mRNA_L-elsbetiae_contig11463.1285.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11463.1285.1
Unique NamemRNA_L-elsbetiae_contig11463.1285.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 4.610e-90
Identity = 211/440 (47.95%), Postives = 255/440 (57.95%), Query Frame = 3 
Query:    3 VEMTVVSALFMLPAGLFFPALLRAANTPPASQTLKRTE-------GVHQDAIEDTEDKMAHEHQANE-----------PRARLARWKSSKSR-----------RAWFGNHRDKVAHSSMPTPMRRQGTASPFLAPSAAATVVEMTAYKDVMEMQKMLLAVYLPLPILLAMLVSE--------------------------------------------------------------------------VLRVSTKAEEAGGDDHAFLHIMVTSLSLACCVLSALSAFAVVSRNARVMMQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEVQKQYENVLSDLIEGDLVAAWSNPTRQMHNVAETIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSLNILAGGAVVTTILCLTYTNMVFAVKFDR 1013
            VEMTVVSAL MLP G+ FPALLRA NTPPASQTLKR         G + D  ++ + K   E + N+           P  R ++++ S  R           R  F   RD     + PT   R  + S  L P+  +       ++DV+ MQK LL VYLPLP+LLAMLVSE                                                                          VLR+S +AE AGGD+HAFLH MVTSLS+AC VL ALSAFAVVSR+AR+M+QTT+FQAVVAPGL LCGVLLY SSASIA GAVLGAA+AL+GSYL+ VQ++ E++L++LIEGDLVAAWS PTR+MH  AE +Q C+R+H AS RM RALEF TWLH CR QRR + +LA GA+  TILCL YTNMVFA+KFDR
Sbjct:  985 VEMTVVSALLMLPTGVIFPALLRAGNTPPASQTLKRVAVRQEEPAGPNHDLYDELQRKQ--EERVNDFRIALQDGERSPSIRASKFRHSLHRTPRSNARGQIHRGGFSAPRDSPPRKTAPTRFSRSMSTSD-LKPTGLSNT-----FRDVVAMQKTLLLVYLPLPMLLAMLVSELLFTPQRLRLPCCMPVQQQGHGHDVTVGDLARNKCNRSALVSWKTSQNDFCSCSAGFTSSSEMKRRYRVLCKWQVLRISGEAEAAGGDEHAFLHNMVTSLSVACSVLCALSAFAVVSRSARIMVQTTTFQAVVAPGLALCGVLLYSSSASIAAGAVLGAAVALVGSYLVGVQRKCEDILNELIEGDLVAAWSQPTREMHKAAEIVQRCYRIHHASVRMTRALEFHTWLHGCRRQRRGMQVLASGALYITILCLIYTNMVFAIKFDR 1416
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BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: A0A6H5JGV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV2_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 9.020e-78
Identity = 167/401 (41.65%), Postives = 240/401 (59.85%), Query Frame = 3 
Query:    6 EMTVVSALFMLPAGLFFPALLRAANTPPASQT-LKRTEGVHQDAIEDTEDKMA------HEH--QANEPRARLARWKSSKSRRAWFGNHRDKVAHSSMPTPMRRQG------TASPFLAPSAAATVVEMTA-YKDVMEMQKMLLAVYLPLPI-LLAMLVSEVLRVSTKAEEAG-GDDHAFLHIMVTSLSLACCVLSALSAFAVVSRNARVMMQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEVQKQYENVLSDLIEGDLVAAWSNPTRQMHNVAETIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSLNILAGGAVVTTILCLTYTNMVFAVKFDRTTSADWLTTCILAVLVEAFIQQPASLLATGVLGDFIEEGANLIVDLI 1154
            +MTV +ALFM+P  L FP LLR ANTPP S+T +K     H    ++   + A      H H    N PR       S+K      G     +     PT  RR+         SP +  S +      TA Y+D++  Q++++A+ L LP+ + A+ V  V+ V+ +A  +  GD +A +H +  SL + C +L   SA+ V +     M +  +FQA+VAPGL+LCG +L+ S  ++ATGA+L     L+ SYL  +Q++ E VL  + E DL+ AWSNPT  MH+ A  +Q  FRMHLA+ RM RA+EF TWL++C+PQR  + IL    +  TILCL YTN+VFA +FDR+T  DWLTTC+LAV++EA +QQP  LL TGVLGDF+EEGA+ +++++
