mRNA_L-elsbetiae_contig11559.1358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11559.1358.1
Unique NamemRNA_L-elsbetiae_contig11559.1358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: D7FY04_ECTSI (Putative regulatory protein cII n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY04_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 4.440e-117
Identity = 165/220 (75.00%), Postives = 188/220 (85.45%), Query Frame = 1
Query:    7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALGPPLMGRWD 666
            G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC PDTY HNAIKALP IM DW+ TR +ARNTA+H GLA DVQI   NPRILG+SV RYT ++++PA+NF +WM RIES L EIS+ +H +  L GMAGTPG+PDT PSIL KVP+FN+ +ALSH+YGLPVIALG  LM  WD
Sbjct:  154 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPDTYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIESQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMSVWD 373          
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: D7FY09_ECTSI (Putative regulatory protein cII n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY09_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 1.630e-112
Identity = 163/220 (74.09%), Postives = 189/220 (85.91%), Query Frame = 1
Query:    7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALGPPLMGRWD 666
            G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC P+TY HNAIKALP IM DW+ TR +ARNTA+H GLA DVQI   NPRILG+SV RYT ++++PA+NF +WM RIE+ L EIS+ +H +  L GMAGTPG+PDT PSIL KVP+FN+ +ALSH+YGLPVIALG  LMG W+
Sbjct:  475 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPETYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIENQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMGVWN 694          
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: UPI00156D48D6 (AAA family ATPase n=1 Tax=Dorea formicigenerans TaxID=39486 RepID=UPI00156D48D6)

HSP 1 Score: 98.6 bits (244), Expect = 8.420e-21
Identity = 71/217 (32.72%), Postives = 101/217 (46.54%), Query Frame = 1
Query:   13 LFLLPGHEGIVDYDQKVTVAY----GTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTP---GEPDTQPSI-LVKVPDFNRLAALSHYYGLPVIAL 639
            LFLLPGH    ++D    +A       NLM     PGA+ K++ LTA++   DIVLVD SP     N +I++ SDY  VPCAPD + + AI +L  I   W IT    ++       +A  ++    P  LG+   RY      P + F  W+  I      +  K+  +P L      P   G  + + S  L  + DFN L A S  + +PV  L
Sbjct:   97 LFLLPGHVQFAEFDTTYNIAETMTGSLNLMKNV--PGAFRKMLELTAKEYKIDIVLVDMSPSISATNSNILMQSDYFIVPCAPDYFCYMAINSLLTIFPKWEITYKKMQDNDVFQ--SATYKMKNTPPIFLGILHQRYRPRNGSPVKAFAEWINDINDL---VDSKL--VPVLREHNMLPKQLGSNNYEESYNLCNIADFNSLIAQSQEHNVPVFLL 304          
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: A0A6N7HJG8_9PSEU (AAA family ATPase n=1 Tax=Actinophytocola sp. TaxID=1872138 RepID=A0A6N7HJG8_9PSEU)

HSP 1 Score: 66.6 bits (161), Expect = 2.320e-9
Identity = 55/223 (24.66%), Postives = 99/223 (44.39%), Query Frame = 1
Query:    1 GDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAA---PGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIE-----SALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALGP 645
            GD  L LL G   +  ++  ++ A+   L  +  A     A+ +++   A    AD+VLVD  P  G +N  +++ SD++ +P APD +S   ++ L   +  W   R        H     D+ + AG+  ++G  VM +    ++P + +  W+  I      S L + +E++   PA          P+T P  L ++  +  L  L+     P+ AL P
Sbjct:   92 GDDRLVLLAGDLELSSFEDDLSGAWPECLDGKPRAFRVMSAFWRVLNDAASSHEADVVLVDVGPSLGAINRGVLVASDHVVLPVAPDLFSLQGLRNLGPTLAGW---RSGWAERRKHG--PPDLAVPAGDMAVVGYVVMGHAVRLDRPVKAYQRWLAEIPGEFRGSVLRQATEQV---PA----------PETDPYCLAQLKHYRSLMPLAQEARKPMFALKP 296          
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: UPI0005850885 (ParA family protein n=1 Tax=Pseudoxanthomonas sp. GW2 TaxID=1211114 RepID=UPI0005850885)

