mRNA_L-elsbetiae_contig11460.1281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11460.1281.1
Unique NamemRNA_L-elsbetiae_contig11460.1281.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11460.1281.1 vs. uniprot
Match: D7FL73_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL73_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 8.450e-62
Identity = 103/110 (93.64%), Postives = 105/110 (95.45%), Query Frame = 3 
Query:   45 PTRPPPVYELSFGVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSDPVPVPLDKKVTYRYCVVAGGKLKRWEDISVDRELDPVTEPSAAPVMVEDVLDK 374
            PTRPPP YELSF VEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSS PVPVPL+KKVTYRYCVVAGGKLKRWEDISVDRELDPVTEPSAA  +VEDVLDK
Sbjct:   11 PTRPPPAYELSFAVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSGPVPVPLNKKVTYRYCVVAGGKLKRWEDISVDRELDPVTEPSAATAIVEDVLDK 120
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BLAST of mRNA_L-elsbetiae_contig11460.1281.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 205 bits (522), Expect = 5.950e-59
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 3 
Query:   51 RPPPVYELSFGVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSDPVPVPLDKKVTYRYCVVAGGKLKRWEDISVDRELDPVTEPSAAPVMVEDVLDK 374
            RPPP YELSFGVEAKLGHGEVIYVCGSCPSLG+KDPSRALRLVTDPSSYPVWSS+PVPVPL +KVTYRYC+VAGGKLKRWEDI+VDRELDPV E  AAPVM EDVLDK
Sbjct:    3 RPPPAYELSFGVEAKLGHGEVIYVCGSCPSLGSKDPSRALRLVTDPSSYPVWSSEPVPVPLGQKVTYRYCIVAGGKLKRWEDIAVDRELDPVKEADAAPVMAEDVLDK 110
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BLAST of mRNA_L-elsbetiae_contig11460.1281.1 vs. uniprot
Match: A0A835YZM5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.240e-23
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 3 
Query:   60 PVYELSFGVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSDPVPVPLDKKVTYRYCVVAGGKLKRWEDISVDRELDPVTEPSA 341
            P YE+ F V A+LGHGEV +V G+CPSLG  D   A+ L T P +YP+W S P+ +PL + V Y+Y V +GG+ KRWE++  DR LD VT  +A
Sbjct:    2 PFYEVEFEVTAELGHGEVPFVAGTCPSLGNMDYKSAVLLTTTPDTYPIWRSPPLALPLHQIVLYKYGVFSGGEFKRWEEVIEDRVLDVVTTATA 95
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BLAST of mRNA_L-elsbetiae_contig11460.1281.1 vs. uniprot
Match: A0A7S2Y1E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1E9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.000e-14
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 3 
Query:   72 LSFGVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSDPVPVPLDKK---VTYRYCVVAGGKLKRWEDISVDRELD--------PVTE--------------PSAAPVMVEDVLDK 374
            + F V AK+G GE + VCG+C +LG+   S  ++L T P  YP WSS  VP+ L      V YRY +  GG+  RWE+ + D +          P TE              P+  P+ VED+LD+
Sbjct:    8 VGFRVNAKVGFGEEVVVCGNCSALGSNVASHGIKLKTSPEEYPYWSSSLVPLALSSNTFDVKYRYGIFRGGEFLRWEESTSDGDKSRETTSSQKPETEDKKEVRMRELRNLDPNGPPLWVEDILDE 133
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BLAST of mRNA_L-elsbetiae_contig11460.1281.1 vs. uniprot
Match: A0A2R5GMJ6_9STRA (Alpha,alpha-trehalose-phosphate synthase UDP-forming n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMJ6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-12
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 3 