Sbjct:  154 QMTVTTALFMIPTALVFPFLLRKANTPPISETVIKAGRSRHDAPFKENSRRHAQHGVLGHHHPPDKNTPRDEQQPALSTKRSSVIRGTVVTNITLQDPPTLARRRERKPSAFVQSPTVVESISGVSANKTAVYRDIIMWQRVIVALCLILPVWMAAVFVPMVILVALEASSSPEGDPNALVHNLTASLGIVCSLLCVYSAYGVGAHRVIAMTKAMAFQAIVAPGLVLCGGMLFDSDTALATGAMLSGLACLLCSYLTRLQRKNELVLKGVCEQDLITAWSNPTLDMHSAAAVVQRSFRMHLAATRMARAVEFSTWLNNCKPQRSYMYILVNSIIYVTILCLAYTNLVFAARFDRSTCTDWLTTCVLAVMIEATLQQPVVLLMTGVLGDFVEEGADFLLEVL 554
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BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: D7FJB6_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB6_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 2.960e-76
Identity = 171/287 (59.58%), Postives = 202/287 (70.38%), Query Frame = 3 
Query:    3 VEMTVVSALFMLPAGLFFPALLRAANTPPASQTLKRTEGVHQDAIEDTE---DKMAHEHQANEPRARLARWKSSKSRRAWFGN-HRD--KVAHSSMPTPMRRQGTASPFLAPSAAATVVEMTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAEEAGGDDHAFLHIMVTSLSLACCVLSALSAFAVVSRNARVMMQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEVQKQYENVLSDLIEGDLVAAWSNPTRQMHNVAETIQSCFR 845
            VEM VVSALFMLPAG+ FPALLR ANTPPASQTL+R   + +      E   D+   E +  +        +   +RR  F   HR   K +   M T +  QGTASPFL P   A VVE  AY DV+EMQK LL VY+PLPILLAMLVSEVL VS +AE  GGD++A LH MVTSLSLA  VL  +SAF+V+SR+AR M + T+FQ VVAPG+ LCGVLL GSS  IA GAVLGA I L+G+YL+ +Q++YE +LSDLIEGDLVAAWSNPTR+MH  AETIQ CFR
Sbjct: 1132 VEMAVVSALFMLPAGVVFPALLRVANTPPASQTLQRPVSLEEQPERTAEYRTDRRQVEQEKTDDGFLATLQQGDATRRVGFQEQHRPPRKASPIRMFTAIEAQGTASPFLKPKPNAAVVETAAYLDVVEMQKALLLVYVPLPILLAMLVSEVLSVSREAEADGGDEYAVLHNMVTSLSLASSVLCMVSAFSVMSRSARTMRKATAFQGVVAPGMALCGVLLLGSSVFIAAGAVLGAVITLVGAYLVGIQRKYEEILSDLIEGDLVAAWSNPTREMHKAAETIQCCFR 1418
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BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: D7FJB7_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB7_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 7.790e-75
Identity = 173/318 (54.40%), Postives = 215/318 (67.61%), Query Frame = 3 
Query:    3 VEMTVVSALFMLPAGLFFPALLRAANTPPASQTLKRT-------EGVHQDAIEDTEDKMAHEHQANEPRARLARWKSS---KSRRAWFGNHRDKVAHSSMPTPMRRQGTASP---FLAPSAAATVVEMTAYKDVMEMQKMLLAVYLPLPILLAMLVSE-----------------------VLRVSTKAEEAGGDDHAFLHIMVTSLSLACCVLSALSAFAVVSRNARVMMQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEVQKQYENVLSDLIEGDLVAAWSNPTRQMHNVAETIQSCFRM 848
            VEMTV+SAL MLP G+ FPALLRA NTPPASQTLKR        EG + D  ++ + K   E + ++ R  L   +SS   +  R  F   RD     + PT        SP   + + + A  VV+  AY+DV+ MQK LL VYLPLP+LLAMLVSE                       VLR+S +AE AGGD++AFLH MVTSLS+AC VL ALSAFAVVSR+AR+M+QTT+FQAVVAPGL LCGVL+Y SSASIA GAVLGAA+AL+GSYL+ VQ++YE++L++LIEGDLVAAWS PTR+MH  AE +Q C+R+
