mRNA_L-elsbetiae_contig11481.1302.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Match: D7FY04_ECTSI (Putative regulatory protein cII n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY04_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 2.560e-152 Identity = 216/318 (67.92%), Postives = 254/318 (79.87%), Query Frame = 1 Query: 1 QVPGRPHMKNNLKDALAPVLQFAGGGGPLGQWGPADVSKIGLPDGCGDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIGSALNEISAIIHGMLALEGMAGTRGEPDTQPSILVRVPDFNQLAALSHYYGLPVIALGPPLMGIWDAQTELMIPFSGIIRREQSKKVLNFQRIFKGLLQNIGSKVVNGPFVVDFDD 954 QVPGRP+MKNN+KDAL PVL+ AG P+ QWGPADV+KI LP+GC G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC PDTY HNAIKALP IM D + TR +ARN A+H LA DVQIP NPRILG+SV RYT ++S+PA+NF +WM RI S L EIS +H + L GMAGT G+PDT PSIL +VP+FNQ +ALSH+YGLPVIALG LM +WD + M F+G RR+ +KKV+ FQ +FK L+ IG KV +GP +V D+ Sbjct: 107 QVPGRPNMKNNIKDALRPVLEPAGSDSPMVQWGPADVTKIPLPEGC-QGGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPDTYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIESQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMSVWDEEHAAMRTFTGNPRRDMNKKVIFFQEVFKKFLEEIGRKVQSGPLLVALDE 423
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Match: D7FY09_ECTSI (Putative regulatory protein cII n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY09_ECTSI) HSP 1 Score: 438 bits (1127), Expect = 3.750e-145 Identity = 215/322 (66.77%), Postives = 256/322 (79.50%), Query Frame = 1 Query: 1 QVPGRPHMKNNLKDALAPVLQFAGGGGPLGQWGPADVSKIGLPDGCGDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIGSALNEISAIIHGMLALEGMAGTRGEPDTQPSILVRVPDFNQLAALSHYYGLPVIALGPPLMGIWDAQTELMIPFSGIIRREQSKKVLNFQRIFKGLLQNIGSKVVNGPFVVDFD--DDV 960 QVPGRP+MKNN+KDAL PVL+ AG P+ QWGPADV+KI LP+GC G LFLLPGHEG+VDY+QKVTVAYGTNL+VEA APGAWNKLMALTAR CGADIVLVDC+PHRGKLNMHIILTSDYLF+PC P+TY HNAIKALP IM D + TR +ARN A+H LA DVQIP NPRILG+SV RYT ++S+PA+NF +WM RI + L EIS +H + L GMAGT G+PDT PSIL +VP+FNQ +ALSH+YGLPVIALG LMG+W+ + + F+G RR+ +KKV+ FQ +FK L+ IG K +GP +V D DDV Sbjct: 109 QVPGRPNMKNNIKDALRPVLEPAGSDSPMVQWGPADVTKIPLPEGC-QGGLFLLPGHEGLVDYEQKVTVAYGTNLLVEAIAPGAWNKLMALTARSCGADIVLVDCNPHRGKLNMHIILTSDYLFLPCTPETYCHNAIKALPFIMADWVTTRFNARNTASHAGLARDVQIPKDNPRILGISVNRYTHIRSKPAKNFRYWMTRIENQLREISQDMHKIQGLAGMAGTPGQPDTWPSILAKVPEFNQFSALSHFYGLPVIALGANLMGVWNEEHAEVQKFTGNPRRDMNKKVIFFQGVFKKFLEEIGRKGQSGPLLVALDEIDDV 429
