mRNA_L-elsbetiae_contig11465.1287.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11465.1287.1
Unique NamemRNA_L-elsbetiae_contig11465.1287.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11465.1287.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 7.970e-75
Identity = 175/306 (57.19%), Postives = 199/306 (65.03%), Query Frame = 1 
Query:   43 SSWGSLGRGAGXXXXXXQRRQTPFPRSMN------SDKAIKLPLHVVGLQFRENNST-AWPSP-----------PAPPGQGGSPHHSPAEPHA-TPPGISGNTALEVEREPCNLHDRNAIKVLLPAPARQQPPLPPSPGGRRRCRSSSAPSRFLGYIPGRIAVLMAPLMDASP-PAARVTLKSVEHEXXXXXXXXXAGPPGPRNTLPALLEVKPLDGAGREPFSGVVAKLREAAKKEEKXXXXXXSESKAHKERLRSKQKTLLLDFGRSAGA--SSKGGAESSAASGSNKGGALLEGMAWEVLWQV 894
            SSWGSLGRGAG        RQ  F  S N      S K I LPLHVVGLQFR+N +  AW SP           P+P G+       PA P A T   I  NT LE+EREP N HDRNAIKVLLPA   Q PP P  PG +      SAPSRFLGYIPGRIAVL+AP++DASP P ARVTLK+VE E         A   G RNTLPALLEV PLDGAGREPFS ++ KLR+AA+KE+K      +E+KA+K+RLRSKQKTLLLDFGRS+GA  S  GG+   + SGS +GG +LE M WEVLWQV
Sbjct:   76 SSWGSLGRGAGRGG-----RQQRFLLSDNGRPPRGSTKIIALPLHVVGLQFRQNQTDDAWSSPRKSSATTAASSPSPHGE------QPAAPAACTNDDIGSNTVLELEREPYNSHDRNAIKVLLPAKP-QTPPPPLLPGSQ-----PSAPSRFLGYIPGRIAVLLAPVVDASPDPVARVTLKTVEEEGGE------AAGGGTRNTLPALLEVHPLDGAGREPFSSLMEKLRDAARKEDKRQHKRRNEAKANKDRLRSKQKTLLLDFGRSSGATTSKSGGSXXXSTSGSARGGTMLESMPWEVLWQV 358
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11465.1287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6K8_ECTSI7.970e-7557.19DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11465contigL-elsbetiae_contig11465:3925..6052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue1e-66
Seed eggNOG ortholog2880.D7G6K8
Preferred nameFBXO18
KEGG koko:K10300
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0000737,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006308,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010556,GO:0010558,GO:0010562,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015616,GO:0016043,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0017117,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0030674,GO:0031146,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031461,GO:0032268,GO:0032270,GO:0032392,GO:0032446,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0042623,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043142,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045738,GO:0045910,GO:0045934,GO:0045937,GO:0046483,GO:0046700,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0060542,GO:0065007,GO:0065009,GO:0070035,GO:0070647,GO:0071103,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902229,GO:1902231,GO:1902494,GO:1902531,GO:1902533,GO:1904949,GO:1990234,GO:1990518,GO:2000042,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size900
Cds size900
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815353.159772-CDS-L-elsbetiae_contig11465:3924..45931622815353.159772-CDS-L-elsbetiae_contig11465:3924..4593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11465 3925..4593 +
