mRNA_L-elsbetiae_contig11483.1303.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11483.1303.1
Unique NamemRNA_L-elsbetiae_contig11483.1303.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.880e-37
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    4 ASKPTYNVMVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            ++KPTYN MVF+AIKTLKER+GSSIQAIKKSITATYP+LNFTPHQMRSALKKGVESGKFIK+K SYKLS EAKKPA
Sbjct:    3 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 78
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BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 7.620e-37
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    7 SKPTYNVMVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            +KPTYNVMVF+AIKTLKER+GSSIQAIKKSITATYP+LNFTPHQMR ALKKGVESGKFIK+K SYKLSPEAKKPA
Sbjct:   97 AKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPA 171
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BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.860e-34
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    7 SKPTYNVMVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            +KPTY+VMVF+AIK LKER GSS+ A+KK I ATYPSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:    5 AKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.710e-32
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   28 MVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            MVF+AIKTLKER+GSSIQAIKKSITATYP+LNFTPHQMRSALKKGVESGKF+K+K SYKLS EAKKPA
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 68
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BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.460e-31
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:   28 MVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 228
            MVF+AIK+LKER+GSSIQAIKKSITATYP+LNFTPHQMRSALKKGVE+GKFIKVK SYKLS EAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
[Close]
BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.760e-30
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   28 MVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            MVF+AIK LKER GSS+ A+KK I ATYPSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
[Close]
BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.940e-25
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   28 MVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSP 213
            MVF+AIKTLKER+GSSIQA+KKSITATYP+L+FTPHQMRSALKKGVE+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
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BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.770e-24
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   13 PTYNVMVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 228
            PTY+ M   AI  LKER+GSS+ AIKK I ATYP+LNF PHQ+R ALKKG E+G FIKVK SYK+SPEAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.540e-23
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   13 PTYNVMVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            PTY+ M  EA+K LKER+GSS+ AIKK ITA+YPSL FT H MRSALKKGVESGKFIKVK SYKLS   ++PA
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPA 74
[Close]
BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.920e-21
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   13 PTYNVMVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLS 210
            PTY+ M  EA+K LKER+GSS+ AIKK ITA+YPSL FT H +RSALKKGVESGKFIKVK SYKLS
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11483.1303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI2.880e-3788.16Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE7.620e-3790.67H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI2.860e-3484.00H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KST0_9PHAE4.710e-3289.71H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI9.460e-3189.55H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE3.760e-3085.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE4.940e-2580.65H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI1.770e-2470.83H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI2.540e-2372.60H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.920e-2175.76H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11483contigL-elsbetiae_contig11483:3967..5779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue2e-29
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size474
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11483.1303.1prot_L-elsbetiae_contig11483.1303.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11483 3967..5779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815354.6082256-CDS-L-elsbetiae_contig11483:3966..42541622815354.6082256-CDS-L-elsbetiae_contig11483:3966..4254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11483 3967..4254 -
1691682857.1142535-CDS-L-elsbetiae_contig11483:3966..42541691682857.1142535-CDS-L-elsbetiae_contig11483:3966..4254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11483 3967..4254 -
