCGCGGTCTGCTCCG
TCGGCGAACAGCAGCAACAGTCACAACAAAAACGACAACCCCGAGATGGC
CGGGGAAGAGGAGAGCGACGTGACGCCGAACAGCCGGTTGATTAGCACGT
CGCTGCCGTCGTCATCGGTCTTGCCGACAGGAATGGGTGGAGGGAGGTTG
CAGCACTCGGAACACGGGCAGAGGTCAAGCTTCAACGAAGGATCGTCTAT
CATCAAGGATCTGCTGAGGAAAACCTCTCGCCTAGAACAACAGGTGAGGG
GTTGAAGCCCTTGGAGGAACTCCAACTCCAGCGGGAATATCCGGAGCATA
AAGTCTTCCGATAAACCAAATAAGAAGTGATGCGGAAAGGAGAAAGGGCT
GTCTTGCGTGACACTCTCAACGTTGGACGATACACTGCACGCGAACAAGT
CGCGACATGCCATATCTCTGTCTACTCTAGAGTATACCATCGTGAAGCAA
ATGAACTTCAAAAGCCTTCACAGCCTATCTCCCATCCATCTGCTGTTCAT
CATACTGTGTCAATCAATCAATTCAATCAACGCTTGCCCGGCGCATGTTC
TCGTTTTCTTTGTTTCGTCTCGTCCTGTCTCACTTTGTCTCATCGCCGCC
GCCGCCGCCGCCGCCGTGCCTTGTGGTCGCGGATTGGTGCATGTACGCTG
GTGCCTGGCACGGGATGCTATACGATGATGATGGTGGTGACGAACGTGCG
GTGGGTGAACGAACCGATGGACGGACAGATGGCGTCGAAGGCCGACCACG
ACGAAGTGACAAGAGCCTTGTCGTCTATCGACAACAAGCTGCGCAAGGTC
GGCATCGTTATCCCGGCTCTTCAGGAGGAGCTGTCCAACAAGATCGAGAA
CAAGGACCTCACAAAGTAAGTTTTACGTCTTTTTCGCCTTTATTTGTTTG
TTTCCTGAGTGTACCCGTTCAAAGAAACATGCTTGTGTTGACGGAAAAGT
TGCAAGAGAAACAACTAAGAGAAACAGCGTTGCCAAAGCATACTACGGCA
GACCAGCAGTAGTCCCAAGCCAACGCAAGCCAACTGCGAACGACACATTC
CTCTTTGACACGAGACATCAGACGCCAGACCTATCCTAAAAAGGCCCCGC
TCCCCCCCACCCGTCATGCTCACGCCACACCCACTCAACGCCGAACGAGA
GAAGGCTAGTTGCCCTGGTTTCGAACGGTGGCAGCATCAGTGACTGGCCT
CCAGGAGGCCGCAACTCCACCACCACCACCAACAGCAGCAGCAACAACAA
CGACAACACTGGCGCTGTCCTCGCCTCTCGACTCAACTCCAAGTTTCGCT
GCTTGTCATGCGATCGGCCCCTGCCCGCTCTGGGTCCCCCGGGTCCTCCA
AAACTCGGCTCTTCCGGCCTGTCCATTGCTGGAGCCGGCGCCCCACGGAG
CCCCCAGATAACAAAAACCCAGCCTGGGCAGCAGCGACTTCGGCTTACAG
CGGGACATGTGGGGGATGATGCTGATGCGTTCTCCAGGCCGACCAGCCCC
GCCATAAAGTCGCCTACATCGGAGGATAACGGTGACTATGATGTTGCTGG
GTGGGGCGGCGGCGGTGGCGGCGGCGGCTCCGGCATGGCATTGGGAGGAA
ACGCCGAGAATAACGACTACAGCAGCGCCTACTACAGCAAGGACAAAGGC
GGCGGTGGACGACGCCGACAGCAGCAGCGCGGAGGGGATCAGCCATTAGG
GACAGGGCGGTTGGAGCCCTTAGGCGCCAACGGGGAGCAGATCACCGGGG
TGTTGTCGAGGTATCCGAGAATGATGCCCCCGCCATCTAGAGTTCGGACC
