mRNA_L-elsbetiae_contig1145.1268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1145.1268.1
Unique NamemRNA_L-elsbetiae_contig1145.1268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1145.1268.1 vs. uniprot
Match: A0A6H5K9E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.100e-22
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:   25 GKESDEESPSVSVSSWQGEAMPLSLQTKGPEEDAQLESLLYYAAQQSAHAGAEGPVLMEIDIRMSAQAVTLLVFHPPPDS 264
            G ESDEE+PS+S  S Q EA   SL T GPEEDA+LE+LLYYAAQ+SA+AGAE PVLMEIDIRMSAQ V+LLV+HPP D+
Sbjct:  569 GAESDEEAPSIS--SGQSEAPLPSLPTDGPEEDARLEALLYYAAQESAYAGAENPVLMEIDIRMSAQDVSLLVYHPPCDN 646
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BLAST of mRNA_L-elsbetiae_contig1145.1268.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.920e-22
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   31 ESDEESPSVSVSSWQGEAMPLSLQTKGPEEDAQLESLLYYAAQQSAHAGAEGPVLMEIDIRMSAQAVTLLVFHPPPDSNNDKKRPGKKAANA 306
            ESDEE+PS+S  S Q EA   SL T GPEED +LE+LLYYAAQ+SA+AGAE PVLMEIDIRMSAQ V+LLV+HPP D+N   K  GK  A++
Sbjct:  546 ESDEEAPSIS--SGQSEAPLPSLPTDGPEEDTRLEALLYYAAQESAYAGAENPVLMEIDIRMSAQDVSLLVYHPPCDNN---KSAGKSKASS 632
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1145.1268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9E5_9PHAE2.100e-2272.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB75_ECTSI2.920e-2266.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1145contigL-elsbetiae_contig1145:7926..8985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog2880.D8LB75
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K02183,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04144,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00970,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04144,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5043@1,COG5126@1,KOG0027@2759,KOG1809@2759
EC6.1.1.5
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko03036,ko04131,ko04147
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815351.341001-CDS-L-elsbetiae_contig1145:7925..80841622815351.341001-CDS-L-elsbetiae_contig1145:7925..8084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 7926..8084 +
1691682855.4155989-CDS-L-elsbetiae_contig1145:7925..80841691682855.4155989-CDS-L-elsbetiae_contig1145:7925..8084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 7926..8084 +
1622815351.356136-CDS-L-elsbetiae_contig1145:8817..89851622815351.356136-CDS-L-elsbetiae_contig1145:8817..8985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 8818..8985 +
1691682855.4297783-CDS-L-elsbetiae_contig1145:8817..89851691682855.4297783-CDS-L-elsbetiae_contig1145:8817..8985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 8818..8985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1145.1268.1prot_L-elsbetiae_contig1145.1268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1145 7926..8985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1145.1268.1

