mRNA_L-elsbetiae_contig11559.1358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: D7FY04_ECTSI (Putative regulatory protein cII n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY04_ECTSI) HSP 1 Score: 352 bits (903), Expect = 4.440e-117 Identity = 165/220 (75.00%), Postives = 188/220 (85.45%), Query Frame = 1 Query: 7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALGPPLMGRWD 666 G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC PDTY HNAIKALP IM DW+ TR +ARNTA+H GLA DVQI NPRILG+SV RYT ++++PA+NF +WM RIES L EIS+ +H + L GMAGTPG+PDT PSIL KVP+FN+ +ALSH+YGLPVIALG LM WD Sbjct: 154 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPDTYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIESQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMSVWD 373
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: D7FY09_ECTSI (Putative regulatory protein cII n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY09_ECTSI) HSP 1 Score: 350 bits (897), Expect = 1.630e-112 Identity = 163/220 (74.09%), Postives = 189/220 (85.91%), Query Frame = 1 Query: 7 GALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALGPPLMGRWD 666 G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC P+TY HNAIKALP IM DW+ TR +ARNTA+H GLA DVQI NPRILG+SV RYT ++++PA+NF +WM RIE+ L EIS+ +H + L GMAGTPG+PDT PSIL KVP+FN+ +ALSH+YGLPVIALG LMG W+ Sbjct: 475 GGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPETYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIENQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMGVWN 694
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: UPI00156D48D6 (AAA family ATPase n=1 Tax=Dorea formicigenerans TaxID=39486 RepID=UPI00156D48D6) HSP 1 Score: 98.6 bits (244), Expect = 8.420e-21 Identity = 71/217 (32.72%), Postives = 101/217 (46.54%), Query Frame = 1 Query: 13 LFLLPGHEGIVDYDQKVTVAY----GTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTP---GEPDTQPSI-LVKVPDFNRLAALSHYYGLPVIAL 639 LFLLPGH ++D +A NLM PGA+ K++ LTA++ DIVLVD SP N +I++ SDY VPCAPD + + AI +L I W IT ++ +A ++ P LG+ RY P + F W+ I + K+ +P L P G + + S L + DFN L A S + +PV L Sbjct: 97 LFLLPGHVQFAEFDTTYNIAETMTGSLNLMKNV--PGAFRKMLELTAKEYKIDIVLVDMSPSISATNSNILMQSDYFIVPCAPDYFCYMAINSLLTIFPKWEITYKKMQDNDVFQ--SATYKMKNTPPIFLGILHQRYRPRNGSPVKAFAEWINDINDL---VDSKL--VPVLREHNMLPKQLGSNNYEESYNLCNIADFNSLIAQSQEHNVPVFLL 304
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: A0A6N7HJG8_9PSEU (AAA family ATPase n=1 Tax=Actinophytocola sp. TaxID=1872138 RepID=A0A6N7HJG8_9PSEU) HSP 1 Score: 66.6 bits (161), Expect = 2.320e-9 Identity = 55/223 (24.66%), Postives = 99/223 (44.39%), Query Frame = 1 Query: 1 GDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAA---PGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYTQMKNQPARNFGFWMGRIE-----SALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALGP 645 GD L LL G + ++ ++ A+ L + A A+ +++ A AD+VLVD P G +N +++ SD++ +P APD +S ++ L + W R H D+ + AG+ ++G VM + ++P + + W+ I S L + +E++ PA P+T P L ++ + L L+ P+ AL P Sbjct: 92 GDDRLVLLAGDLELSSFEDDLSGAWPECLDGKPRAFRVMSAFWRVLNDAASSHEADVVLVDVGPSLGAINRGVLVASDHVVLPVAPDLFSLQGLRNLGPTLAGW---RSGWAERRKHG--PPDLAVPAGDMAVVGYVVMGHAVRLDRPVKAYQRWLAEIPGEFRGSVLRQATEQV---PA----------PETDPYCLAQLKHYRSLMPLAQEARKPMFALKP 296
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Match: UPI0005850885 (ParA family protein n=1 Tax=Pseudoxanthomonas sp. GW2 TaxID=1211114 RepID=UPI0005850885) HSP 1 Score: 61.6 bits (148), Expect = 1.300e-7 Identity = 44/165 (26.67%), Postives = 74/165 (44.85%), Query Frame = 1 Query: 151 GADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKDWIITRHSARNTATHNGLAADVQILAGNPRILGVSVMRYT-QMKNQPARNFGFWMGRIESALHEISEKIHGMPALEGMAGTPGEPDTQPSILVKVPDFNRLAALSHYYGLPVIALG 642 G D +L D P G + +IL+ D +F+P APD +SH AI + AIM +W+ + +T GL+A + P G V Y Q + ++ W I+ A+ I+ + G +G+ E +P I + D +A ++ G + +G Sbjct: 149 GFDYILCDVGPSAGSITRMVILSCDGIFIPTAPDRFSHQAILGMGAIMTEWLTRHRAILSTFAPFGLSASLV----EPVFYGAVVNNYKIQRAGRKKNSYLKWESLIKEAI--INNLLDG----KGLKPVAPEVKIEPFI-ASIRDVGPMAPVAQMVGKAIFDIG 302 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11559.1358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11559.1358.1 >prot_L-elsbetiae_contig11559.1358.1 ID=prot_L-elsbetiae_contig11559.1358.1|Name=mRNA_L-elsbetiae_contig11559.1358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp GDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCback to top mRNA from alignment at L-elsbetiae_contig11559:1562..2227- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11559.1358.1 ID=mRNA_L-elsbetiae_contig11559.1358.1|Name=mRNA_L-elsbetiae_contig11559.1358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig11559:1562..2227- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11559:1562..2227- >mRNA_L-elsbetiae_contig11559.1358.1 ID=mRNA_L-elsbetiae_contig11559.1358.1|Name=mRNA_L-elsbetiae_contig11559.1358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig11559:1562..2227- (Laminarionema elsbetiae ELsaHSoW15)back to top |