Sbjct:  923 VEMTVISALLMLPTGVIFPALLRAGNTPPASQTLKRVPVRQEEPEGPNHDLYDELQRKQ--EERVDDFRTALQDARSSAREQMHRGGFSAPRDSPPRKTAPTRFVANVRRSPNEFYFSATNATPVVQTAAYRDVVAMQKTLLLVYLPLPMLLAMLVSEQQGHRHDVTVDDLAQNKCNRSALVLRISREAEAAGGDEYAFLHNMVTSLSVACSVLCALSAFAVVSRSARIMVQTTTFQAVVAPGLALCGVLMYNSSASIAAGAVLGAAVALVGSYLVGVQRKYEDILNELIEGDLVAAWSQPTREMHMAAEIVQRCYRV 1238
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BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: A0A6H5JVI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.650e-40
Identity = 121/370 (32.70%), Postives = 172/370 (46.49%), Query Frame = 3 
Query:    6 EMTVVSALFMLPAGLFFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDKMAHEHQANEPRARLARWKSSKSRRAWFGNHRDKVAHSSMPTPMRRQGTASPFLAPSAAATVVEMTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAEEA-GGDDHAFLHIMVTSLSLACCVLSALSAFAVVSRNARVMMQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEVQKQYENVLSDLIEGDLVAAWSNPTRQMHNVAETIQSCFR---------------------------------MHLASQRMVRALEFRTWLHDCRPQRRSLNILAGGAVVTTILCLTYTNMVFAVKFDR 1013
            EMT  +ALFM+P  L FPA++R ANTPP+S+TL R            + K AH+ Q      +L              + RD++  +      R +  A                A  DV   Q                    V RV  +AE+A GG+ +A LH +  SL + C +L A+SA+ V +    +M Q   FQAV+AP L+LCG +LYGSS  +ATGAV G    L+ +Y + V ++ E V+  + E DL+ AWS+P   MH+    +Q  +R                                 +H A  R  R +EF TWL+ C+ +R  +++L    V   ILCLTYTN+VFA+KFDR
Sbjct:   23 EMTAATALFMIPTALVFPAMMRLANTPPSSETLTRVR----------KHKTAHKQQPQGGNKQLM-------------SQRDRLVKA-----QREEFHA----------------ALSDVTGPQ--------------------VFRVMGEAEKAPGGNQNARLHNVTASLGILCTLLCAVSAYGVAAHRVTIMSQAMVFQAVLAPALVLCGAILYGSSVGLATGAVFGGLGTLVCAYFLRVHRRIELVVRKVCEDDLITAWSHPVPSMHSAVLRVQQAYRGFLLSAYHYCTSFIESTVGDNLVLNLGCTTLTRIHRAMTRTARIVEFTTWLNKCKRRRSVMHMLVNSVVYVVILCLTYTNLVFAIKFDR 328
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BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: D7G0E0_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E0_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.910e-37
Identity = 83/194 (42.78%), Postives = 121/194 (62.37%), Query Frame = 3 
Query:  435 EVLRVSTKAE-EAGGDDHAFLHIMVTSLSLACCVLSALSAFAVVSRNARVMMQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEVQKQYENVLSDLIEGDLVAAWSNPTRQMHNVAETIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSLNILAGGAVVTTILCLTYTNMVFAVKFDR 1013
            +V RV  +AE +AGG+   FLH +  SL +AC +L   SA+ VV+    +M Q  + QAV+ P L+LCG +L+GS   +ATGAV G    L+ +Y + + ++ E V+  + + DL+  WS+P   MH+ A  +Q  FRMH A++R  RA+EF TWLH+C+  R  + +     V   ILCLTY N+VFA+KFDR
Sbjct:  430 QVFRVMDEAEGDAGGNQEEFLHNLTASLGIACGLLCLFSAYGVVTHRVTIMSQAMAAQAVITPALVLCGAVLFGSDIGLATGAVFGGLGTLLCAYFLNMHRKNELVVQRVCQEDLITTWSHPLPFMHSAALPVQRAFRMHRAAKRTTRAIEFNTWLHECKHGRSVMYVCLNSLVYVVILCLTYANLVFAIKFDR 623
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BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: A0A835ZE00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE00_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.460e-19
