mRNA_L-elsbetiae_contig1156.1359.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1156.1359.1
Unique NamemRNA_L-elsbetiae_contig1156.1359.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: D8LJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN8_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.510e-11
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    7 CDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTETAG 123
            C+PNPCLN G+C +DP GG+ C+CS  YGGM C+T+T G
Sbjct:  383 CNPNPCLNEGSCEVDPNGGYSCSCSSSYGGMNCETDTTG 421
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.670e-11
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 CDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTETAG 123
            C+PNPC+NGG+C +DP GG+ C+C   YGGM C+T+  G
Sbjct:  505 CNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTG 543
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.670e-11
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 CDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTETAG 123
            C+PNPC+NGG+C +DP GG+ C+C   YGGM C+T+  G
Sbjct:  414 CNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTG 452
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.670e-11
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 CDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTETAG 123
            C+PNPC+NGG+C +DP GG+ C+C   YGGM C+T+  G
Sbjct:  401 CNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTG 439
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: D8LED2_ECTSI (Ig-like protein, group 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 6.360e-11
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    7 CDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTETAG 123
            CDPNPC+NGG+C +DP GG+ C+C   YG M C+T+  G
Sbjct:  127 CDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTG 165
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: UPI001BD2818B (hyaluronan-binding protein 2-like n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD2818B)

HSP 1 Score: 54.7 bits (130), Expect = 1.590e-7
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 DTCDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQT 111
            D CDPNPCLNGG+C    GGG +C C + Y G +CQT
Sbjct:   65 DQCDPNPCLNGGSCDTYVGGGFICACPEPYTGKKCQT 101
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: A0A820F2F2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A820F2F2_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 3.450e-7
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 DTCDPNPCLNGGTCAIDPG-GGHLCTCSDGYGGMQCQT 111
            D C PNPCLNGGTC    G GG+ CTC  G+ G++C+T
Sbjct:    4 DACQPNPCLNGGTCRPTNGNGGYQCTCPSGFTGLRCET 41
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: A0A815TX07_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815TX07_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 5.270e-7
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:    1 DTCDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQ 108
            D C+PNPCLNGGTC  +  GG +C C  G+ G +C+
Sbjct:    1 DVCNPNPCLNGGTCMTNGVGGFICQCPPGFSGQRCE 36
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: A0A821E1S3_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A821E1S3_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 5.990e-7
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:    7 CDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTET 117
            C PNPC NGG+CA+ PGGG  C C  G+ G +C+  +
Sbjct:   12 CLPNPCRNGGSCAVVPGGGFRCICGAGFTGARCELSS 48
[Close]
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Match: A0A8B8B0W9_CRAVI (protocadherin Fat 4-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B0W9_CRAVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-6
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    7 CDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTETAG 123
            C+PNPCLNGGTC+    G  +C C  G+ G  CQT+ +G
Sbjct:   24 CNPNPCLNGGTCSQSSSGSAVCACVQGWTGSLCQTQVSG 62
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1156.1359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJN8_ECTSI2.510e-1161.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7J6_ECTSI4.670e-1156.41Putative zinc metalloendopeptidase n=1 Tax=Ectocar... [more]
D8LED1_ECTSI4.670e-1156.41PR1-like metalloprotease n=2 Tax=Ectocarpus silicu... [more]
D8LED3_ECTSI4.670e-1156.41WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R... [more]
D8LED2_ECTSI6.360e-1156.41Ig-like protein, group 2 n=1 Tax=Ectocarpus silicu... [more]
UPI001BD2818B1.590e-759.46hyaluronan-binding protein 2-like n=1 Tax=Cheilinu... [more]
A0A820F2F2_9BILA3.450e-757.89Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]
A0A815TX07_9BILA5.270e-752.78Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]
A0A821E1S3_9BILA5.990e-751.35Hypothetical protein (Fragment) n=1 Tax=Rotaria ma... [more]
A0A8B8B0W9_CRAVI1.260e-651.28protocadherin Fat 4-like n=1 Tax=Crassostrea virgi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1156contigL-elsbetiae_contig1156:23109..23231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog2880.D8LED4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E9TD@1,2SG44@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.1412997-CDS-L-elsbetiae_contig1156:23108..232311622815361.1412997-CDS-L-elsbetiae_contig1156:23108..23231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1156 23109..23231 +
1691682860.6142483-CDS-L-elsbetiae_contig1156:23108..232311691682860.6142483-CDS-L-elsbetiae_contig1156:23108..23231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1156 23109..23231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1156.1359.1prot_L-elsbetiae_contig1156.1359.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1156 23109..23231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1156.1359.1

>prot_L-elsbetiae_contig1156.1359.1 ID=prot_L-elsbetiae_contig1156.1359.1|Name=mRNA_L-elsbetiae_contig1156.1359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=41bp
DTCDPNPCLNGGTCAIDPGGGHLCTCSDGYGGMQCQTETAG
back to top

mRNA from alignment at L-elsbetiae_contig1156:23109..23231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1156.1359.1 ID=mRNA_L-elsbetiae_contig1156.1359.1|Name=mRNA_L-elsbetiae_contig1156.1359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=123bp|location=Sequence derived from alignment at L-elsbetiae_contig1156:23109..23231+ (Laminarionema elsbetiae ELsaHSoW15)
GATACTTGTGACCCAAACCCGTGCCTCAATGGCGGGACTTGCGCAATTGA
TCCTGGAGGTGGGCATCTGTGCACGTGCAGTGACGGCTACGGTGGCATGC
AATGCCAAACCGAGACTGCCGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1156:23109..23231+

>mRNA_L-elsbetiae_contig1156.1359.1 ID=mRNA_L-elsbetiae_contig1156.1359.1|Name=mRNA_L-elsbetiae_contig1156.1359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig1156:23109..23231+ (Laminarionema elsbetiae ELsaHSoW15)
GATACTTGTGACCCAAACCCGTGCCTCAATGGCGGGACTTGCGCAATTGA
TCCTGGAGGTGGGCATCTGTGCACGTGCAGTGACGGCTACGGTGGCATGC
AATGCCAAACCGAGACTGCCGGTGATACTTGTGACCCAAACCCGTGCCTC
AATGGCGGGACTTGCGCAATTGATCCTGGAGGTGGGCATCTGTGCACGTG
CAGTGACGGCTACGGTGGCATGCAATGCCAAACCGAGACTGCCGGT
back to top