HSP 1 Score: 61.6 bits (148), Expect = 1.300e-7
Identity = 44/165 (26.67%), Postives = 74/165 (44.85%), Query Frame = 1
Query:  151 GADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYT-QMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALG 642
            G D +L D  P  G +   +IL+ D +F+P APD +SH AI  + AIM +W+    +  +T    GL+A +      P   G  V  Y  Q   +   ++  W   I+ A+  I+  + G    +G+     E   +P I   + D   +A ++   G  +  +G
Sbjct:  149 GFDYILCDVGPSAGSITRMVILSCDGIFIPTAPDRFSHQAILGMGAIMTEWLTRHRAILSTFAPFGLSASLV----EPVFYGAVVNNYKIQRAGRKKNSYLKWESLIKEAI--INNLLDG----KGLKPVAPEVKIEPFI-ASIRDVGPMAPVAQMVGKAIFDIG 302          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FY04_ECTSI4.440e-11775.00Putative regulatory protein cII n=2 Tax=Ectocarpus... [more]
D7FY09_ECTSI1.630e-11274.09Putative regulatory protein cII n=1 Tax=Ectocarpus... [more]
UPI00156D48D68.420e-2132.72AAA family ATPase n=1 Tax=Dorea formicigenerans Ta... [more]
A0A6N7HJG8_9PSEU2.320e-924.66AAA family ATPase n=1 Tax=Actinophytocola sp. TaxI... [more]
UPI00058508851.300e-726.67ParA family protein n=1 Tax=Pseudoxanthomonas sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11559contigL-elsbetiae_contig11559:1562..2227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.3
Seed ortholog evalue1e-95
Seed eggNOG ortholog2880.D7FY04
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AAA domain
EggNOG OGs2CZ0S@1,2S7P2@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size666
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.1132007-CDS-L-elsbetiae_contig11559:1561..22271622815361.1132007-CDS-L-elsbetiae_contig11559:1561..2227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11559 1562..2227 -
1691682860.603586-CDS-L-elsbetiae_contig11559:1561..22271691682860.603586-CDS-L-elsbetiae_contig11559:1561..2227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11559 1562..2227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11559.1358.1prot_L-elsbetiae_contig11559.1358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11559 1562..2227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11559.1358.1

>prot_L-elsbetiae_contig11559.1358.1 ID=prot_L-elsbetiae_contig11559.1358.1|Name=mRNA_L-elsbetiae_contig11559.1358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
GDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKC
GADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD
WIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFG
FWMGRIESALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLA
ALSHYYGLPVIALGPPLMGRWD
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mRNA from alignment at L-elsbetiae_contig11559:1562..2227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11559.1358.1 ID=mRNA_L-elsbetiae_contig11559.1358.1|Name=mRNA_L-elsbetiae_contig11559.1358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig11559:1562..2227- (Laminarionema elsbetiae ELsaHSoW15)
GGCGATGGGGCGCTGTTCCTGCTCCCCGGGCACGAGGGAATTGTCGACTA CGATCAAAAGGTCACGGTCGCCTACGGCACTAACCTCATGGTCGAGGCGG CTGCCCCGGGCGCGTGGAATAAGCTCATGGCGCTCACTGCCCGCAAGTGC GGGGCAGACATCGTCCTCGTCGACTGCAGCCCTCACAGGGGAAAGCTCAA CATGCACATCATCCTGACGTCCGACTACCTGTTCGTACCGTGCGCTCCGG ACACGTACAGCCACAACGCCATCAAAGCCCTCCCTGCCATCATGAAGGAC TGGATTATCACTCGGCACAGCGCCCGCAATACTGCTACTCACAATGGACT GGCCGCGGACGTGCAGATTCTGGCGGGTAACCCTCGGATTTTGGGGGTTT CGGTGATGAGGTACACCCAGATGAAGAACCAACCAGCGAGGAACTTCGGG TTCTGGATGGGAAGGATCGAGAGCGCTCTTCATGAAATCAGCGAGAAAAT ACATGGCATGCCGGCCCTGGAGGGTATGGCGGGCACGCCTGGGGAGCCAG ACACACAGCCGTCGATCCTCGTGAAGGTGCCCGACTTCAACCGACTCGCC GCTTTGAGCCACTACTACGGTCTTCCGGTCATTGCCTTGGGTCCGCCTCT GATGGGCCGCTGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11559:1562..2227-