GCTGCTGGAGGTGGCATTGGTTCCAGACCGGGATCTTCTTCCGGGGGCAG
AATATAGAATATAGTAGAATACATAATAGTTCACGTAATATGTACTTCGA
AGTATTAAACATCAAAGCATCAAGGACTGGTGCTGAGACAAAAATACCCA
CACCAAAATTCGCGGTTCTCCGACCAACGTGTACCGTAAAAAAATGAGGG
TTTAAGCTACATAGCACGATATAATCCACAGCAAACACACGGGTAAGCAC
TCCACCTTCACCTACGCCTACACCTACATCTGGGAGCATCTATGCTACAT
GCGTCTGCATGGCTTGGCCAGCTATGATAGCCCCCTTTCGGGTTTCTGCG
GCCGTGGCGGCGGTCCAAAGCCAAAGCCAAAGCCTAAGCCCAACTGACGG
CTTCTGTGGTGTGTTATTCGCCACGTAGTCTCACCGGTAAACCTTGTCCC
TAAAATGATTCATGATCTAACTACGGCAGGGCAGACAGACAAGACAGACA
GATAGAGTCCACACCAGCGCGTTTGCTTAACGCTGGTGCCGGTGGGATCT
ACGACATCTACGACAACCACTATTGAATGTTTCGACCTTCAACTGGTAGA
TACATACGACCTACATCTAACGTTCAGCTCGATCTTAACAAGAACACACA
AATCAGCCGATACTTACAAACATTTACCCCGCCCTCCTAGCATTGACTGC
GCCTATAGGCACAATTTAGGCATTGAGACGAAGTGATAAAACTACCGCAG
CAAACGCTCTAGTCTAAAGCAGTAAAGCAAAAGTCGCACAGCAGCAGGAT
TCTATCCCTTATTGGATGTTGCAGAGAGATGAAGCTCCACATGTGGCATT
GACGAGAAGCATTTCCCTTGTTTGCTTTTTATTGCAATCTTCACATCGGT
GAAACTGGGCAGAAGCCGGGTTCACGCCTGCGTTTGCGTGAGGTGCGGCA
AAACAAGTACTGGTAAGGGTTATCACATACGGCCTGGGGGGACACAATGA
ACAACGTCGAAAATCCAGACAGGGCGTGCAAACAACAGAAATGATAATAA
TATCCCGACCTGATCGAAGATTAGTCTACACTAGTCCACCTTAACGCTGC
AGTCACTCTACAGAAAATGGTGTCTCATCTATCTGGCGATCCAAGGCGAC
GCAATACGGTTTGGCGTCAGGAGTGGCGATGGAAACTACAGTACGCCTTG
ACCGTCAACTGCGATTCTGCGATGGAAAGCAGGAAATGACCCACCTTCCG
TGCGGGCGAATTGGCGGCCGCACTGAAAATACAGGGGTGTAGACAAGTAG
GTACACAGGCATGACCGGCACCACACACAAAAACACACAAAGAGGTGGAA
CATTGACGCACGACGTCGGCACGCCGAGACGGGGGGCAAAGCAAAGGGCG
GCGGTAGCAACGGGGTCGTCAATCGGTGATCGATAGCTAAAACGGCCCAC
ACGCGAATGCATATGTGTAGGGTGCATCCAAACGATATGTACGAAAAGAG
ATTTTCGCAAGTCCAAGGCGGTGTTGTAGTCTGCCTAGGCATCGTACATA
GACAAGCGCCGTGCGACTTACTCCGGAACCTTTACTTTGGCAGAGAGCCA
GTTGGAATGTACAAGTTCGCCAGACCCCGCCCTCGTTCGTTTCCTCGCTC
CTCCGATAGATCTCCGTCTACATACAATATGGAGCATGTCTACATACATA
GACTGCATGCAACTCTCCCACGTGTCCATCGTTCTTCATACATACATACA
TAGACACGGATAGACTGGACTACATAGACTATGTACACAGGCCCTTAGGT
