mRNA_L-elsbetiae_contig11504.1323.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11504.1323.1
Unique NamemRNA_L-elsbetiae_contig11504.1323.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11504.1323.1 vs. uniprot
Match: D8LSP7_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP7_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.050e-78
Identity = 155/274 (56.57%), Postives = 187/274 (68.25%), Query Frame = 1 
Query:    1 SVTSLNLENGSA-PSPGLKAALA-AEREEGFAVVLFTEAGKASPVLRVLANEVKGRVSAVQARLPKRTASSXXXXXXXXXAEKMLKGLLEGVIDVQGTVDSVPALVLVDKLSGKGTVFDGAVDDAKAMLDFVRDGAGISAXXXXXXXXXXXXXXXXERSSSASSNEIGGLLRLDPGLLAALEEKGTEALVVAFVEGGDVDDSVIPGWAGATKSLQGEIRAAVFDCGAHPEECSKSKGSGSSKGAKAPHIRVYPHGSGVDGDKRGFPTVLRASEV 816
            SV S++LE  S+ PS  LK ALA  + EE FA +LFTEAGKASPVLRVLAN+V+G+VSAVQARL K   +           ++ L G+L+G +D+ GT+ SVP LVL++K SG+G+V+ GAVDDAKAML FVRDGAGIS+                      ++   GG+L LDP LL+ LEEKGTEALV AFVEGGDVD   IPGWA ATK LQGEIRA V DC AHP +C      GS+K  K P ++VYPHG GVDGDKRGFP+VL A+ V
Sbjct:  168 SVVSVDLEKSSSGPSTSLKEALAEGDGEEAFAAILFTEAGKASPVLRVLANQVRGKVSAVQARLAKGPTTPDDEDDEDVAQDEALAGMLKGTVDIPGTIPSVPFLVLLNKESGEGSVYGGAVDDAKAMLAFVRDGAGISSATEAGGAGASTSGSDGGGDRKGTT---GGVLELDPELLSVLEEKGTEALVAAFVEGGDVDS--IPGWAEATKGLQGEIRAGVLDCTAHPAQCE-----GSAK-QKMPFLKVYPHGKGVDGDKRGFPSVLPATGV 430
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11504.1323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSP7_ECTSI4.050e-7856.57Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11504contigL-elsbetiae_contig11504:978..5475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size816
Cds size816
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11504.1323.1prot_L-elsbetiae_contig11504.1323.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11504 978..5475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.83709-CDS-L-elsbetiae_contig11504:977..11481622815357.83709-CDS-L-elsbetiae_contig11504:977..1148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 978..1148 -
1691682858.7023168-CDS-L-elsbetiae_contig11504:977..11481691682858.7023168-CDS-L-elsbetiae_contig11504:977..1148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 978..1148 -
1622815357.8499727-CDS-L-elsbetiae_contig11504:2667..29401622815357.8499727-CDS-L-elsbetiae_contig11504:2667..2940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 2668..2940 -