>mRNA_L-elsbetiae_contig11559.1358.1 ID=mRNA_L-elsbetiae_contig11559.1358.1|Name=mRNA_L-elsbetiae_contig11559.1358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig11559:1562..2227- (Laminarionema elsbetiae ELsaHSoW15)
GGCGATGGGGCGCTGTTCCTGCTCCCCGGGCACGAGGGAATTGTCGACTA
CGATCAAAAGGTCACGGTCGCCTACGGCACTAACCTCATGGTCGAGGCGG
CTGCCCCGGGCGCGTGGAATAAGCTCATGGCGCTCACTGCCCGCAAGTGC
GGGGCAGACATCGTCCTCGTCGACTGCAGCCCTCACAGGGGAAAGCTCAA
CATGCACATCATCCTGACGTCCGACTACCTGTTCGTACCGTGCGCTCCGG
ACACGTACAGCCACAACGCCATCAAAGCCCTCCCTGCCATCATGAAGGAC
TGGATTATCACTCGGCACAGCGCCCGCAATACTGCTACTCACAATGGACT
GGCCGCGGACGTGCAGATTCTGGCGGGTAACCCTCGGATTTTGGGGGTTT
CGGTGATGAGGTACACCCAGATGAAGAACCAACCAGCGAGGAACTTCGGG
TTCTGGATGGGAAGGATCGAGAGCGCTCTTCATGAAATCAGCGAGAAAAT
ACATGGCATGCCGGCCCTGGAGGGTATGGCGGGCACGCCTGGGGAGCCAG
ACACACAGCCGTCGATCCTCGTGAAGGTGCCCGACTTCAACCGACTCGCC
GCTTTGAGCCACTACTACGGTCTTCCGGTCATTGCCTTGGGTCCGCCTCT
GATGGGCCGCTGGGACGGCGATGGGGCGCTGTTCCTGCTCCCCGGGCACG
AGGGAATTGTCGACTACGATCAAAAGGTCACGGTCGCCTACGGCACTAAC
CTCATGGTCGAGGCGGCTGCCCCGGGCGCGTGGAATAAGCTCATGGCGCT
CACTGCCCGCAAGTGCGGGGCAGACATCGTCCTCGTCGACTGCAGCCCTC
ACAGGGGAAAGCTCAACATGCACATCATCCTGACGTCCGACTACCTGTTC
GTACCGTGCGCTCCGGACACGTACAGCCACAACGCCATCAAAGCCCTCCC
TGCCATCATGAAGGACTGGATTATCACTCGGCACAGCGCCCGCAATACTG
CTACTCACAATGGACTGGCCGCGGACGTGCAGATTCTGGCGGGTAACCCT
CGGATTTTGGGGGTTTCGGTGATGAGGTACACCCAGATGAAGAACCAACC
AGCGAGGAACTTCGGGTTCTGGATGGGAAGGATCGAGAGCGCTCTTCATG
AAATCAGCGAGAAAATACATGGCATGCCGGCCCTGGAGGGTATGGCGGGC
ACGCCTGGGGAGCCAGACACACAGCCGTCGATCCTCGTGAAGGTGCCCGA
CTTCAACCGACTCGCCGCTTTGAGCCACTACTACGGTCTTCCGGTCATTG
CCTTGGGTCCGCCTCTGATGGGCCGCTGGGAC
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