mRNA_L-elsbetiae_contig11528.1339.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11528.1339.1
Unique NamemRNA_L-elsbetiae_contig11528.1339.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11528.1339.1 vs. uniprot
Match: A0A6H5KJL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.120e-11
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   13 SQDGLREKVVAMGGSFDVNLTTSTTHLVAASSETEKYRVATRM 141
            +Q+ LREKV AMGGSFDVNLT STTHL+AAS +TEKYRVAT M
Sbjct:   23 TQEDLREKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGM 65
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BLAST of mRNA_L-elsbetiae_contig11528.1339.1 vs. uniprot
Match: D7G795_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G795_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 6.120e-11
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 AVSQDGLREKVVAMGGSFDVNLTTSTTHLVAASSETEKYRVATRM 141
            A  Q+ LREKV AMGGSFDVNLT STTHL+AAS +TEKYRVAT M
Sbjct:   18 AHQQEDLREKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGM 62
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11528.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJL2_9PHAE6.120e-1179.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G795_ECTSI6.120e-1177.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11528contigL-elsbetiae_contig11528:5060..5200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog2880.D7G795
KEGG koko:K03507,ko:K10728
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein localization to site of double-strand break
EggNOG OGsKOG1929@1,KOG1929@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko03400
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.3891566-CDS-L-elsbetiae_contig11528:5059..52001622815359.3891566-CDS-L-elsbetiae_contig11528:5059..5200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11528 5060..5200 +
1691682859.60008-CDS-L-elsbetiae_contig11528:5059..52001691682859.60008-CDS-L-elsbetiae_contig11528:5059..5200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11528 5060..5200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11528.1339.1prot_L-elsbetiae_contig11528.1339.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11528 5060..5200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11528.1339.1

>prot_L-elsbetiae_contig11528.1339.1 ID=prot_L-elsbetiae_contig11528.1339.1|Name=mRNA_L-elsbetiae_contig11528.1339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp
WTAVSQDGLREKVVAMGGSFDVNLTTSTTHLVAASSETEKYRVATRM
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mRNA from alignment at L-elsbetiae_contig11528:5060..5200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11528.1339.1 ID=mRNA_L-elsbetiae_contig11528.1339.1|Name=mRNA_L-elsbetiae_contig11528.1339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=141bp|location=Sequence derived from alignment at L-elsbetiae_contig11528:5060..5200+ (Laminarionema elsbetiae ELsaHSoW15)
TGGACTGCCGTGTCGCAGGATGGCCTGAGGGAGAAGGTCGTTGCCATGGG
CGGCAGCTTTGACGTGAACCTCACCACCAGCACCACGCACCTCGTGGCGG
CCTCTTCCGAGACGGAAAAGTACAGGGTGGCCACCAGAATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11528:5060..5200+

>mRNA_L-elsbetiae_contig11528.1339.1 ID=mRNA_L-elsbetiae_contig11528.1339.1|Name=mRNA_L-elsbetiae_contig11528.1339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig11528:5060..5200+ (Laminarionema elsbetiae ELsaHSoW15)
TGGACTGCCGTGTCGCAGGATGGCCTGAGGGAGAAGGTCGTTGCCATGGG
CGGCAGCTTTGACGTGAACCTCACCACCAGCACCACGCACCTCGTGGCGG
CCTCTTCCGAGACGGAAAAGTACAGGGTGGCCACCAGAATGTGGACTGCC
GTGTCGCAGGATGGCCTGAGGGAGAAGGTCGTTGCCATGGGCGGCAGCTT
TGACGTGAACCTCACCACCAGCACCACGCACCTCGTGGCGGCCTCTTCCG
AGACGGAAAAGTACAGGGTGGCCACCAGAATG
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