1691682858.7138426-CDS-L-elsbetiae_contig11504:2667..29401691682858.7138426-CDS-L-elsbetiae_contig11504:2667..2940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 2668..2940 -
1622815357.8594375-CDS-L-elsbetiae_contig11504:3669..37871622815357.8594375-CDS-L-elsbetiae_contig11504:3669..3787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 3670..3787 -
1691682858.7234871-CDS-L-elsbetiae_contig11504:3669..37871691682858.7234871-CDS-L-elsbetiae_contig11504:3669..3787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 3670..3787 -
1622815357.870789-CDS-L-elsbetiae_contig11504:4186..42111622815357.870789-CDS-L-elsbetiae_contig11504:4186..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 4187..4211 -
1691682858.7316043-CDS-L-elsbetiae_contig11504:4186..42111691682858.7316043-CDS-L-elsbetiae_contig11504:4186..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 4187..4211 -
1622815357.87978-CDS-L-elsbetiae_contig11504:4361..44771622815357.87978-CDS-L-elsbetiae_contig11504:4361..4477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 4362..4477 -
1691682858.7398925-CDS-L-elsbetiae_contig11504:4361..44771691682858.7398925-CDS-L-elsbetiae_contig11504:4361..4477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 4362..4477 -
1622815357.8891048-CDS-L-elsbetiae_contig11504:5362..54751622815357.8891048-CDS-L-elsbetiae_contig11504:5362..5475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 5363..5475 -
1691682858.7505543-CDS-L-elsbetiae_contig11504:5362..54751691682858.7505543-CDS-L-elsbetiae_contig11504:5362..5475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11504 5363..5475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11504.1323.1

>prot_L-elsbetiae_contig11504.1323.1 ID=prot_L-elsbetiae_contig11504.1323.1|Name=mRNA_L-elsbetiae_contig11504.1323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
SVTSLNLENGSAPSPGLKAALAAEREEGFAVVLFTEAGKASPVLRVLANE
VKGRVSAVQARLPKRTASSSSSSSSSQAAEKMLKGLLEGVIDVQGTVDSV
PALVLVDKLSGKGTVFDGAVDDAKAMLDFVRDGAGISASASASAFNTDTE
SGGGERSSSASSNEIGGLLRLDPGLLAALEEKGTEALVVAFVEGGDVDDS
VIPGWAGATKSLQGEIRAAVFDCGAHPEECSKSKGSGSSKGAKAPHIRVY
PHGSGVDGDKRGFPTVLRASEV