>prot_L-elsbetiae_contig1145.1268.1 ID=prot_L-elsbetiae_contig1145.1268.1|Name=mRNA_L-elsbetiae_contig1145.1268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
GAEEEGDDGKESDEESPSVSVSSWQGEAMPLSLQTKGPEEDAQLESLLYY
AAQQSAHAGAEGPVLMEIDIRMSAQAVTLLVFHPPPDSNNDKKRPGKKAA
NAGGTGKAD
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mRNA from alignment at L-elsbetiae_contig1145:7926..8985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1145.1268.1 ID=mRNA_L-elsbetiae_contig1145.1268.1|Name=mRNA_L-elsbetiae_contig1145.1268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1060bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:7926..8985+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTGAGGAAGAAGGAGATGATGGCAAAGAGTCCGACGAGGAATCTCC
GTCGGTGTCGGTGTCGTCCTGGCAGGGCGAGGCCATGCCACTGTCCCTGC
AGACGAAGGGTCCCGAAGAAGACGCCCAGCTCGAGTCTCTCTTGTACTAC
GCGGCGCAGGTAAACTACATGCACACATACCCGGTGAAGGTAGTCTGTCT
CTCTCGTTGTTTGTTGTGTTGTGGTTCCGGCTGTCTTAGACACACGTTTT
GTGAACATTTCTTCTGCTCGTTTGGTTTTGGTGTTTTTTGTTGGTGGGCT
TTGGTTGATGTGTTGGTGGGGTTATGTTACATTACATTGTTCCACCGCTA
TTCGATGGCTTACTCTCTGCAGATCGGTCGGTTTGCTCAGAATTTCCTTT
CTGGTTGCCAGGCAACGTGCGGACTCATGGTTGATGACATGCAACGGCAT
GACGGTGCTTGTTACCTACGGGTTTGTCATTGTCGATTTATTTCGTCGAG
TTCGGAACGGGTCGAAAGTGCCTACTTGCTATCTCTGAGTGGTGTGTTGA
AACGCTTGCGATGCCCACGGATGTCGAAAAGGGTAGTGGGTAGAGTTTGA
ATCCAACAACGTAGTCGAGTATGGAAACAGGCAAGGCTCATGTTTCAACG
ATGTGCATAACTAGATCCAGCACTGCTTGCCTTGTGGACTCCCCCTCGTC
GCCCGGCCATCAGCCGAGAACTTGAAAAGGCCTCACCGATAACAGCCCTG
CACGCCGTCTCCCGAACGGAGGTGGGCATGCATCGGGTAATCAACCAACG
CGAGGGAACAATGAACACAACCCCTCTCTACATCTTGTTTGTGCTTTGCC
GCGTGACTTCCCTACCCCCCTCTCCCTCGCTGCCGTCGTCAGCAATCCGC
GCACGCGGGCGCAGAGGGGCCCGTGCTGATGGAGATCGACATTCGCATGT
CCGCGCAAGCCGTGACTCTCCTGGTTTTCCACCCGCCCCCCGACAGCAAC
AACGACAAGAAACGCCCGGGCAAGAAAGCCGCCAACGCCGGCGGCACCGG
TAAGGCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1145:7926..8985+

>mRNA_L-elsbetiae_contig1145.1268.1 ID=mRNA_L-elsbetiae_contig1145.1268.1|Name=mRNA_L-elsbetiae_contig1145.1268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:7926..8985+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTGAGGAAGAAGGAGATGATGGCAAAGAGTCCGACGAGGAATCTCC
GTCGGTGTCGGTGTCGTCCTGGCAGGGCGAGGCCATGCCACTGTCCCTGC
AGACGAAGGGTCCCGAAGAAGACGCCCAGCTCGAGTCTCTCTTGTACTAC
GCGGCGCAGGGGGCTGAGGAAGAAGGAGATGATGGCAAAGAGTCCGACGA
GGAATCTCCGTCGGTGTCGGTGTCGTCCTGGCAGGGCGAGGCCATGCCAC
TGTCCCTGCAGACGAAGGGTCCCGAAGAAGACGCCCAGCTCGAGTCTCTC
TTGTACTACGCGGCGCAGCAATCCGCGCACGCGGGCGCAGAGGGGCCCGT
GCTGATGGAGATCGACATTCGCATGTCCGCGCAAGCCGTGACTCTCCTGG
TTTTCCACCCGCCCCCCGACAGCAACAACGACAAGAAACGCCCGGGCAAG
AAAGCCGCCAACGCCGGCGGCACCGGTAAGGCCGACCAATCCGCGCACGC
GGGCGCAGAGGGGCCCGTGCTGATGGAGATCGACATTCGCATGTCCGCGC
AAGCCGTGACTCTCCTGGTTTTCCACCCGCCCCCCGACAGCAACAACGAC
AAGAAACGCCCGGGCAAGAAAGCCGCCAACGCCGGCGGCACCGGTAAGGC
CGAC
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