mRNA_L-elsbetiae_contig1145.1271.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1145.1271.1
Unique NamemRNA_L-elsbetiae_contig1145.1271.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1145.1271.1 vs. uniprot
Match: A0A6H5K9E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E5_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 4.730e-58
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:    1 LDARFSVRVNAFSLLLPQDSRDARTNVIMAQCSALSLDMKSGSAFEALAVDVTDFSVAPCVQHREAPDAAIVSCGRLHEAGIAVALRGPVPELLGVIRQGFPLKDLDLFPIPERRIILPVN 363
            LDARFSVRV+AFSL+LPQDSRDARTNV+MAQCSAL LDMKSGSAFEALAV V DFSVAPCVQ  EA DAAIVSCGRLHE G+A+ALRGP PELL VI +GFPLKDLDLFPIPERRIILPV 
Sbjct:  985 LDARFSVRVDAFSLILPQDSRDARTNVVMAQCSALVLDMKSGSAFEALAVSVCDFSVAPCVQRLEASDAAIVSCGRLHETGVAIALRGPQPELLEVIHRGFPLKDLDLFPIPERRIILPVK 1105
[Close]
BLAST of mRNA_L-elsbetiae_contig1145.1271.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.760e-48
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:   46 LPQDSRDARTNVIMAQCSALSLDMKSGSAFEALAVDVTDFSVAPCVQHREAPDAAIVSCGRLHEAGIAVALRGPVPELLGVIRQGFPLKDLDLFPIPERRIILPVN 363
            + +DSRDARTNV+MAQCSAL+LDMKSGSAFEALAV V DFSVAPCVQ  EA DAAIVSCGRLHE G+A+ALRGP+PELL VI +GFPLKDLDLFPIPERRIILPV 
Sbjct:  941 IDKDSRDARTNVVMAQCSALALDMKSGSAFEALAVSVCDFSVAPCVQRPEASDAAIVSCGRLHETGVAIALRGPLPELLEVIHRGFPLKDLDLFPIPERRIILPVK 1046
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1145.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9E5_9PHAE4.730e-5885.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB75_ECTSI1.760e-4883.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1145contigL-elsbetiae_contig1145:10318..12404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue5.6e-43
Seed eggNOG ortholog2880.D8LB75
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K02183,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04144,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00970,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04144,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5043@1,COG5126@1,KOG0027@2759,KOG1809@2759
EC6.1.1.5
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko03036,ko04131,ko04147
Exons3
Model size363
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1145.1271.1prot_L-elsbetiae_contig1145.1271.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1145 10318..12404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815351.4991634-CDS-L-elsbetiae_contig1145:10317..104101622815351.4991634-CDS-L-elsbetiae_contig1145:10317..10410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 10318..10410 +
1691682855.484231-CDS-L-elsbetiae_contig1145:10317..104101691682855.484231-CDS-L-elsbetiae_contig1145:10317..10410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 10318..10410 +
1622815351.5115712-CDS-L-elsbetiae_contig1145:11290..115091622815351.5115712-CDS-L-elsbetiae_contig1145:11290..11509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 11291..11509 +
1691682855.4992301-CDS-L-elsbetiae_contig1145:11290..115091691682855.4992301-CDS-L-elsbetiae_contig1145:11290..11509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 11291..11509 +
1622815351.523816-CDS-L-elsbetiae_contig1145:12353..124041622815351.523816-CDS-L-elsbetiae_contig1145:12353..12404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 12354..12404 +
1691682855.5078325-CDS-L-elsbetiae_contig1145:12353..124041691682855.5078325-CDS-L-elsbetiae_contig1145:12353..12404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 12354..12404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1145.1271.1

>prot_L-elsbetiae_contig1145.1271.1 ID=prot_L-elsbetiae_contig1145.1271.1|Name=mRNA_L-elsbetiae_contig1145.1271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
LDARFSVRVNAFSLLLPQDSRDARTNVIMAQCSALSLDMKSGSAFEALAV
DVTDFSVAPCVQHREAPDAAIVSCGRLHEAGIAVALRGPVPELLGVIRQG
FPLKDLDLFPIPERRIILPVN
back to top