Query:   63 VYELSFGVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVW-SSDPVPVPLDKKVTYRYCVVAGGKLKRWEDISVDRELDPVTEPSAAPVMVEDVL 368
            V  + F   A +  GE + + G   +LG+ D    ++LVT P  +P W ++ P+P+P  + +TYRYC+++GG+L RWED+  D+  +   E   +P+ + D L
Sbjct:    6 VVGVGFNAIAPVQRGETVCLVGDVAALGSGDHRYGVQLVTAPDVFPEWYTAQPIPLPAGQVITYRYCILSGGELSRWEDLPGDKPREIFVE---SPMTINDTL 105
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BLAST of mRNA_L-elsbetiae_contig11460.1281.1 vs. uniprot
Match: A0A196S7Q7_BLAHN (Trehalose-phosphatase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S7Q7_BLAHN)

HSP 1 Score: 65.5 bits (158), Expect = 6.840e-10
Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:   69 ELSFGVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSDPVPVPLDKKVTYRYCVVAGGKLKRWE 293
            ++ F V+A++ HG  + V GS   LG   P  ++ L T P+ YP+W S+P+ +P + K++Y+Y   +GG  + WE
Sbjct:   71 KVEFQVKAEVPHGVTVRVSGSVAQLGYFSPGSSIPLHTSPTEYPIWKSNPIYLPKNTKISYKYLRYSGGVFESWE 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11460.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FL73_ECTSI8.450e-6293.64Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
V5K3Y9_SACJA5.950e-5989.81Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
A0A835YZM5_9STRA4.240e-2351.06Glycosyltransferase family 20-domain-containing pr... [more]
A0A7S2Y1E9_9STRA2.000e-1435.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2R5GMJ6_9STRA1.400e-1233.98Alpha,alpha-trehalose-phosphate synthase UDP-formi... [more]
A0A196S7Q7_BLAHN6.840e-1036.00Trehalose-phosphatase n=1 Tax=Blastocystis sp. sub... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11460contigL-elsbetiae_contig11460:4062..5217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue4.9e-10
Seed eggNOG ortholog2880.D7G011
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Ec32 ortholog descriptionTrehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase
Ec32 orthologEc-19_005250.1
Exons2
Model size374
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11460.1281.1prot_L-elsbetiae_contig11460.1281.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11460 4064..5217 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.645185-UTR-L-elsbetiae_contig11460:4061..40631622815352.645185-UTR-L-elsbetiae_contig11460:4061..4063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11460 4062..4063 +
1691682855.881725-UTR-L-elsbetiae_contig11460:4061..40631691682855.881725-UTR-L-elsbetiae_contig11460:4061..4063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11460 4062..4063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.658245-CDS-L-elsbetiae_contig11460:4063..43711622815352.658245-CDS-L-elsbetiae_contig11460:4063..4371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11460 4064..4371 +
1691682855.8974712-CDS-L-elsbetiae_contig11460:4063..43711691682855.8974712-CDS-L-elsbetiae_contig11460:4063..4371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11460 4064..4371 +
1622815352.6713588-CDS-L-elsbetiae_contig11460:5153..52171622815352.6713588-CDS-L-elsbetiae_contig11460:5153..5217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11460 5154..5217 +