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 3 
Query:  870 VRALEFRTWLHDCRPQRRSLNILAGGAVVTTILCLTYTNMVFAVKFDRTTSADWLTTCILAVLVEAFIQQPASLLATGVLGDFIEEGANLIVDLI 1154
            +RA EF  WL  C P R +L +LA       I CL Y N+V+ V FD  T   WL TC  A+LVE  +QQP  L+ T VLGDF+E+G+N+++D++
Sbjct:  153 IRAAEFAAWLKGCAPHRAALLLLAHACTALAIACLLYVNLVYGVVFDERTGCGWLLTCFFAMLVEGIVQQPLVLMVTAVLGDFVEQGSNVLLDVL 247
[Close]
BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Match: A0A6H5JM73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM73_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.960e-14
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 3 
Query:  675 GAVLGAAIALIGSYLIEVQKQYENVL-SDLIEGDLVAAWSNPTRQMHNVAETIQSCFR-------------MHLASQRMVRALEFRTWLHDCRPQRRSLNILAGGAVVTTILCLTYTNMVFAVKFDR 1013
            GAV G    L+  YL+++ +Q E    S + + DL+  WS P   MH+ A  +Q  FR             MH  + R  RA+EF T L++C+ +R  + +     V   ILCLTY N+VFA+KFDR
Sbjct:    9 GAVFGGLGTLVCPYLLKMHRQAERTGGSKVCQEDLITTWSYPLPFMHSAALHLQRAFRTDQVECGAQTVSRMHRDATRTTRAIEFNTCLNECKQRRSMMYVCPNSVVYVAILCLTYANLVFAIKFDR 135
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11463.1285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JCS7_9PHAE4.610e-9047.95REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JGV2_9PHAE9.020e-7841.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJB6_ECTSI2.960e-7659.58GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJB7_ECTSI7.790e-7554.40GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVI0_9PHAE1.650e-4032.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0E0_ECTSI1.910e-3742.78GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZE00_9STRA3.460e-1946.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JM73_9PHAE2.960e-1437.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11463contigL-elsbetiae_contig11463:1420..6144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons7
Model size2241
Cds size1149
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815353.000188-UTR-L-elsbetiae_contig11463:1419..25031622815353.000188-UTR-L-elsbetiae_contig11463:1419..2503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11463 1420..2503 -
1691682856.13174-UTR-L-elsbetiae_contig11463:1419..25031691682856.13174-UTR-L-elsbetiae_contig11463:1419..2503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11463 1420..2503 -
1622815353.0886564-UTR-L-elsbetiae_contig11463:6136..61441622815353.0886564-UTR-L-elsbetiae_contig11463:6136..6144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11463 6137..6144 -
1691682856.22116-UTR-L-elsbetiae_contig11463:6136..61441691682856.22116-UTR-L-elsbetiae_contig11463:6136..6144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11463 6137..6144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815353.0095804-CDS-L-elsbetiae_contig11463:2503..26481622815353.0095804-CDS-L-elsbetiae_contig11463:2503..2648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 2504..2648 -