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Match: UPI00156D48D6 (AAA family ATPase n=1 Tax=Dorea formicigenerans TaxID=39486 RepID=UPI00156D48D6) HSP 1 Score: 102 bits (253), Expect = 4.290e-21 Identity = 79/255 (30.98%), Postives = 117/255 (45.88%), Query Frame = 1 Query: 28 NNLKDALAPVLQFAGGGGPLGQWGPADVSKIGLPDGCGDGALFLLPGHEGIVDYDQKVTVAY----GTNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIGSALN-EISAIIHGMLALEGMAGTRGEPDTQPSILVRVPDFNQLAALSHYYGLPVIAL 777 +N+K AL PVL GG L A + + LFLLPGH ++D +A NLM PGA+ K++ LTA++ DIVLVD SP N +I++ SDY VPCAPD + + AI +L I IT ++N +A ++ P LG+ RY P + FA W+ I ++ ++ ++ L G+ ++ L + DFN L A S + +PV L Sbjct: 66 SNIKSALDPVL-----GGTLEPLTAAKCVEFENNEN-----LFLLPGHVQFAEFDTTYNIAETMTGSLNLMKNV--PGAFRKMLELTAKEYKIDIVLVDMSPSISATNSNILMQSDYFIVPCAPDYFCYMAINSLLTIFPKWEITYKKMQDNDVFQ--SATYKMKNTPPIFLGILHQRYRPRNGSPVKAFAEWINDINDLVDSKLVPVLREHNMLPKQLGSNNYEESYN--LCNIADFNSLIAQSQEHNVPVFLL 304
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Match: A0A1C0VAW4_9CYAN (AAA_31 domain-containing protein n=1 Tax=Limnothrix sp. P13C2 TaxID=1880902 RepID=A0A1C0VAW4_9CYAN) HSP 1 Score: 92.0 bits (227), Expect = 1.900e-17 Identity = 84/301 (27.91%), Postives = 134/301 (44.52%), Query Frame = 1 Query: 28 NNLKDALAPVLQFAGGGGPLGQWGPADVSKIG-LP-DGCGDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAA--PGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIGSALNE--ISAIIHGMLAL-EGMAGTRGEPDTQPSILVRVPDFNQLAALSHYYGLPVIALGPPLMGIWDAQTELMIPFSGIIRREQSKKVLNFQRIFKGLLQNI 909 +N+K LAP + P + I +P +GC + LFLLPGH +Y+ + A + ++A PGA N L+ TA K AD +L+D S G +N +++ SD+ +P D +S AI +L ++ A + E A PA + LGV + + + F W+ +I A++E I A+ + L + + +G D L ++P+FN L ALS + PV L P +G QT GI+ + KK F+++F L I Sbjct: 69 SNIKTGLAPAFESQ----------PRAIEAIDCVPVEGCQN--LFLLPGHLSFAEYEVALGFAQELSGSIQALRNIPGAINDLLDKTAEKFNADYILIDMSSSLGAINQNLLAISDFFLIPTTADFFSIMAIDSLVKVLPRWYAWAKVASSLQVLRE--AHYPFPATKLKFLGVIIQNNRIIHGKATTAFQNWIEKIEKAVSEQLIPALQKSNMTLPDYLYREQGVQDNLS--LAKIPNFNNLIALSQEHRTPVYDLTPEQLG----QT-------GIVLKSNQKKQEEFRQMFSDLADKI 342
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Match: UPI000D8CBAEB (AAA family ATPase n=1 Tax=Morganella morganii TaxID=582 RepID=UPI000D8CBAEB) HSP 1 Score: 66.6 bits (161), Expect = 1.050e-8 Identity = 58/226 (25.66%), Postives = 91/226 (40.27%), Query Frame = 1 Query: 217 TNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIGSAL-NEISAIIHGMLALEGMAGTRGEPDTQPSILVRVPDFNQLAALSHYYGLPVIALGPPLMGIWDAQTELMIPFSGIIRREQSKKVLNFQRIFK 891 TNLM A G + + A K D V +D P G L L D F+P APD ++ AI L I+ + + + + ++ + GNP LG V + + + WM RI + N+I II L + + SI++ +PDFNQLA L G V + + E P+ G ++ +++R+FK Sbjct: 131 TNLMRTYVAVGDF---IVRLAEKNKYDYVFIDVGPSSGALTRSFFLACDAFFIPVAPDRFNVQAISTLSHIINRWV----NEHRQVVQSYMEIELPVRPGNPAFLGCIVQAFKKFAGVAKPGYQMWMDRIPMEIDNKIKPIIDENKYLPEFE----DKTPKNSIIIEIPDFNQLAPLMQEVGKAVFNISQQDTALITKSGE---PWRGNNWSSAVGRMNSYKRLFK 342