1691682856.2404284-CDS-L-elsbetiae_contig11465:3924..45931691682856.2404284-CDS-L-elsbetiae_contig11465:3924..4593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11465 3925..4593 +
1622815353.1721046-CDS-L-elsbetiae_contig11465:5821..60521622815353.1721046-CDS-L-elsbetiae_contig11465:5821..6052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11465 5822..6052 +
1691682856.2521229-CDS-L-elsbetiae_contig11465:5821..60521691682856.2521229-CDS-L-elsbetiae_contig11465:5821..6052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11465 5822..6052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11465.1287.1prot_L-elsbetiae_contig11465.1287.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11465 3925..6052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11465.1287.1

>prot_L-elsbetiae_contig11465.1287.1 ID=prot_L-elsbetiae_contig11465.1287.1|Name=mRNA_L-elsbetiae_contig11465.1287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp
TAELATPSSTQPPASSWGSLGRGAGGGGGGGQRRQTPFPRSMNSDKAIKL
PLHVVGLQFRENNSTAWPSPPAPPGQGGSPHHSPAEPHATPPGISGNTAL
EVEREPCNLHDRNAIKVLLPAPARQQPPLPPSPGGRRRCRSSSAPSRFLG
YIPGRIAVLMAPLMDASPPAARVTLKSVEHEEEEEKEGGGAGPPGPRNTL
PALLEVKPLDGAGREPFSGVVAKLREAAKKEEKRQQKRRSESKAHKERLR
SKQKTLLLDFGRSAGASSKGGAESSAASGSNKGGALLEGMAWEVLWQVN*
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mRNA from alignment at L-elsbetiae_contig11465:3925..6052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11465.1287.1 ID=mRNA_L-elsbetiae_contig11465.1287.1|Name=mRNA_L-elsbetiae_contig11465.1287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2128bp|location=Sequence derived from alignment at L-elsbetiae_contig11465:3925..6052+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCCGAGCTGGCCACACCATCATCAACACAACCACCGGCGTCATCATG
GGGGAGTCTCGGGCGCGGGGCAGGCGGAGGAGGAGGAGGAGGACAACGAC
GACAAACACCCTTCCCACGAAGCATGAACAGCGACAAGGCCATCAAGCTG
CCCCTCCACGTCGTCGGCCTCCAGTTCCGAGAGAACAACAGCACCGCTTG
GCCTTCACCCCCGGCGCCCCCGGGGCAGGGCGGCAGCCCACACCACAGCC
CCGCCGAGCCGCACGCAACTCCGCCCGGCATCAGCGGCAACACGGCCTTG
GAAGTCGAGCGCGAGCCGTGCAACCTCCACGACCGCAACGCTATCAAGGT
ACTCCTCCCCGCTCCTGCTCGGCAGCAGCCACCCTTGCCGCCGTCGCCGG
GTGGTCGCCGCCGCTGCCGGTCCTCCTCCGCCCCCTCGCGCTTCCTCGGT
TACATCCCCGGGAGGATCGCCGTGCTGATGGCTCCGCTGATGGATGCCTC
GCCCCCCGCGGCGCGCGTGACCCTAAAGAGCGTTGAGCACGAGGAGGAGG
AGGAGAAGGAGGGGGGGGGGGCTGGACCGCCGGGTCCCCGCAACACGCTG
CCGGCTCTGCTGGAGGTGAAACCGCTCGATGGCGCTGGCAGAGAGCCGTT
TTCAGGTGTGGTAGCCAAGGTGAGGTCGCTTTGCCTTTTTTAATTTAATG
CATACAAATGTCAGCAGTCTACGTCCAATTAATGCATACAAATGTCAGCA
ACGTGTGTGTTCTTGTAGACCGCCAAAACGCCTCTTTGGTTGGTGATGTT
TCGTCCTGCTGGGCTGTTATTCTGGAGTTTTTAACAAACAACAGTTGCTT
CTATAGAAGTGCGGACAACTCGGGGTTGTGAGCCGGGTTAAGGCCTGCGG
CAGGGGCTTCTGGTTTGTCATGAGGTGGTGGTGAGGTGCTGCGCGGTGTA
GCGGTGCTGCTTTTACTGTTGCTATAAGAAGCAGCAACGCGGCACGCTCC
TGACTGAACCAATCCTTGACTAATTCCCCCCCTCCCATCGTTGTTGTACC
AGCCTGCACCCACCGGAAGAGTGACTTATTTTGTCAGGGGTTATGTTGTG
TTTGGTTGTTGTTTATTTGCTTGTTTGTATTCTTGACCTGCGTCGTGTCC
TGTCCGAGGGTATGTTCCTTTATTTTTATTTTTATTTTTACCCCCTGTTG
GTGGGCGGTATAATCGGGGGAAGACTATGTGGACCTGTGCGGGCCTGGCT
GGCGAGAACCCGGCGCGGAACCCCCCGGCTTTGTTGGGGTACCAAGATGG
TGGTGTTGGCTGTGTTCCAGTTTTGTTTTTACCCCACATAGCGTGTAGAG