GAGCCGTGTACTAGAGTGTAGATAAGACTCACTCTCTTGCAATGGGGGTC
CGTGTAAGACGGTGCGTAAGGTTGGTCGTAAGGCGGCGCGTCGCCATGGT
TGACGTTCTGGTGCGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1157:417..6482+

>mRNA_L-elsbetiae_contig1157.1362.1 ID=mRNA_L-elsbetiae_contig1157.1362.1|Name=mRNA_L-elsbetiae_contig1157.1362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4926bp|location=Sequence derived from alignment at L-elsbetiae_contig1157:417..6482+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAACAGCGTTCAGTTCCGATCTGAAAGAGGTCGAGATAAGGCTGGC
CAGGGGCCATCGCGAGCTTGAGACGAGCCTAGAGAGCGAGATCCGACGCA
ACGGGACAAAGCTGGAAGATATGGACGACCGCTACGCTAGGAGCGAGGAG
GCTCTTCGGCGCGCCGAGGAGAGAATAGGAGAAGTGCAGGAAGAGATGGA
AACAGCGTTCAGTTCCGATCTGAAAGAGGTCGAGATAAGGCTGGCCAGGG
GCCATCGCGAGCTTGAGACGAGCCTAGAGAGCGAGATCCGACGCAACGGG
ACAAAGCTGGAAGATATGGACGACCGCTACGCTAGGAGCGAGGAGGCTCT
TCGGCGCGCCGAGGAGAGAATAGGAGAAGTGCAGGAAGAGGTTTCTGCGG
TAACTCACAGCATTTCAGAGGTGGAGCGCCAGCTGCGGGTGGACGAGGAA
AGATTGGACAGCCTAGAAAACCTCAAGAAGGTTTCTGCGGTAACTCACAG
CATTTCAGAGGTGGAGCGCCAGCTGCGGGTGGACGAGGAAAGATTGGACA
GCCTAGAAAACCTCAAGAAGGCGCACCAGCGGAGGCTGAGCGAGCTCAGA
GTGAAGCTGGAGGGCAGCACACCGGTGGTTCCCATCGATATCGAACCCGA
CGAGACCGACGACGAGCGGATGGCTCGCTTCCTCAAGGCGGCCGGCGCTG
CCACCGAGTTCCTTGCCGCCGACCTCGAGAAAATCCTCGAAAACAAAAAC
ACCAGTGGTGGTTTATCAAGCGGTCCAACCGCGACCGCGCCGGACCCCTC
CGCAGACAACGCCGTCGAAAGCGTCCAATCGCAAAAGAACCAGGCCACAG
CCAGCAACACCGAGGAAGAAGAAGCGAATCTTTTCGAAAAGCTCCGGAAC
ATATCTGTGGAGGCTGCAGAGTTCTCGCGCCTTAGCAGCATGAAAATTGC
AGAGGGTCGGATGGAGGAAGGTGACGACGGTAGCGGAAGCAGCCGGAACG
CCATTACCGCTGATGCTGATGCTGATGCAGTTGAGCGGGCGGAGGCTCTC
TGCGGCCGAATCGAGAACCTACTCTCCGCCGCCGCCGCCGCCGCCGCCGA
AAATGACAACGACGACGACAGCGATAGCAGCAACAAGTTACGCCGCTCAT
CTACATCAGTGGCAGCCGGTGGGGCGCACCAGCGGAGGCTGAGCGAGCTC
AGAGTGAAGCTGGAGGGCAGCACACCGGTGGTTCCCATCGATATCGAACC
CGACGAGACCGACGACGAGCGGATGGCTCGCTTCCTCAAGGCGGCCGGCG
CTGCCACCGAGTTCCTTGCCGCCGACCTCGAGAAAATCCTCGAAAACAAA