mRNA from alignment at L-elsbetiae_contig1145:10318..12404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1145.1271.1 ID=mRNA_L-elsbetiae_contig1145.1271.1|Name=mRNA_L-elsbetiae_contig1145.1271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2087bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:10318..12404+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGACGCCCGGTTCTCGGTCCGGGTAAACGCCTTCTCTCTCCTGCTGCC
GCAGGACTCGCGCGACGCGCGCACTAATGTTATCATGGCTCAGGTGTGTA
AAGGAGAGGGGCCGCGACGAGGGGGAGGGGGTCTCAGGGGCTCCATCTGT
GTCCGTTGTTTTAGATACATAGACAAATTGGTCTCTGGGAACTCCTGTTC
CGAAATCTGAATCAGTAGGCTATCGGCCTCCACTAGCCCCAAAACACGTC
AGTATGACAGCAGTTGTTTTGAGCATGGCAGCACATGCCAGTAGACTGGA
CAGCTTTGTACCTGATTAGCACAGACCGGCACAGCTCTGTTTGGTTCAAG
GGAGCGGCAGCACAGAAAAGAAGCAGTTGTTTATTTGTTTAGTTGCACAG
CAGCTGCTGCTTCGGTGCTCGAAACACAGCAGCAGCTGCTGTTTTTTTTC
AGTTGTAAATTTAGGAGTACTTGTGCTGATGCCGTCGCCTGTTTGCTTTG
GTCTTGCATCACCCCCTGCCGCTGTGCTCTCATGAGCTCGCTCCGAAGTT
ATCTTGTATGTATAAGTACATTCGTAAAATTAGCTTTTGACGTTGTGTTT
GACGAGCCACGTTTTGTCTTTACAACAAGGATGACGTGTCGGATGAGCTG
TTAAGTTTAAGTTCCCCCCTTTTGCTTGGCCAGTTGGTTGGAGGAGCGGC
ACGGGCTTGAGCCTCACGAATGGCTAGCTCTCGGCGAGTTTAGAACTCAA
ACCCAGCATGGTGTTTGTGCTCGTCAACAGAATCGCACCATCTGGCTCGA
TTTATTTCGCTATTTTTGGCTCTCTTCGTCGCTATTGCACTACAGTTACG
TCAGTACCGGACGCCTTCCATGAAGTCAAATATTTGATCACGGTGTTGTG
CAACAACCTCTCCCGTGTGTTTACTTACACCCCCCCCCCTCCTCTCGCTT
TTCTCCGTTGAATCCACAACCAGTGCTCCGCGTTGTCTCTGGACATGAAG
AGCGGCAGCGCTTTCGAGGCCCTGGCTGTAGACGTGACCGACTTCTCCGT
CGCGCCCTGCGTCCAGCACCGGGAGGCTCCCGACGCCGCCATTGTTTCGT
GCGGCCGGCTACACGAGGCGGGGATTGCGGTCGCCCTTCGCGGGCCGGTG
CCTGAGCTGCTGGGGGTGATTCGCCAGGGATTCCCGCTCAAGGTACCGTA
TACGACACAAGATAGATAACACACCCCCTGGACCGATTTTCAAAGCTCAA
GAGTAATGTACTCCACACCGAGAAGAAGAGTTGTCAGTCCCGAAAAGGGC
GGCGTTAGAAAGATCTCATCAAGAGCTGTCCGAAAACGTGTCGTTTGGTG
TTAGGACCATAAATAGTCGTTGCGGAGTAACCGAGCTTTGAAAATGGGTC
CATGAGGTGTGTTATCTTGTGTCACATGCGGCATACAGTAGTACCTGCTG
CTGCCGCTGCTGTGTTGTTGTTGCTGTTGGCAGCAGCTCCATGTAGCTGT
TGGTGCCGTTGTTTTGTGTGACCGGCCAAGTTGTGTGTGTTTGTTGCTGC
TCGCGTTGTTTTTACGCCAAACGCTGACTATGGCGGTGGGTGCTGCCAGC
ACGATTTATTACACGGGGTGACTTTTGTTTGCAATGAGAGGCGCACCCTT
TCCCACGAAACCCAACAACAGTCGCTGGTCCCTTCGTCGTTTTTTTTCGG
TGAGACGGATCCGTCCTTCTTTGTTTATGCGCATATGTGCCCCAGCTGGA
AATAATGTGTAGAACGTAGACCGAGAACGCCACAGATCCATTGCCGGAGC
GGAGCTGCGTCGAGTTTGAAAGCAAGGCAAGAAGCATCGGTTGTGGTGGG
ATGGGAAGCCCCCCCAAGCCTCCTATCAATCCGACAAGAGAAAACAACCC
GCCCAGGGTCCAAACCTCTCGCAGCTACTACGGCGGTATCCGTCCAGCGA
TGTCCCACTCCGACTTTAAACCATTTGCTCCTGTACTTTTAATTTATACC
ACAACGTCTGTCCGATCGGAATGCGAACCAATTCAGGATCTGGACTTGTT
CCCTATTCCTGAGAGGAGAATCATTCTGCCGGTGAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1145:10318..12404+

>mRNA_L-elsbetiae_contig1145.1271.1 ID=mRNA_L-elsbetiae_contig1145.1271.1|Name=mRNA_L-elsbetiae_contig1145.1271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:10318..12404+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGACGCCCGGTTCTCGGTCCGGGTAAACGCCTTCTCTCTCCTGCTGCC
GCAGGACTCGCGCGACGCGCGCACTAATGTTATCATGGCTCAGCTGGACG
CCCGGTTCTCGGTCCGGGTAAACGCCTTCTCTCTCCTGCTGCCGCAGGAC
TCGCGCGACGCGCGCACTAATGTTATCATGGCTCAGTGCTCCGCGTTGTC
TCTGGACATGAAGAGCGGCAGCGCTTTCGAGGCCCTGGCTGTAGACGTGA
CCGACTTCTCCGTCGCGCCCTGCGTCCAGCACCGGGAGGCTCCCGACGCC
GCCATTGTTTCGTGCGGCCGGCTACACGAGGCGGGGATTGCGGTCGCCCT
TCGCGGGCCGGTGCCTGAGCTGCTGGGGGTGATTCGCCAGGGATTCCCGC
TCAAGTGCTCCGCGTTGTCTCTGGACATGAAGAGCGGCAGCGCTTTCGAG
GCCCTGGCTGTAGACGTGACCGACTTCTCCGTCGCGCCCTGCGTCCAGCA
CCGGGAGGCTCCCGACGCCGCCATTGTTTCGTGCGGCCGGCTACACGAGG
CGGGGATTGCGGTCGCCCTTCGCGGGCCGGTGCCTGAGCTGCTGGGGGTG
ATTCGCCAGGGATTCCCGCTCAAGGATCTGGACTTGTTCCCTATTCCTGA
GAGGAGAATCATTCTGCCGGTGAACGATCTGGACTTGTTCCCTATTCCTG
AGAGGAGAATCATTCTGCCGGTGAAC
back to top