1691682855.9065113-CDS-L-elsbetiae_contig11460:5153..52171691682855.9065113-CDS-L-elsbetiae_contig11460:5153..5217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11460 5154..5217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11460.1281.1

>prot_L-elsbetiae_contig11460.1281.1 ID=prot_L-elsbetiae_contig11460.1281.1|Name=mRNA_L-elsbetiae_contig11460.1281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MVGSPSTGSGMMNRPTRPPPVYELSFGVEAKLGHGEVIYVCGSCPSLGAK
DPSRALRLVTDPSSYPVWSSDPVPVPLDKKVTYRYCVVAGGKLKRWEDIS
VDRELDPVTEPSAAPVMVEDVLDK
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mRNA from alignment at L-elsbetiae_contig11460:4062..5217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11460.1281.1 ID=mRNA_L-elsbetiae_contig11460.1281.1|Name=mRNA_L-elsbetiae_contig11460.1281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1156bp|location=Sequence derived from alignment at L-elsbetiae_contig11460:4062..5217+ (Laminarionema elsbetiae ELsaHSoW15)
GCATGGTGGGCAGCCCAAGCACCGGCAGCGGCATGATGAACAGACCGACC
AGGCCGCCGCCGGTGTACGAGCTGTCCTTCGGCGTCGAGGCCAAGCTCGG
CCACGGGGAGGTGATCTACGTTTGCGGCTCCTGCCCCTCCCTGGGCGCCA
AGGACCCCTCCCGCGCGCTCCGCCTGGTGACAGACCCGTCCAGCTACCCC
GTGTGGAGCTCCGACCCGGTCCCGGTGCCCCTGGACAAGAAGGTCACCTA
CCGGTACTGCGTGGTGGCAGGAGGAAAGCTTAAGCGGTGGGAAGACATCT
CTGTAGACAGGTGGGTGCGGCGGCGGTGGCGACGCGGTGCGGGGCCCCCG
GGAGGGACGGTGTGTTATTTTAGGGGGGGGGGGGTTATTGCTTATCTCCA
CGTTTATTTCCAGTGCTCGATGGGCTCCCTGCCGCGAGGGCATCTTGGCC
AGGGTACTGAACCGTGGTCGCACGGGATGGGGTTGGGGGGGTGTCTGTGC
GGAGTGTTGCGTGTGTACGCCTGGTGTGTGTATGATGCTGCTCGGCACCT
TGTGCATCGATCGCTCTCTCTAATAGCACCAGCTGACCAATGACAGGCAT
GCAGCGCTTTCCATAACCAAGGGGGGGGTACTGTTGCGTGTGCGTGTGCG
TGTGCGGGGGAGCCGGTTTGTATGGGGGCCGGCCGGCGGGCGCCTATGCT
CGGCAGCAGTTTCATGGCAGTTTCATGGTTTGGCTCTTTTCGTCTGGGCG
GCTTTTCTACAGCGGTATGACATGTGTTGCATGGGGGATATATCTTGGCG
TTGTCCGGACGTTTGTTGATCACAGATGGATCGTGGTTGGGGGTACGTGT
TTTAGATTTTTTGATGCAAATCTAGCCCGGTTCTCATTTTAGGTTGTGTC
GATCTTCGTAGGTCGGGTCTTCGTACGCAGGTCTTCGTAGATCTTTGTCG
GGCTGCTTCGTTGTCGATTGTGTTGAACGAGACTAAGCCGGACTGCGAGT
ACGAGCCATACGGCCATGTCTCTGTTTCTCGCAACTGATTTTCTCGCGGC
CACTGCTCTCTGTTGTGCTGCTGCATCTCTATCGTCGTGCAGGGAGTTGG
ATCCGGTAACCGAGCCCTCCGCAGCTCCAGTGATGGTCGAGGATGTGCTC
GACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11460:4062..5217+

>mRNA_L-elsbetiae_contig11460.1281.1 ID=mRNA_L-elsbetiae_contig11460.1281.1|Name=mRNA_L-elsbetiae_contig11460.1281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig11460:4062..5217+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGCAGCCCAAGCACCGGCAGCGGCATGATGAACAGACCGACCAG
GCCGCCGCCGGTGTACGAGCTGTCCTTCGGCGTCGAGGCCAAGCTCGGCC
ACGGGGAGGTGATCTACGTTTGCGGCTCCTGCCCCTCCCTGGGCGCCAAG
GACCCCTCCCGCGCGCTCCGCCTGGTGACAGACCCGTCCAGCTACCCCGT
GTGGAGCTCCGACCCGGTCCCGGTGCCCCTGGACAAGAAGGTCACCTACC
GGTACTGCGTGGTGGCAGGAGGAAAGCTTAAGCGGTGGGAAGACATCTCT
GTAGACAGATGGTGGGCAGCCCAAGCACCGGCAGCGGCATGATGAACAGA
CCGACCAGGCCGCCGCCGGTGTACGAGCTGTCCTTCGGCGTCGAGGCCAA
GCTCGGCCACGGGGAGGTGATCTACGTTTGCGGCTCCTGCCCCTCCCTGG
GCGCCAAGGACCCCTCCCGCGCGCTCCGCCTGGTGACAGACCCGTCCAGC
TACCCCGTGTGGAGCTCCGACCCGGTCCCGGTGCCCCTGGACAAGAAGGT
CACCTACCGGTACTGCGTGGTGGCAGGAGGAAAGCTTAAGCGGTGGGAAG
ACATCTCTGTAGACAGGGAGTTGGATCCGGTAACCGAGCCCTCCGCAGCT
CCAGTGATGGTCGAGGATGTGCTCGACAAGGGAGTTGGATCCGGTAACCG
AGCCCTCCGCAGCTCCAGTGATGGTCGAGGATGTGCTCGACAAG
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