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Match: UPI000F605B11 (AAA family ATPase n=1 Tax=Kosakonia sp. CCTCC M2018092 TaxID=2492396 RepID=UPI000F605B11) HSP 1 Score: 64.7 bits (156), Expect = 4.590e-8 Identity = 55/184 (29.89%), Postives = 75/184 (40.76%), Query Frame = 1 Query: 217 TNLMVEAAAPGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRIGSALNEISAIIHGMLALEGMAGTRGEPDTQPSILVRVPDFNQLAALSHYYGLPV 768 TNLM A G + + A K D V VD P G L L D F+P APD ++ AI L I+ D I H A L + I GNP LG V + + + WM RI E+ I ++ + + S+++++PDFNQLA L G V Sbjct: 131 TNLMRTYIAVGDF---LVRIADKHKYDYVFVDVGPSSGALTRSFFLACDAFFIPVAPDRFNVQAISTLSHII-DRWIKEH---RQAVQTYLELGLPIRHGNPAFLGCIVQAFKKFAGVAKPGYQMWMDRIPL---EVEKKIKLVIDEDKYLPEFEQKSHSQSVVIKIPDFNQLAPLMQEVGKAV 304
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Match: A0A6N7HJG8_9PSEU (AAA family ATPase n=1 Tax=Actinophytocola sp. TaxID=1872138 RepID=A0A6N7HJG8_9PSEU) HSP 1 Score: 63.2 bits (152), Expect = 1.340e-7 Identity = 53/223 (23.77%), Postives = 95/223 (42.60%), Query Frame = 1 Query: 139 GDGALFLLPGHEGIVDYDQKVTVAYGTNLMVEAAA---PGAWNKLMALTARKCGADIVLVDCSPHRGKLNMHIILTSDYLFVPCAPDTYSHNAIKALPAIMKD*IITRHSARNNATHNELAADVQIPAGNPRILGVSVMRYTQMKSQPARNFAFWMGRI-----GSALNEISAIIHGMLALEGMAGTRGEPDTQPSILVRVPDFNQLAALSHYYGLPVIALGP 783 GD L LL G + ++ ++ A+ L + A A+ +++ A AD+VLVD P G +N +++ SD++ +P APD +S ++ L + R H D+ +PAG+ ++G VM + +P + + W+ I GS L + + + P+T P L ++ + L L+ P+ AL P Sbjct: 92 GDDRLVLLAGDLELSSFEDDLSGAWPECLDGKPRAFRVMSAFWRVLNDAASSHEADVVLVDVGPSLGAINRGVLVASDHVVLPVAPDLFSLQGLRNLGPTLAG---WRSGWAERRKHGP--PDLAVPAGDMAVVGYVVMGHAVRLDRPVKAYQRWLAEIPGEFRGSVLRQATEQVPA-------------PETDPYCLAQLKHYRSLMPLAQEARKPMFALKP 296 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11481.1302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11481.1302.1 >prot_L-elsbetiae_contig11481.1302.1 ID=prot_L-elsbetiae_contig11481.1302.1|Name=mRNA_L-elsbetiae_contig11481.1302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp MKNNLKDALAPVLQFAGGGGPLGQWGPADVSKIGLPDGCGDGALFLLPGHback to top mRNA from alignment at L-elsbetiae_contig11481:2824..3787+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11481.1302.1 ID=mRNA_L-elsbetiae_contig11481.1302.1|Name=mRNA_L-elsbetiae_contig11481.1302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=964bp|location=Sequence derived from alignment at L-elsbetiae_contig11481:2824..3787+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11481:2824..3787+ >mRNA_L-elsbetiae_contig11481.1302.1 ID=mRNA_L-elsbetiae_contig11481.1302.1|Name=mRNA_L-elsbetiae_contig11481.1302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig11481:2824..3787+ (Laminarionema elsbetiae ELsaHSoW15)back to top |