1622815354.625005-CDS-L-elsbetiae_contig11483:5021..51801622815354.625005-CDS-L-elsbetiae_contig11483:5021..5180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11483 5022..5180 -
1691682857.1281269-CDS-L-elsbetiae_contig11483:5021..51801691682857.1281269-CDS-L-elsbetiae_contig11483:5021..5180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11483 5022..5180 -
1622815354.6408489-CDS-L-elsbetiae_contig11483:5752..57791622815354.6408489-CDS-L-elsbetiae_contig11483:5752..5779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11483 5753..5779 -
1691682857.1379266-CDS-L-elsbetiae_contig11483:5752..57791691682857.1379266-CDS-L-elsbetiae_contig11483:5752..5779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11483 5753..5779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11483.1303.1

>prot_L-elsbetiae_contig11483.1303.1 ID=prot_L-elsbetiae_contig11483.1303.1|Name=mRNA_L-elsbetiae_contig11483.1303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MASKPTYNVMVFEAIKTLKERSGSSIQAIKKSITATYPSLNFTPHQMRSA
LKKGVESGKFIKVKGSYKLSPEAKKPAPKPKKKVVKKVVKKVVKKKVVRK
VAKKPAAKKPTAKKASTPKKAAPKKTAAKKTVTKKPAKKASTPKKKAAPK
KKTAKKA*
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mRNA from alignment at L-elsbetiae_contig11483:3967..5779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11483.1303.1 ID=mRNA_L-elsbetiae_contig11483.1303.1|Name=mRNA_L-elsbetiae_contig11483.1303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1813bp|location=Sequence derived from alignment at L-elsbetiae_contig11483:3967..5779- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCAAGCCCACCTACAACGTGGTGAGTAGGCCGATTCTCTCTGC
GTGTATATCTACCACGTGCTAACTGCACATGTTGTGCTTCTCACCATCGT
CGGCGTGACTAGAATTAACTTCTGATAGGATAATTTTTCGCGCATCCCCG
TGTGGTCGTCTGGTGCTCTGCTCTGTTCCTGCATATGTCAATACCGCTAG
ATGCTCTATGTACAGCAGCTTCAGGTGCAATGTCCTTTCGTAGAGGACAC
AAAACACAGCAGTAGGTACACGCCACCTGCGATATGACAAGGCGTTGTCT
AATGCGCAAAAGTGGTATCGTGCCGTGCGCGTCAAATAACCCGCGGATAG
CCACGGGATCGGCCATGCCGTGTCCGAGAGCACGCGTGCGTTGTGCCCTA
CGGATACATGCTTGTACATACATACATGTAGTCGAGCATCCAAGTAATGG
CATGCTGCTTGAAGGGTGTTTTGCCGTCTAGTTCGAACGCCTCTCTGCTC
TCCCTTCGGGCCTTCCAAACTCATTGACACTTGACACCCCTACTACTGCT
GTGTTTTCGCCCGTTTCTTCGTGCTTCTTCCTCTGTTAACCACTGGCAGA
TGGTATTTGAGGCCATCAAGACGCTCAAGGAGAGGAGCGGGTCGTCCATC
CAGGCCATCAAGAAGAGCATCACCGCCACCTACCCGTCCCTTAACTTCAC
GCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGAGTCGAGTCCGGCAAGT
TCATCAAGGTGAGTCACCAGCTTGCTGCTTGCTGCTTGCTGCTCCACGTT
CTCCAGAATACCGCCGTATCGGAAGTCGGACGAAATGGGGCCTTTGACGC
ACACAAAGAGCAGTCGCTATTATTGCATCGGAACCCCGAGGACAACAGTA
TGATTTCGAACTCGTGTTTGTGCTCTTTATTGCACTTCAGTATCAAGCTG
CTGTTCAAACTTTGTGTTTATTTTCTCTTCGAAAGATCAACGGCATTGTT
CTGCACTGGAATGCAATCTGCTGTCTGTGAGCTAGACTGGGTGCACATCA
AAACCTCGTGAGTTGTATAGGTGGCAATACTGCTGTTTTGCGCATGGCGT
GTTTGTCATATGTGGGGAACATTTTAACATGTGTACATGCCTATGTACCG
CGGAAAGGGAGTGTGTTTTGGTGTCGGTACTAAAATCATGCGAGTCATCG
CACAGCAGAGGTGCGGTAGATTTTACTGAGCTGATATCTCGACAACGGGG
CGCCAATGCAGAAAAGCAACCCACCAGGGAAATTTTAATATTGCTGAGGC
TTTTCCGAAAGCCTTTTTTTGAAGATCGGCACTCTCTCTGTTTCCGAGAT
ATCGAGGTCGTCGGCTCGGGAAATCTACCGCACCCCCGTGCGATGACTCG
CATGATTACAAAACGATTTTCCAGTTTAGCTGACGTTGACGCACAAATGT
CCTGAACTGACAGCATTGTCCACCGCGCCAATGTCTCTTATTCCCTTCCC
TAATGATGATGTTCGCACACACCAGGTGAAAGGCTCCTATAAGCTCAGCC
CCGAGGCCAAGAAGCCCGCCCCCAAGCCCAAGAAGAAGGTTGTGAAGAAA
GTCGTCAAGAAGGTGGTCAAGAAGAAGGTGGTCAGGAAGGTGGCCAAGAA
GCCCGCTGCTAAGAAGCCCACTGCCAAGAAGGCGTCCACCCCGAAGAAGG
CCGCTCCCAAGAAGACTGCCGCCAAGAAGACCGTCACCAAGAAGCCCGCC
AAGAAGGCCTCCACCCCTAAGAAGAAGGCCGCTCCCAAGAAGAAGACTGC
CAAGAAGGCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11483:3967..5779-

>mRNA_L-elsbetiae_contig11483.1303.1 ID=mRNA_L-elsbetiae_contig11483.1303.1|Name=mRNA_L-elsbetiae_contig11483.1303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig11483:3967..5779- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCAAGCCCACCTACAACGTGATGGCGTCCAAGCCCACCTACAA
CGTGATGGTATTTGAGGCCATCAAGACGCTCAAGGAGAGGAGCGGGTCGT
CCATCCAGGCCATCAAGAAGAGCATCACCGCCACCTACCCGTCCCTTAAC
TTCACGCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGAGTCGAGTCCGG
CAAGTTCATCAAGATGGTATTTGAGGCCATCAAGACGCTCAAGGAGAGGA
GCGGGTCGTCCATCCAGGCCATCAAGAAGAGCATCACCGCCACCTACCCG
TCCCTTAACTTCACGCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGAGT
CGAGTCCGGCAAGTTCATCAAGGTGAAAGGCTCCTATAAGCTCAGCCCCG
AGGCCAAGAAGCCCGCCCCCAAGCCCAAGAAGAAGGTTGTGAAGAAAGTC
GTCAAGAAGGTGGTCAAGAAGAAGGTGGTCAGGAAGGTGGCCAAGAAGCC
CGCTGCTAAGAAGCCCACTGCCAAGAAGGCGTCCACCCCGAAGAAGGCCG
CTCCCAAGAAGACTGCCGCCAAGAAGACCGTCACCAAGAAGCCCGCCAAG
AAGGCCTCCACCCCTAAGAAGAAGGCCGCTCCCAAGAAGAAGACTGCCAA
GAAGGCCTAAGTGAAAGGCTCCTATAAGCTCAGCCCCGAGGCCAAGAAGC
CCGCCCCCAAGCCCAAGAAGAAGGTTGTGAAGAAAGTCGTCAAGAAGGTG
GTCAAGAAGAAGGTGGTCAGGAAGGTGGCCAAGAAGCCCGCTGCTAAGAA
GCCCACTGCCAAGAAGGCGTCCACCCCGAAGAAGGCCGCTCCCAAGAAGA
CTGCCGCCAAGAAGACCGTCACCAAGAAGCCCGCCAAGAAGGCCTCCACC
CCTAAGAAGAAGGCCGCTCCCAAGAAGAAGACTGCCAAGAAGGCCTAA
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