1691682856.1418135-CDS-L-elsbetiae_contig11463:2503..26481691682856.1418135-CDS-L-elsbetiae_contig11463:2503..2648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 2504..2648 -
1622815353.018379-CDS-L-elsbetiae_contig11463:3012..31801622815353.018379-CDS-L-elsbetiae_contig11463:3012..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 3013..3180 -
1691682856.1495333-CDS-L-elsbetiae_contig11463:3012..31801691682856.1495333-CDS-L-elsbetiae_contig11463:3012..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 3013..3180 -
1622815353.0291324-CDS-L-elsbetiae_contig11463:3573..37421622815353.0291324-CDS-L-elsbetiae_contig11463:3573..3742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 3574..3742 -
1691682856.1574502-CDS-L-elsbetiae_contig11463:3573..37421691682856.1574502-CDS-L-elsbetiae_contig11463:3573..3742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 3574..3742 -
1622815353.0418844-CDS-L-elsbetiae_contig11463:3910..41481622815353.0418844-CDS-L-elsbetiae_contig11463:3910..4148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 3911..4148 -
1691682856.1671073-CDS-L-elsbetiae_contig11463:3910..41481691682856.1671073-CDS-L-elsbetiae_contig11463:3910..4148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 3911..4148 -
1622815353.0512464-CDS-L-elsbetiae_contig11463:4745..49141622815353.0512464-CDS-L-elsbetiae_contig11463:4745..4914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 4746..4914 -
1691682856.1875393-CDS-L-elsbetiae_contig11463:4745..49141691682856.1875393-CDS-L-elsbetiae_contig11463:4745..4914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 4746..4914 -
1622815353.063835-CDS-L-elsbetiae_contig11463:5324..53821622815353.063835-CDS-L-elsbetiae_contig11463:5324..5382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 5325..5382 -
1691682856.1993234-CDS-L-elsbetiae_contig11463:5324..53821691682856.1993234-CDS-L-elsbetiae_contig11463:5324..5382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 5325..5382 -
1622815353.0790474-CDS-L-elsbetiae_contig11463:5934..61361622815353.0790474-CDS-L-elsbetiae_contig11463:5934..6136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 5935..6136 -
1691682856.2116575-CDS-L-elsbetiae_contig11463:5934..61361691682856.2116575-CDS-L-elsbetiae_contig11463:5934..6136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11463 5935..6136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11463.1285.1prot_L-elsbetiae_contig11463.1285.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11463 2504..6136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11463.1285.1

>prot_L-elsbetiae_contig11463.1285.1 ID=prot_L-elsbetiae_contig11463.1285.1|Name=mRNA_L-elsbetiae_contig11463.1285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=383bp
MTVVSALFMLPAGLFFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDKM
AHEHQANEPRARLARWKSSKSRRAWFGNHRDKVAHSSMPTPMRRQGTASP
FLAPSAAATVVEMTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTK
AEEAGGDDHAFLHIMVTSLSLACCVLSALSAFAVVSRNARVMMQTTSFQA
VVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEVQKQYENVLSD
LIEGDLVAAWSNPTRQMHNVAETIQSCFRMHLASQRMVRALEFRTWLHDC
RPQRRSLNILAGGAVVTTILCLTYTNMVFAVKFDRTTSADWLTTCILAVL
VEAFIQQPASLLATGVLGDFIEEGANLIVDLI*
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mRNA from alignment at L-elsbetiae_contig11463:1420..6144-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11463.1285.1 ID=mRNA_L-elsbetiae_contig11463.1285.1|Name=mRNA_L-elsbetiae_contig11463.1285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4725bp|location=Sequence derived from alignment at L-elsbetiae_contig11463:1420..6144- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGGAGATGACTGTTGTCAGTGCCCTGTTCATGCTGCCGGCCGGGTTA
TTTTTCCCCGCCCTCTTACGGGCTGCCAATACCCCGCCGGCATCGCAAAC
ACTGAAGCGCACTGAAGGCGTGCACCAAGACGCCATCGAGGACACCGAGG
ACAAAATGGCGCACGAGCACCAGGCAAACGAGCCCCGAGCGCGTCTTGCC
CGCTGGAAGAGTGAGTTAAAAGCAGGGATGTTCACGGGTCGGGTCAGAAA
CTGACGGGCCAGGTGCGGGTGGGATCAGAAACCGACGGGCCAAGTGCGGG
TCAGCTGACCCGACCCGACCCGTCAAATTTTTCCATCCCGGGTCACTGAC
CCGACCCGACCCGTCAAACGGGTGAAGCGTCTTGACCCGACCCGACCCAA
CCCGTCATATTTCAAATACTCTTGACCCGACCCGCGGGTCGGGTCCTGAC
CCGTGAAAATCCCTGGTTAAAAGCCCGTATGTATGTACCCAGTATATGCA
TAGCCTTGAGCTGGAATTACGTACGAAGCGTGCACTGCACACGCCGCCTT
GTCTCTACACAAATCGCAATAAGAACTCACGGGTTTAACGGGAAGGAGTT
GCTACAATGGGCTGCCCAGCTTGATGTTGCGTACTCGATTTTGCAGGACC
TGCGTCCAGCATGTGCATGCACACTTGACAACAACGCCAACGTGCACGTC
CCTGGTGGCCCTCATGGTGCTGTTAATTCTGTGCGGCGGTTGGCACCTGC
TATGTAACGCAGGCAGTAAGAGTCGGCGAGCTTGGTTCGGCAATCACCGG
GACAAAGTGGCGCACTCCAGGTGGGCTCAAAACGTTCCAAGATTTCGTGC
CGAAATGTTACACTTGCCCGCTCGTGTTTGCCTTGATCAGTTTTCGACCA
TTGTAGGCTTGGGCAGTAGCGGACATGACGACAACCTACGCCATGTAGCG
ATACTGACCAGCTCGCGAGCACGAGGGTACGTTGGTTGCTCAAGAAGCCT
CGCTTCAACGATTCTGTGACAAGAACTCTTGATTCTCGGGCATATTTTCC
CCTCTTGGCGTTTGCGATGGAGGTTTAGGCGCATTCACGCACTCGCGACA
CGAATGTATGCAGAAAAGTCACACAGCAGTTGAACGTGCCGGTGTTGATC
CCAGCCGCGCTTCAAAGAAAGCGACGAACAGCCGCACACGTTGAGGTTTA
TATCCACCTTCCCTCGTATTCCCCATCCAGCATGCCCACCCCGATGCGAC
GGCAAGGGACGGCGTCTCCTTTCTTAGCACCCAGCGCAGCCGCGACGGTA
GTGGAAATGACGGCGTACAAGGATGTTATGGAGATGCAGAAGATGTTGCT
TGCCGTCTATCTCCCCCTTCCAATCTTGCTGGCGATGCTCGTTTCTGAGG
TAAGGTGCGCCGAGTGAACGTTCGAGTCAGCTCTGCGACGATACCCGCCT
GGTAGCCCTTAGTGGGCATGGTTGCATTGCAAAGTAGTGTTATGCTGAAT
CAAAGAAACAAAACGATCATATGCAAAGCGGTTGTCATCGGTTGACGAAA
CTAGGCGCACGGCAACGACGCCCGCTCCGAAAAAGTGTTTTGTTGTCTTG
AGATATACCTGCGTATTTAACTATACCTGGTTGTTTTGGGATTTCCGCTG
TCGCTTGTTGTGCGCCTCTCTAGAATAGACAAGATTGCGTTGCGCTTAAT
GTCACATCCGGTCGTCCGCAGGTGTTCTTTTCCCTTCTATCAGGGACCGA
TATATCGCTCTCCATCAAAGTAGACCATTCCGGCCATATGTGATCTTCGA
GAACAGTCCAACCCCCCCACTTTCGCGGCTTCAGACCCCGCACGCTTTTG
CTCGCGCCTGTCACACGTCAACGATGTCAATGTGTTTTGCTTGACTGAGC