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mRNA from alignment at L-elsbetiae_contig11504:978..5475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11504.1323.1 ID=mRNA_L-elsbetiae_contig11504.1323.1|Name=mRNA_L-elsbetiae_contig11504.1323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4498bp|location=Sequence derived from alignment at L-elsbetiae_contig11504:978..5475- (Laminarionema elsbetiae ELsaHSoW15)
TCGGTGACGTCATTGAACCTCGAGAACGGGTCGGCCCCGTCTCCCGGCCT
CAAGGCGGCCCTCGCGGCGGAGAGAGAGGAGGGCTTCGCGGTGGTTCTGT
TCACGGAGGCAGGGTGAGGCTAGGCTCCGCTAAAAAGCGCACGTATACCG
TGTACCACGACACAAGATAACACACCCCCCTGGACCGATTTTGAAACCTC
GGTTGGTACTCCGCAACGAAAGTATGATTCTGTGTAGTACCGAACGACAC
GTTTTTGGACAGCCTAATACGTAGCCCTTTTTTGATGGCATATTTCCAAC
GCCAGTCCTTTTCGGGACTGACAGTCTTTTCTTCTCGCTGTGAAGTATAT
TAATCTTGAGCTTTGAAAATCGATCGGGTGTGTGTGTTATCTTGTGTCGT
CGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTTCTTCA
CATTAGCTCGTATAATCGAGATTGCTACATAATTCCAAAAATCTAACAAC
TCACGGCCCGTGGCCGCAGAAGTGCTAGAGCCATCAAAAGATCCGAAAAA
TGACATGCGTAGATCCACCGGGTAAGGATACACAAGGCCGAGGAGGTACA
CCTATGAATATGCCGGTAAAAAAACATATATATACGGTACGTGCTTCTAT
GTACGTATGTGCATAGGTATTCGCGCAGACCCTTTGGGTACACGCGCACG
TGTGCGCTTGGGTGGCGCAGAGATGACGCGACTTTTGATTTTTTGTATTT
TAGTTTTTGTCTGTAATATACGTCTTGTTTTTGTTGTTGTCTTCACATTA
AAAACCGTTCCGATCTCTCTCTTATCCAGTACACCTCTACGAGCCCGTAC
CAATCCAACGCTGACGCGGTCAATTCAAATCCCGTGCTCACAGGATAACT
CACCTACCCTAAAAAGGGTATTCTGAAAAATGAAATTGTCTATGTACAGG
TATACTTTTGTGATGGAAAAAATGCAAAACAAATGCTCCCCCCTCCAGGA
AAGCGTCGCCGGTCCTCCGCGTGCTGGCCAACGAGGTGAAGGGCAGGGTG
TCCGCGGTGCAGGCGCGTCTGCCGAAGCGGACTGCCTCCTCCTCCTCCTC
CTCTTCCTCCTCCCGTTCCTCCTCCTCTTCCTCCTCCTCTTCTTCCTCCT
CCTCCTCTTCCTCCTCCTCTTCCTCCCGGTCTTCCCCCCCCTCTTCCTCC
GCCTCTTCCTCTTCCTCTTCCGGCGATGAACATCATGAGCACCATGAGAG
TAACGGAGGGCAAGAGGCCGCGGAAAAGATGCTGAAAGGGTGAGAGAGAC
AGGGATTGGGGGGGGGGGTAGAGAGGGGAGGGGAGAGGGGGACAGATTTT
GGTGACGTGATGGTGATGGTGGTGATGGTCTGGGAGGTCCCATGCAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGGGAGGGAAAGA
GTGATAAGGTTTGGTATCTTGATGACGATAACACTCTGCGAGATCCTGTT
AATTCTCAGTTTCTTGCTTCCCTATATGCGGACCCCCCGGCCTTGTCCTG
CCGTCTCCGTCGTGTTTTTGCGGCTTCGTTATATGTGGTGAGCGTTTTAT
CATTCAAGCTGTGACTGATTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCT
GCCGCTGCCCCGCCGCCATCCCCGCTTCCGGCGAAAAGTCTGCTGGAAGG
CGTCATTGATGTCCAGGGGACGGTCGATTCTGTCCCCGCCCTGGTGCTGG
TGGACAAGCTGTCCGGGAAGGGGACCGTGTTCGATGGAGCTGTCGACGAC
GCCAAGGTGAGAAGAGAAGATACCGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGCACGGAAGAGAGAGAGAGAGATA
CGTGAAGGATGAAGGGAGCTAGAGAGCTAGAGGAGGCGAAATAGATCCGC