AACACCAGTGGTGGTTTATCAAGCGGTCCAACCGCGACCGCGCCGGACCC
CTCCGCAGACAACGCCGTCGAAAGCGTCCAATCGCAAAAGAACCAGGCCA
CAGCCAGCAACACCGAGGAAGAAGAAGCGAATCTTTTCGAAAAGCTCCGG
AACATATCTGTGGAGGCTGCAGAGTTCTCGCGCCTTAGCAGCATGAAAAT
TGCAGAGGGTCGGATGGAGGAAGGTGACGACGGTAGCGGAAGCAGCCGGA
ACGCCATTACCGCTGATGCTGATGCTGATGCAGTTGAGCGGGCGGAGGCT
CTCTGCGGCCGAATCGAGAACCTACTCTCCGCCGCCGCCGCCGCCGCCGC
CGAAAATGACAACGACGACGACAGCGATAGCAGCAACAAGTTACGCCGCT
CATCTACATCAGTGGCAGCCGGTGGGAGCAAAAACTGCTCGCACATCGGC
GACATAGTGTGCCCGAACGGCCGCAGAGACCTTGCCCTGAGGCTGGCCAC
CGCGCGCGACGCCCTCGTAGCCGTGATCGGGGAGCGAACCAGCGTCGGCA
GCCTGAAAGTAGCCCTGCTAGGGTTACAGTCCAGTTTCCGAGCCGGTATC
GAGCAGAGGCAGGGCGCCGGCGCGATGGAAACCCAGTGGAACGACCTCTG
CGGCAGGGTGTCCGGCCTTGACAACTCCGTCTCCGACATAAGGGGTTCCC
TCTCGGGTGCCGGCCAGCACCGTCACCGTAGCATAGACATGGACACGGAC
AACGATGGAGGAGGGGTAACGGAGGATGACCTCGAAGAACGGCTTGGGTT
CAAGGCAGATGTGACCTGGGTTCAGCGCGAGCTTCAGCGGCTGTGGGACG
CTCTTGACGCTCGCGCGATGGCTAATGTGGCGGGAGCGGGGGGGATCTCC
CGCCCGCGGTCTGCTCCGTCGGCGAACAGCAGCAACAGTCACAACAAAAA
CGACAACCCCGAGATGGCCGGGGAAGAGGAGAGCGACGTGACGCCGAACA
GCCGGTTGATTAGCACGTCGCTGCCGTCGTCATCGGTCTTGCCGACAGGA
ATGGGTGGAGGGAGGTTGCAGCACTCGGAACACGGGCAGAGGTCAAGCTT
CAACGAAGGATCGTCTATCATCAAGGATCTGCTGAGGAAAACCTCTCGCC
TAGAACAACAGAGCAAAAACTGCTCGCACATCGGCGACATAGTGTGCCCG
AACGGCCGCAGAGACCTTGCCCTGAGGCTGGCCACCGCGCGCGACGCCCT
CGTAGCCGTGATCGGGGAGCGAACCAGCGTCGGCAGCCTGAAAGTAGCCC
TGCTAGGGTTACAGTCCAGTTTCCGAGCCGGTATCGAGCAGAGGCAGGGC
GCCGGCGCGATGGAAACCCAGTGGAACGACCTCTGCGGCAGGGTGTCCGG
CCTTGACAACTCCGTCTCCGACATAAGGGGTTCCCTCTCGGGTGCCGGCC
AGCACCGTCACCGTAGCATAGACATGGACACGGACAACGATGGAGGAGGG
GTAACGGAGGATGACCTCGAAGAACGGCTTGGGTTCAAGGCAGATGTGAC
CTGGGTTCAGCGCGAGCTTCAGCGGCTGTGGGACGCTCTTGACGCTCGCG
CGATGGCTAATGTGGCGGGAGCGGGGGGGATCTCCCGCCCGCGGTCTGCT
CCGTCGGCGAACAGCAGCAACAGTCACAACAAAAACGACAACCCCGAGAT
GGCCGGGGAAGAGGAGAGCGACGTGACGCCGAACAGCCGGTTGATTAGCA
CGTCGCTGCCGTCGTCATCGGTCTTGCCGACAGGAATGGGTGGAGGGAGG