GTGACGTTGGTCTTCGGGATGGGCAAGAACTCACGCAACATTTGTTGAAT
AGTGAAGGAATGCGTGCGTGCATTGTCCGACCCTTCGCGACGCCAGGTGC
TCCGTGTTTCGACGAAAGCCGAAGAAGCAGGAGGGGACGACCACGCATTC
TTGCACATTATGGTCACGTCCCTGAGCTTGGCGTGCTGTGTTTTGAGTGC
GCTTTCAGCCTTTGCAGTTGTAAGTCGTAACGCCAGGGTCATGATGCAGA
CAACGTCTTTTCAAGCCGTCGTCGCCCCGGGCCTGATGCTGTGCGGCGTT
CTTCTGTACGGGTCAAGCGCTTCTATTGCAACAGGTGGGGCATGCCGAGA
GACGGATAGGGCAATCTCACAGCTTCTTGAGCATCGCGGAGCAGACCAGC
TGCATCTGTGGGGAAACTGCTGCTTCCCTTTGTGTGGAACAACATGTTTC
AGTTGAACACAGTCCATATACCACTGTCTCCGTGCTCACTTCATTGTTCC
AGGAGCGGTGCTAGGCGCGGCTATCGCGCTTATAGGTTCGTACTTAATTG
AGGTTCAAAAGCAGTACGAAAATGTACTGAGTGACTTAATCGAGGGCGAT
CTGGTGGCGGCGTGGTCGAACCCTACGAGGCAAATGCACAATGTGGCGGA
AACAATCCAGAGCTGTTTCAGGTGCGGCATCAACATTGATTTGAGTCAAC
TCGTGGCCTCCTGGGATGGGTGGACTTCGGGCAATATATCTATTCGGAAA
ATTCATTCCGAACCGCATTGTACCCGCACGCTGTAGTGGGGTTGGAACCT
TTGCGCCCAAGACCGATCGAAATATTTTGGTTTAATTTCAAGCCGCAATA
TCTTCGCCTGCCGAAGTGACGTGAAAATACGGTGGTCATGTCTAGATCTA
CGGAATGAGTCTGAAGTATGTTACAGACTTGGTGTGCCCCCAATAATGCT
GCAGCAACCGGCCGTCCCGAGCATTCTCTGAGCAACCGACAGCGGCTGAA
GTGTAAACATTTGGTTCCTGGCGAATGCGTTACACGCACAGACGTGTATT
CCTTGTCTCCGCAGAATGCATCTCGCCTCCCAGAGGATGGTTCGAGCGCT
AGAATTTCGCACGTGGCTGCACGATTGCCGTCCACAACGGCGCTCATTGA
ACATTCTTGCCGGTGGGGCCGTTGTCACGACCATACTGTGCCTGACCTAC
ACCAACATGGTATTCGCCGTCAAGTTTGATCGGTGAGTGCCATCACATCG
TGTCACCGTGGCAAAACACAGCTTTCTGCGAGACGATTTGATTGACAACC
GGAAATATATGCACGTACAGATAGATGTACTCTCGTGGCTGTTTTGAGAA
GAATTTCGAAGCTTTGTCAGCTCTCATCGACATGCGTGTGCCGTTTGGGC
GGCTTTATGTGTGCGAGCCTGTAGAGCACTACTCCGAGCACAGCGCGGCA
CAACATCACCTCTACCTACACCCGCGACATTGAAACCGAGACTGTACTTT
GTCAGGCTCATCCTACACGATTGCTCGACGAATGGGTTCAGTGATACTCA
GACGCTCGGATAATTTGTTTTCGATGGACCCCTTGTTGCTCTCCAGCACT
ACCTCGGCCGATTGGCTGACTACCTGCATCCTGGCCGTCTTGGTGGAAGC
GTTCATCCAGCAACCGGCTTCTCTGCTGGCGACAGGAGTGCTGGGGGACT
TCATCGAAGAAGGAGCAAATCTGATTGTGGATCTGATATAGTCTAGTAGC
TCCGGGTAGGAGCATATCTACCCCGTGAGGTTGCCGGGACGCGGGGTGAT
GATATAGAGGTGGAAGTGGCGCGAACGTAAGACAAGCGTAGTATGTGAGC
TTGCCAGAGTGTCTTCGAAATCTCGAACTCCTGTACTGGTACAGTGGGGG
GGGCTCTGCAGTGCCGGTTTATCTACTTAGACTAGTGATGGCGGGTGCGC
GGTATATTGTGGGTGAAACCACGTGGGACAACCCAGATATGGTGATGATC
GAAGTGCATTCATCATGTCATCGCGACAGAGTCATGTCGCGGCTTGTTTG
AAGCTCTAGATGCAGTAGGATGGAAGGTTTGCTCCATATATAGATATGTC
TACTGCATTGATTGATATGTCTCACAGACTCATTCCCTGACCCGTAAGCG
TGGTTTTCTAAATGGTGCATTCAGTCGTCGTTGTTTCTTCATGCGTTCAA
ACCGCTCGACCCGAAAAACATGGACGGTGTTGTGTTAAATGTGGAATCTT
CTTGAAAAAACAAAACAATGAGGTGCATAGAGCGTGCGGGTGAAGCAGGA
CTTTTGGTTTTGGGGTCCTTGTTTATATTCACTTTTGGAAGTGTCTCTCT
TTTTATTGTCCGTGGGTTTCTAGGTCGTGTTGGGAAGGAGTTGCGTTGGT
TCTGTGGAAGGGCGTGTTTTGTATCTGGCAAGTTGAGGTTTTATTGTGTA
GTATTGTGATCGTGTTTGTATTGTACAAGTGGATCAAATAATTCAAAAGG
CGGGTTTCTTGATGGCGCAGAGGAGTCATGCCACGATAGGGCTTGCACTT
TTGGGCTCAAACACGACTGATTCGGGGGCTCCTAAACTTAGGAACCACCA
AAGATATTGACAAGACCAAGTTAAATTCTCGTTTCGGATACGGAATTCAC
TCGCTTTTCGAAATACTTATTGTGGCGTGTTTTCATGATATTTCTGCGTT
GGCTTCGGGATAAGATACAGCCCTCCTAACACTGGAAAAACAAGACGTCC