GACTCTCTTTCGCAGACGGTAGGAGTGCCGGGTCGTGGTTTGCTTGGCGG
GCCGCCACCGAATCAGAAGAGATCCCCCCCTGGTGTTGGCGACGTATGTA
TGATGTATGTGTCGTACTCATCAGAGCTGCAATGTATGTGAGAGCCTTTA
CATATAGTGTGTGCAATATTGGATCTGTTTGTTTGCTTTGGCGGACCACC
ACCTGACCCCACCCAACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGACCCTGGCGTACGTACGTCAACATACACACAT
ACTTATCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTCTCCCCCCCGCCG
CCGCCCCCCCCCCCCCCCCCCCCCCCCCGNNNNNNNNTACGGACGTAAAA
ACACCCACCTCCTTACCACCCCCCCCCCCCCCCCCCCCCCCCGCTAACGC
CGGCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAGGCGATGCTTGATTTC
GTCCGCGACGGCGCCGGCATCTCTGCCTCCGCCTCCGCCTCCGCCTTCAA
CACCGACACCGAAAGCGGCGGCGGCGAGCGGTCCAGCAGCGCCAGCAGTA
ATGAGATTGGGGGCCTGCTGAGGCTCGACCCGGGGCTGCTGGCGGCGCTG
GAGGAGAAGGGCACGGAGGCCCTGGTGGTGGCGTTCGTGGAAGGGGGGGA
CGTGGATGATTCTGTCATCCCCGGGTGGGCGGGTGCCACCAAGTCTCTCC
AGGGCGAGGTGCGCTCTCGGTGTTTGCATGGCGTATGGCATATGGAACCC
TTTGGTATCCGTGTTTTGGGTTGATTTTGTTCGCTGCGAGAATGGATCCC
ATCCGCATTATGTACCATCTCATTTCGGTAAAGACTATTTTTATTTGTCT
TCACTACAATATCCATCTTGAATAATTGTTTCATACACATACGCATGCAC
CAGACGTATTTATTTATGCCTCAGATTGATGCAATAACTTTGTTTTTTCT
AACCGTTTGTTTGTTGGTTGATTACCATCGTTTTTGCTCTTCGTGTTCAT
TTAGACCTGTACACGCCATGTAGATATATATATATATATATATTTTTTTT
TTTTTCTGTACACGCCATGGTCGCAATTATTCGACTCGCAAAACAAGTTC
AGAACTCAGATCCAGGGAGGTGTATCCCGCTACATCCTGCTGTGTTTTTT
TGATCCGAGTGTGATCGGATGGCCTCCAAGGCATTTCCAGATCGAGGGGC
GCTTTTTGTGTACGAAGTATGTATTTACCGTAGGTGACACAAGATACCAC
ACCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCCCGCAAGAAGAGTG
CCAGTGCCGAAAAGGGTGGCGCTGGAAAGATCTATACAAGGGCTGTCCGA
ATATGTGTCGTTTGGTGCTGGCACATTCTTCGTTACGGGGTAATGGAGCT
CTAAAATTCGGTCCAGGGGGTGCGGTATCTTGTGTCACCTACGGTATGCA
TGTGGTGCCCCCTAGTATAATATCTACAGCAGTGGTATTGCTTTTGGTTT
GGTCTGCTCTTGGTCTTTTGAGAATTGAGAAACCATTCACAATGGAGCGC
GGGAAGCGTTCGCGCTCGATTTTGTTTCAGGGATGATTTATTTCACCCCC
ATTTTACAAATTTCATGCTTATATAGGTAGAGCGTTTTTTTTCCGGAGGT
GATTTACTATGTTTATTTTTTGGGCCTTATTTTTTCATCCGATCGTTACG
TGAGTAGGCTTCACGATACCTCGGGGTCCCGTGTTTGGAAATATGCCGTA
TCGTCCGAATTTATACGGAGCTCCTTGGCTGACCCCAATCTGTGTTGGTT
TGGGTTTTGCACTACATACATCCCGGTTGAAATGAAGCTGTTTCGGCCAC
TGTGGACATCGATATGCACGTACGTGCCGTAGGTTACAGAAGATACCACA
CCCCCCTGGAGCGACTTTTAGAGCTCCAACACTCCGTAACGAAGAGGGTG
CCAGCACCGAACGACACTCTTTCGGACAGCCCTCGACGAGATCTTTCCAA
CGCCACCCACCCCATTTCGGCACTGGCACTCTTCCTCTTGCTGGGGAGGA
GTCGATCCTTGAAAACCCGCCCAGGGGGTTGGGGGGGGGGGGGGTTGTAT
CTTGTGTCACCTACGGTGTAAATACATACAAGCATGCACCACCAGCGAAA