TTGCAGCACTCGGAACACGGGCAGAGGTCAAGCTTCAACGAAGGATCGTC
TATCATCAAGGATCTGCTGAGGAAAACCTCTCGCCTAGAACAACAGATGG
CGTCGAAGGCCGACCACGACGAAGTGACAAGAGCCTTGTCGTCTATCGAC
AACAAGCTGCGCAAGGTCGGCATCGTTATCCCGGCTCTTCAGGAGGAGCT
GTCCAACAAGATCGAGAACAAGGACCTCACAAAATGGCGTCGAAGGCCGA
CCACGACGAAGTGACAAGAGCCTTGTCGTCTATCGACAACAAGCTGCGCA
AGGTCGGCATCGTTATCCCGGCTCTTCAGGAGGAGCTGTCCAACAAGATC
GAGAACAAGGACCTCACAAAGCTAGTTGCCCTGGTTTCGAACGGTGGCAG
CATCAGTGACTGGCCTCCAGGAGGCCGCAACTCCACCACCACCACCAACA
GCAGCAGCAACAACAACGACAACACTGGCGCTGTCCTCGCCTCTCGACTC
AACTCCAAGTTTCGCTGCTTGTCATGCGATCGGCCCCTGCCCGCTCTGGG
TCCCCCGGGTCCTCCAAAACTCGGCTCTTCCGGCCTGTCCATTGCTGGAG
CCGGCGCCCCACGGAGCCCCCAGATAACAAAAACCCAGCCTGGGCAGCAG
CGACTTCGGCTTACAGCGGGACATGTGGGGGATGATGCTGATGCGTTCTC
CAGGCCGACCAGCCCCGCCATAAAGTCGCCTACATCGGAGGATAACGGTG
ACTATGATGTTGCTGGGTGGGGCGGCGGCGGTGGCGGCGGCGGCTCCGGC
ATGGCATTGGGAGGAAACGCCGAGAATAACGACTACAGCAGCGCCTACTA
CAGCAAGGACAAAGGCGGCGGTGGACGACGCCGACAGCAGCAGCGCGGAG
GGGATCAGCCATTAGGGACAGGGCGGTTGGAGCCCTTAGGCGCCAACGGG
GAGCAGATCACCGGGGTGTTGTCGAGGTATCCGAGAATGATGCCCCCGCC
ATCTAGAGTTCGGACCGCTGCTGGAGGTGGCATTGGTTCCAGACCGGGAT
CTTCTTCCGGGGGCAGAATATAGGCTAGTTGCCCTGGTTTCGAACGGTGG
CAGCATCAGTGACTGGCCTCCAGGAGGCCGCAACTCCACCACCACCACCA
ACAGCAGCAGCAACAACAACGACAACACTGGCGCTGTCCTCGCCTCTCGA
CTCAACTCCAAGTTTCGCTGCTTGTCATGCGATCGGCCCCTGCCCGCTCT
GGGTCCCCCGGGTCCTCCAAAACTCGGCTCTTCCGGCCTGTCCATTGCTG
GAGCCGGCGCCCCACGGAGCCCCCAGATAACAAAAACCCAGCCTGGGCAG
CAGCGACTTCGGCTTACAGCGGGACATGTGGGGGATGATGCTGATGCGTT
CTCCAGGCCGACCAGCCCCGCCATAAAGTCGCCTACATCGGAGGATAACG
GTGACTATGATGTTGCTGGGTGGGGCGGCGGCGGTGGCGGCGGCGGCTCC
GGCATGGCATTGGGAGGAAACGCCGAGAATAACGACTACAGCAGCGCCTA
CTACAGCAAGGACAAAGGCGGCGGTGGACGACGCCGACAGCAGCAGCGCG
GAGGGGATCAGCCATTAGGGACAGGGCGGTTGGAGCCCTTAGGCGCCAAC
GGGGAGCAGATCACCGGGGTGTTGTCGAGGTATCCGAGAATGATGCCCCC
GCCATCTAGAGTTCGGACCGCTGCTGGAGGTGGCATTGGTTCCAGACCGG
GATCTTCTTCCGGGGGCAGAATATAG
back to top