TTTTGTGTGTTTAGCATATATTCGTGGTTGAGCCTCAGAGACCAGATGAT
GTTATTAACCGCATGTATTAGCTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11463:1420..6144-

>mRNA_L-elsbetiae_contig11463.1285.1 ID=mRNA_L-elsbetiae_contig11463.1285.1|Name=mRNA_L-elsbetiae_contig11463.1285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2298bp|location=Sequence derived from alignment at L-elsbetiae_contig11463:1420..6144- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGTTGTCAGTGCCCTGTTCATGCTGCCGGCCGGGTTATTTTTCCC
CGCCCTCTTACGGGCTGCCAATACCCCGCCGGCATCGCAAACACTGAAGC
GCACTGAAGGCGTGCACCAAGACGCCATCGAGGACACCGAGGACAAAATG
GCGCACGAGCACCAGGCAAACGAGCCCCGAGCGCGTCTTGCCCGCTGGAA
GAATGACTGTTGTCAGTGCCCTGTTCATGCTGCCGGCCGGGTTATTTTTC
CCCGCCCTCTTACGGGCTGCCAATACCCCGCCGGCATCGCAAACACTGAA
GCGCACTGAAGGCGTGCACCAAGACGCCATCGAGGACACCGAGGACAAAA
TGGCGCACGAGCACCAGGCAAACGAGCCCCGAGCGCGTCTTGCCCGCTGG
AAGAGCAGTAAGAGTCGGCGAGCTTGGTTCGGCAATCACCGGGACAAAGT
GGCGCACTCCAGGCAGTAAGAGTCGGCGAGCTTGGTTCGGCAATCACCGG
GACAAAGTGGCGCACTCCAGCATGCCCACCCCGATGCGACGGCAAGGGAC
GGCGTCTCCTTTCTTAGCACCCAGCGCAGCCGCGACGGTAGTGGAAATGA
CGGCGTACAAGGATGTTATGGAGATGCAGAAGATGTTGCTTGCCGTCTAT
CTCCCCCTTCCAATCTTGCTGGCGATGCTCGTTTCTGAGCATGCCCACCC
CGATGCGACGGCAAGGGACGGCGTCTCCTTTCTTAGCACCCAGCGCAGCC
GCGACGGTAGTGGAAATGACGGCGTACAAGGATGTTATGGAGATGCAGAA
GATGTTGCTTGCCGTCTATCTCCCCCTTCCAATCTTGCTGGCGATGCTCG
TTTCTGAGGTGCTCCGTGTTTCGACGAAAGCCGAAGAAGCAGGAGGGGAC
GACCACGCATTCTTGCACATTATGGTCACGTCCCTGAGCTTGGCGTGCTG
TGTTTTGAGTGCGCTTTCAGCCTTTGCAGTTGTAAGTCGTAACGCCAGGG
TCATGATGCAGACAACGTCTTTTCAAGCCGTCGTCGCCCCGGGCCTGATG
CTGTGCGGCGTTCTTCTGTACGGGTCAAGCGCTTCTATTGCAACAGGTGC
TCCGTGTTTCGACGAAAGCCGAAGAAGCAGGAGGGGACGACCACGCATTC
TTGCACATTATGGTCACGTCCCTGAGCTTGGCGTGCTGTGTTTTGAGTGC
GCTTTCAGCCTTTGCAGTTGTAAGTCGTAACGCCAGGGTCATGATGCAGA
CAACGTCTTTTCAAGCCGTCGTCGCCCCGGGCCTGATGCTGTGCGGCGTT
CTTCTGTACGGGTCAAGCGCTTCTATTGCAACAGGAGCGGTGCTAGGCGC
GGCTATCGCGCTTATAGGTTCGTACTTAATTGAGGTTCAAAAGCAGTACG
AAAATGTACTGAGTGACTTAATCGAGGGCGATCTGGTGGCGGCGTGGTCG
AACCCTACGAGGCAAATGCACAATGTGGCGGAAACAATCCAGAGCTGTTT
CAGGAGCGGTGCTAGGCGCGGCTATCGCGCTTATAGGTTCGTACTTAATT
GAGGTTCAAAAGCAGTACGAAAATGTACTGAGTGACTTAATCGAGGGCGA
TCTGGTGGCGGCGTGGTCGAACCCTACGAGGCAAATGCACAATGTGGCGG
AAACAATCCAGAGCTGTTTCAGAATGCATCTCGCCTCCCAGAGGATGGTT
CGAGCGCTAGAATTTCGCACGTGGCTGCACGATTGCCGTCCACAACGGCG
CTCATTGAACATTCTTGCCGGTGGGGCCGTTGTCACGACCATACTGTGCC
TGACCTACACCAACATGGTATTCGCCGTCAAGTTTGATCGAATGCATCTC
GCCTCCCAGAGGATGGTTCGAGCGCTAGAATTTCGCACGTGGCTGCACGA
TTGCCGTCCACAACGGCGCTCATTGAACATTCTTGCCGGTGGGGCCGTTG
TCACGACCATACTGTGCCTGACCTACACCAACATGGTATTCGCCGTCAAG
TTTGATCGCACTACCTCGGCCGATTGGCTGACTACCTGCATCCTGGCCGT
CTTGGTGGAAGCGTTCATCCAGCAACCGGCTTCTCTGCTGGCGACAGGAG
TGCTGGGGGACTTCATCGAAGAAGGAGCAAATCTGATTGTGGATCTGATA
TAGCACTACCTCGGCCGATTGGCTGACTACCTGCATCCTGGCCGTCTTGG
TGGAAGCGTTCATCCAGCAACCGGCTTCTCTGCTGGCGACAGGAGTGCTG
GGGGACTTCATCGAAGAAGGAGCAAATCTGATTGTGGATCTGATATAG
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