GGCGAGCTTTGTTTTCGATTCTCCTCGCCGATTCCGCTGCTCCCGGCGAC
GCACGGCGACCCACCCGCACACGACAGATCCGCGCGGCTGTGTTCGACTG
CGGTGCCCACCCGGAGGAGTGCAGCAAGAGCAAGGGGTCGGGCTCCTCCA
AGGGCGCCAAGGCGCCGCACATCCGGGTGTACCCTCACGGGAGCGGGGTC
GACGGGGACAAGAGGGGCTTCCCCACGGTGCTACGGGCGTCAGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11504:978..5475-

>mRNA_L-elsbetiae_contig11504.1323.1 ID=mRNA_L-elsbetiae_contig11504.1323.1|Name=mRNA_L-elsbetiae_contig11504.1323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig11504:978..5475- (Laminarionema elsbetiae ELsaHSoW15)
TCGGTGACGTCATTGAACCTCGAGAACGGGTCGGCCCCGTCTCCCGGCCT
CAAGGCGGCCCTCGCGGCGGAGAGAGAGGAGGGCTTCGCGGTGGTTCTGT
TCACGGAGGCAGGTCGGTGACGTCATTGAACCTCGAGAACGGGTCGGCCC
CGTCTCCCGGCCTCAAGGCGGCCCTCGCGGCGGAGAGAGAGGAGGGCTTC
GCGGTGGTTCTGTTCACGGAGGCAGGGAAAGCGTCGCCGGTCCTCCGCGT
GCTGGCCAACGAGGTGAAGGGCAGGGTGTCCGCGGTGCAGGCGCGTCTGC
CGAAGCGGACTGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCCGAAAGCGT
CGCCGGTCCTCCGCGTGCTGGCCAACGAGGTGAAGGGCAGGGTGTCCGCG
GTGCAGGCGCGTCTGCCGAAGCGGACTGCCTCCTCCTCCTCCTCCTCTTC
CTCCTCCCAGGCCGCGGAAAAGATGCTGAAAGGAGGCCGCGGAAAAGATG
CTGAAAGGTCTGCTGGAAGGCGTCATTGATGTCCAGGGGACGGTCGATTC
TGTCCCCGCCCTGGTGCTGGTGGACAAGCTGTCCGGGAAGGGGACCGTGT
TCGATGGAGCTGTCGACGACGCCAAGTCTGCTGGAAGGCGTCATTGATGT
CCAGGGGACGGTCGATTCTGTCCCCGCCCTGGTGCTGGTGGACAAGCTGT
CCGGGAAGGGGACCGTGTTCGATGGAGCTGTCGACGACGCCAAGGCGATG
CTTGATTTCGTCCGCGACGGCGCCGGCATCTCTGCCTCCGCCTCCGCCTC
CGCCTTCAACACCGACACCGAAAGCGGCGGCGGCGAGCGGTCCAGCAGCG
CCAGCAGTAATGAGATTGGGGGCCTGCTGAGGCTCGACCCGGGGCTGCTG
GCGGCGCTGGAGGAGAAGGGCACGGAGGCCCTGGTGGTGGCGTTCGTGGA
AGGGGGGGACGTGGATGATTCTGTCATCCCCGGGTGGGCGGGTGCCACCA
AGTCTCTCCAGGGCGAGGCGATGCTTGATTTCGTCCGCGACGGCGCCGGC
ATCTCTGCCTCCGCCTCCGCCTCCGCCTTCAACACCGACACCGAAAGCGG
CGGCGGCGAGCGGTCCAGCAGCGCCAGCAGTAATGAGATTGGGGGCCTGC
TGAGGCTCGACCCGGGGCTGCTGGCGGCGCTGGAGGAGAAGGGCACGGAG
GCCCTGGTGGTGGCGTTCGTGGAAGGGGGGGACGTGGATGATTCTGTCAT
CCCCGGGTGGGCGGGTGCCACCAAGTCTCTCCAGGGCGAGATCCGCGCGG
CTGTGTTCGACTGCGGTGCCCACCCGGAGGAGTGCAGCAAGAGCAAGGGG
TCGGGCTCCTCCAAGGGCGCCAAGGCGCCGCACATCCGGGTGTACCCTCA
CGGGAGCGGGGTCGACGGGGACAAGAGGGGCTTCCCCACGGTGCTACGGG
CGTCAGAGGTGATCCGCGCGGCTGTGTTCGACTGCGGTGCCCACCCGGAG
GAGTGCAGCAAGAGCAAGGGGTCGGGCTCCTCCAAGGGCGCCAAGGCGCC
GCACATCCGGGTGTACCCTCACGGGAGCGGGGTCGACGGGGACAAGAGGG
GCTTCCCCACGGTGCTACGGGCGTCAGAGGTG
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