GGGAGCGGAGAGCTCCAGATTCGATATCTGTTTTATTGTTGCTTTGCTGG
CCCCTCGGGTCCATTTTATGTTTCGTGTACCTTTTCTTTGGGTATACGTT
AGCCCGTGACCACGGGAATTGACCGCATCAAGTGTTGGATTAGTACGGAC
ATTGAGAGGTACTCGATGGAGAGATCGGAACGGTTTTTAATGTGAAGACA
ACATACAACATACAACATACACACACACACTGCCTGCTGCTGTACCCTCC
GGTGCGATTACTTGGCGTGGAATTGGAACACGCGCCTCCCAGGGCCTACA
CGGTCACGGACAGCCCAACCCCCGCTTTTTTCACATTGTATGGAAAACAT
ATTTACTGCTGCTACTGCTGTGTTTCGAGCTATCACAAATGTTATATATA
GAGTCATCGACGGCGGCAACACCCCGTTTAGGCATTGCGAAGTGAATTCT
GGTGAACCGATCCATTTCGAAAAGAACCCCCCTTCCCGTTCCCCCCTCCC
ATGGGTGTGTACTGCTGTCCCAACGGCTGTCCCAACTGCTGTCCCAGCTG
AGGGAGGCCGCGAAAAAGGAGGAAAAGCGGCAGCAGAAGAGGCGGAGCGA
GTCCAAGGCCCACAAGGAACGCCTTCGCTCCAAGCAGAAAACCCTCCTTC
TCGACTTCGGGAGGTCCGCCGGCGCTTCTTCCAAGGGCGGCGCCGAGTCC
TCCGCGGCTTCCGGCTCTAACAAGGGAGGGGCGTTGCTCGAAGGCATGGC
CTGGGAAGTACTTTGGCAGGTGAATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11465:3925..6052+

>mRNA_L-elsbetiae_contig11465.1287.1 ID=mRNA_L-elsbetiae_contig11465.1287.1|Name=mRNA_L-elsbetiae_contig11465.1287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1800bp|location=Sequence derived from alignment at L-elsbetiae_contig11465:3925..6052+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCCGAGCTGGCCACACCATCATCAACACAACCACCGGCGTCATCATG
GGGGAGTCTCGGGCGCGGGGCAGGCGGAGGAGGAGGAGGAGGACAACGAC
GACAAACACCCTTCCCACGAAGCATGAACAGCGACAAGGCCATCAAGCTG
CCCCTCCACGTCGTCGGCCTCCAGTTCCGAGAGAACAACAGCACCGCTTG
GCCTTCACCCCCGGCGCCCCCGGGGCAGGGCGGCAGCCCACACCACAGCC
CCGCCGAGCCGCACGCAACTCCGCCCGGCATCAGCGGCAACACGGCCTTG
GAAGTCGAGCGCGAGCCGTGCAACCTCCACGACCGCAACGCTATCAAGGT
ACTCCTCCCCGCTCCTGCTCGGCAGCAGCCACCCTTGCCGCCGTCGCCGG
GTGGTCGCCGCCGCTGCCGGTCCTCCTCCGCCCCCTCGCGCTTCCTCGGT
TACATCCCCGGGAGGATCGCCGTGCTGATGGCTCCGCTGATGGATGCCTC
GCCCCCCGCGGCGCGCGTGACCCTAAAGAGCGTTGAGCACGAGGAGGAGG
AGGAGAAGGAGGGGGGGGGGGCTGGACCGCCGGGTCCCCGCAACACGCTG
CCGGCTCTGCTGGAGGTGAAACCGCTCGATGGCGCTGGCAGAGAGCCGTT
TTCAGGTGTGGTAGCCAAGACAGCCGAGCTGGCCACACCATCATCAACAC
AACCACCGGCGTCATCATGGGGGAGTCTCGGGCGCGGGGCAGGCGGAGGA
GGAGGAGGAGGACAACGACGACAAACACCCTTCCCACGAAGCATGAACAG
CGACAAGGCCATCAAGCTGCCCCTCCACGTCGTCGGCCTCCAGTTCCGAG
AGAACAACAGCACCGCTTGGCCTTCACCCCCGGCGCCCCCGGGGCAGGGC
GGCAGCCCACACCACAGCCCCGCCGAGCCGCACGCAACTCCGCCCGGCAT
CAGCGGCAACACGGCCTTGGAAGTCGAGCGCGAGCCGTGCAACCTCCACG
ACCGCAACGCTATCAAGGTACTCCTCCCCGCTCCTGCTCGGCAGCAGCCA
CCCTTGCCGCCGTCGCCGGGTGGTCGCCGCCGCTGCCGGTCCTCCTCCGC
CCCCTCGCGCTTCCTCGGTTACATCCCCGGGAGGATCGCCGTGCTGATGG
CTCCGCTGATGGATGCCTCGCCCCCCGCGGCGCGCGTGACCCTAAAGAGC
GTTGAGCACGAGGAGGAGGAGGAGAAGGAGGGGGGGGGGGCTGGACCGCC
GGGTCCCCGCAACACGCTGCCGGCTCTGCTGGAGGTGAAACCGCTCGATG
GCGCTGGCAGAGAGCCGTTTTCAGGTGTGGTAGCCAAGCTGAGGGAGGCC
GCGAAAAAGGAGGAAAAGCGGCAGCAGAAGAGGCGGAGCGAGTCCAAGGC
CCACAAGGAACGCCTTCGCTCCAAGCAGAAAACCCTCCTTCTCGACTTCG
GGAGGTCCGCCGGCGCTTCTTCCAAGGGCGGCGCCGAGTCCTCCGCGGCT
TCCGGCTCTAACAAGGGAGGGGCGTTGCTCGAAGGCATGGCCTGGGAAGT
ACTTTGGCAGGTGAATTGACTGAGGGAGGCCGCGAAAAAGGAGGAAAAGC
GGCAGCAGAAGAGGCGGAGCGAGTCCAAGGCCCACAAGGAACGCCTTCGC
TCCAAGCAGAAAACCCTCCTTCTCGACTTCGGGAGGTCCGCCGGCGCTTC
TTCCAAGGGCGGCGCCGAGTCCTCCGCGGCTTCCGGCTCTAACAAGGGAG
GGGCGTTGCTCGAAGGCATGGCCTGGGAAGTACTTTGGCAGGTGAATTGA
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