mRNA_L-elsbetiae_contig11531.1344.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11531.1344.1
Unique NamemRNA_L-elsbetiae_contig11531.1344.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 7.560e-36
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            R+Y+GSLHYELKESDI +IF NFGALKLVDMSHD+STGRHKGFCFIEYVDV++ADAALRAMNGFELAGRAIKV
Sbjct:  288 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKV 360
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.820e-26
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            R+Y+GSL+YEL+ESDI AIFG FG ++ VDMS D +TG+HKGFCFIEY++  +A+AAL +MNGFELAGR IKV
Sbjct:  120 RIYIGSLYYELQESDILAIFGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKV 192
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-22
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            R+Y+GSL+Y+L E DIR +FG+FG +  V MS + +TG+HKGFCFIEY +  AAD AL+AMNGFELAGR IKV
Sbjct:  139 RIYVGSLNYDLTEVDIRNVFGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKV 211
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: A0A7S2AH99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AH99_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.050e-20
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            R+Y+GSLHY+L E DIR +F  FG +  V MS++ +TG+ KG+CFIEY +  +A+ AL+AMNGFELAGR IKV
Sbjct:  112 RIYVGSLHYDLAEHDIRGVFEAFGKITEVTMSYEPATGKSKGYCFIEYENPNSANQALQAMNGFELAGRQIKV 184
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: A0A433QFW3_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QFW3_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 3.350e-20
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            R+Y+GS+++EL E+ I+A+FG FG++K V MS D +TG+HKGFCFIE+    AA  AL AMNG +L GR +KV
Sbjct:  131 RIYVGSINFELNEAHIKAVFGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALEAMNGADLGGRQLKV 203
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: A0A433PH05_9FUNG (RRM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PH05_9FUNG)

HSP 1 Score: 89.4 bits (220), Expect = 5.890e-20
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            R+Y+GS+++EL E+ I+A+FG FG++K V MS D +TG+HKGFCFIE+    AA  AL AMNG +L GR +KV
Sbjct:  128 RIYVGSINFELNEAHIKAVFGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALDAMNGADLGGRQLKV 200
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: L1JR44_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR44_GUITC)

HSP 1 Score: 90.9 bits (224), Expect = 9.100e-20
Identity = 41/73 (56.16%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            RLY+GSLH++LKE+D+RAIF  FG +K ++MS++ +TG+ KG+ FIEY++   ADA  +AM+GF +AGR IKV
Sbjct:   99 RLYVGSLHFDLKEADVRAIFQPFGPIKTIEMSYEPTTGKSKGYAFIEYMNDAQADACEKAMDGFMIAGRPIKV 171
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: A0A7S4PQL3_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PQL3_GUITH)

HSP 1 Score: 90.9 bits (224), Expect = 1.010e-19
Identity = 41/73 (56.16%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            RLY+GSLH++LKE+D+RAIF  FG +K ++MS++ +TG+ KG+ FIEY++   ADA  +AM+GF +AGR IKV
Sbjct:   87 RLYVGSLHFDLKEADVRAIFQPFGPIKTIEMSYEPTTGKSKGYAFIEYMNDAQADACEKAMDGFMIAGRPIKV 159
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BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: F0WWX1_9STRA (Poly(U)bindingsplicing factor PUF60 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWX1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-19
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            RLY+G+L+YELKE DIR +F  FGA+  +D+S +  TGR KGFCF+E+ DV AA++A++ +NG  +A RAIKV
Sbjct:  137 RLYVGNLYYELKEDDIRNVFAPFGAIHSIDLSMEPGTGRSKGFCFLEFNDVLAAESAVQVLNGSTMANRAIKV 209
[Close]
BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Match: A0A433DCP8_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DCP8_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 2.020e-19
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVDVRAADAALRAMNGFELAGRAIKV 219
            R+Y+GS+++EL E+ I+A+FG FG++K V MS D +TG+HKGFCFIE+    AA  AL AMNG +L GR +KV
Sbjct:  131 RIYVGSINFELNEAHIKAVFGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALEAMNGADLGGRQLKV 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11531.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX1_ECTSI7.560e-3689.04RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A836CC18_9STRA5.820e-2668.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WU02_9STRA1.030e-2264.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2AH99_9STRA3.050e-2058.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A433QFW3_9FUNG3.350e-2056.16Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A433PH05_9FUNG5.890e-2056.16RRM domain-containing protein n=1 Tax=Endogone sp.... [more]
L1JR44_GUITC9.100e-2056.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4PQL3_GUITH1.010e-1956.16Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
F0WWX1_9STRA1.700e-1956.16Poly(U)bindingsplicing factor PUF60 putative n=1 T... [more]
A0A433DCP8_9FUNG2.020e-1956.16Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11531contigL-elsbetiae_contig11531:235..1194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue4.2e-30
Seed eggNOG ortholog2880.D7FWX1
Preferred namePUF60
KEGG koko:K11798,ko:K12811,ko:K12838
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0124@1,KOG0124@2759
EC3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.921052-CDS-L-elsbetiae_contig11531:234..4031622815359.921052-CDS-L-elsbetiae_contig11531:234..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 235..403 -
1691682859.883445-CDS-L-elsbetiae_contig11531:234..4031691682859.883445-CDS-L-elsbetiae_contig11531:234..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 235..403 -
1622815359.9330318-CDS-L-elsbetiae_contig11531:1144..11941622815359.9330318-CDS-L-elsbetiae_contig11531:1144..1194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 1145..1194 -
1691682859.9027386-CDS-L-elsbetiae_contig11531:1144..11941691682859.9027386-CDS-L-elsbetiae_contig11531:1144..1194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 1145..1194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11531.1344.1prot_L-elsbetiae_contig11531.1344.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11531 235..1194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11531.1344.1

>prot_L-elsbetiae_contig11531.1344.1 ID=prot_L-elsbetiae_contig11531.1344.1|Name=mRNA_L-elsbetiae_contig11531.1344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
RLYLGSLHYELKESDIRAIFGNFGALKLVDMSHDASTGRHKGFCFIEYVD
VRAADAALRAMNGFELAGRAIKV
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mRNA from alignment at L-elsbetiae_contig11531:235..1194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11531.1344.1 ID=mRNA_L-elsbetiae_contig11531.1344.1|Name=mRNA_L-elsbetiae_contig11531.1344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig11531:235..1194- (Laminarionema elsbetiae ELsaHSoW15)
CGCCTGTATCTGGGTTCTCTCCACTACGAGCTGAAGGAGAGCGACATTAG
GTGAGTGCATGGCCCCATTGGATAGCTCGAACCGACCCTGCCGTTGTTGT
TTCGTGCTTCCAACATGGCTCAACGAAAAATAATGTCACAGCTGCTTTAG
CCTTTTTTGTACCCGTGGACCCGGGCGTTCTCCCCTCTCCTCTGGTGTAT
CTCTCTGGACATCTTCCTTGCCTTCCCGTCACGGCACCACCGCACGGCCG
ATAGATACCTATATAGACACAAAGAGTTCGTAGACAGTGAGATAGATTAT
GTTATGTGTTAGAATCGGCGAAAGCGCGTTGGATGGTGGCTGTATTAGGC
CTGGCACAAACGAAACACGCGTGTAAGGCGCAATCAGGCACTCAACGCGC
TCTCTGGCGTCGTGCCTCTTCTTCTCTTTCCTCCCCCACTGCTGACTGGC
CACATGCTGGCGTCCATCTACATTTTTGCTACAACGCCCCCCCCTCCCCC
CGTCATGTATATACTAAGTACTTAGCCCAACGTGAGACCTTCATCGCCAT
CTTTGGTCCTCACCTTTGATCGTCGCGGTAGTCACCGGGACGAATGATGA
GAGAGATGGCCGGATGGCATGTGTTGGGCGGTGCGCCCTTTACCTCCCTC
TTGTGTTGCCGCTTGACTTCTTTATCGCAGGACTTTTTTTTCTTGACTTT
GGAGGCTCGAAAGAGCTTTGAACATAGGTCCTGATGCACCCCCCCCCATC
TTCCATTTACGATGCCCCTTGCCTTGGTTTTATTGTCGCAGGGCGATCTT
CGGGAACTTTGGGGCGTTGAAACTGGTGGACATGTCCCACGACGCGTCGA
CAGGACGGCACAAGGGCTTCTGCTTCATCGAGTACGTTGACGTTAGGGCG
GCGGACGCGGCTCTCAGGGCCATGAATGGCTTCGAGCTCGCGGGCCGTGC
CATCAAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11531:235..1194-

>mRNA_L-elsbetiae_contig11531.1344.1 ID=mRNA_L-elsbetiae_contig11531.1344.1|Name=mRNA_L-elsbetiae_contig11531.1344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig11531:235..1194- (Laminarionema elsbetiae ELsaHSoW15)
CGCCTGTATCTGGGTTCTCTCCACTACGAGCTGAAGGAGAGCGACATTAG
CGCCTGTATCTGGGTTCTCTCCACTACGAGCTGAAGGAGAGCGACATTAG
GGCGATCTTCGGGAACTTTGGGGCGTTGAAACTGGTGGACATGTCCCACG
ACGCGTCGACAGGACGGCACAAGGGCTTCTGCTTCATCGAGTACGTTGAC
GTTAGGGCGGCGGACGCGGCTCTCAGGGCCATGAATGGCTTCGAGCTCGC
GGGCCGTGCCATCAAGGTAGGCGATCTTCGGGAACTTTGGGGCGTTGAAA
CTGGTGGACATGTCCCACGACGCGTCGACAGGACGGCACAAGGGCTTCTG
CTTCATCGAGTACGTTGACGTTAGGGCGGCGGACGCGGCTCTCAGGGCCA
TGAATGGCTTCGAGCTCGCGGGCCGTGCCATCAAGGTA
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