mRNA_L-elsbetiae_contig1144.1260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1144.1260.1
Unique NamemRNA_L-elsbetiae_contig1144.1260.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1144.1260.1 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 6.820e-5
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MIARDNGDSTYRVEFDDGDVEDRAPRCDIRIVAQATEET 117
            +I+ DNGD+TY+V+FDDGDV D APR DIR+++   EE+
Sbjct:   80 VISTDNGDATYKVDFDDGDVLDAAPRHDIRVLSWPHEES 118
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BLAST of mRNA_L-elsbetiae_contig1144.1260.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 6.920e-5
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MIARDNGDSTYRVEFDDGDVEDRAPRCDIRIVAQATEET 117
            +I+ DNGD+TY+V+FDDGDV D APR DIR+++ + EE+
Sbjct:   80 VISIDNGDATYKVDFDDGDVLDAAPRHDIRVLSWSHEES 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1144.1260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCV6_9PHAE6.820e-558.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKD5_ECTSI6.920e-558.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1144contigL-elsbetiae_contig1144:12812..13449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.845966-CDS-L-elsbetiae_contig1144:12811..131051622815350.845966-CDS-L-elsbetiae_contig1144:12811..13105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 12812..13105 -
1691682855.132506-CDS-L-elsbetiae_contig1144:12811..131051691682855.132506-CDS-L-elsbetiae_contig1144:12811..13105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 12812..13105 -
1622815350.8572931-CDS-L-elsbetiae_contig1144:13299..134491622815350.8572931-CDS-L-elsbetiae_contig1144:13299..13449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 13300..13449 -
1691682855.1425436-CDS-L-elsbetiae_contig1144:13299..134491691682855.1425436-CDS-L-elsbetiae_contig1144:13299..13449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 13300..13449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1144.1260.1prot_L-elsbetiae_contig1144.1260.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1144 12812..13449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1144.1260.1

>prot_L-elsbetiae_contig1144.1260.1 ID=prot_L-elsbetiae_contig1144.1260.1|Name=mRNA_L-elsbetiae_contig1144.1260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MIARDNGDSTYRVEFDDGDVEDRAPRCDIRIVAQATEETGTDDPKLPQNE
ALAPGNNGASGDHDSTHSTESFGVGQEILDPAGGENDHFRLGSGIGQREE
EQQDCAAHQSQDESSDGGAEREGRRSSSQKSSNGGEGRHQQQSDAGTG
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mRNA from alignment at L-elsbetiae_contig1144:12812..13449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1144.1260.1 ID=mRNA_L-elsbetiae_contig1144.1260.1|Name=mRNA_L-elsbetiae_contig1144.1260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=638bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:12812..13449- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAGCGAGAGACAACGGCGACTCCACTTACCGGGTAGAGTTCGACGA
TGGTGACGTTGAAGATAGAGCGCCCCGCTGTGATATACGCATCGTTGCCC
AGGCGACTGAAGAGACGGGGACTGACGATCCCAAGCTGCCTCAAAACGAG
GTATGGAGATACACGTGTACCCCGCAATTGGGGGAACAACGTGCTTGTAT
GTACGCACTACAAACAGCAGCTACCGTGGCCCCGCCTGTGCAACGGCACG
TAAGAATCAATGCATATCTTGTGTTACACATGTTTTGTCAAAAAGCATGT
TTGGTTCACCCAAACACGTTTCCATCTTGTCCACTGAACGCCAGGCGTTG
GCACCCGGAAATAATGGCGCTTCAGGTGACCACGACAGCACCCACAGCAC
GGAGAGTTTTGGAGTAGGGCAGGAAATACTCGACCCAGCCGGAGGAGAGA
ACGACCACTTTCGGCTCGGGAGCGGCATAGGGCAGCGGGAAGAAGAGCAG
CAGGACTGCGCAGCCCATCAGTCGCAGGATGAGAGCAGTGATGGGGGTGC
CGAGAGAGAGGGTCGTCGCAGCAGCTCACAAAAATCTTCAAACGGTGGCG
AAGGTAGACACCAGCAACAGAGTGACGCGGGGACGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1144:12812..13449-

>mRNA_L-elsbetiae_contig1144.1260.1 ID=mRNA_L-elsbetiae_contig1144.1260.1|Name=mRNA_L-elsbetiae_contig1144.1260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:12812..13449- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAGCGAGAGACAACGGCGACTCCACTTACCGGGTAGAGTTCGACGA
TGGTGACGTTGAAGATAGAGCGCCCCGCTGTGATATACGCATCGTTGCCC
AGGCGACTGAAGAGACGGGGACTGACGATCCCAAGCTGCCTCAAAACGAG
ATGATAGCGAGAGACAACGGCGACTCCACTTACCGGGTAGAGTTCGACGA
TGGTGACGTTGAAGATAGAGCGCCCCGCTGTGATATACGCATCGTTGCCC
AGGCGACTGAAGAGACGGGGACTGACGATCCCAAGCTGCCTCAAAACGAG
GCGTTGGCACCCGGAAATAATGGCGCTTCAGGTGACCACGACAGCACCCA
CAGCACGGAGAGTTTTGGAGTAGGGCAGGAAATACTCGACCCAGCCGGAG
GAGAGAACGACCACTTTCGGCTCGGGAGCGGCATAGGGCAGCGGGAAGAA
GAGCAGCAGGACTGCGCAGCCCATCAGTCGCAGGATGAGAGCAGTGATGG
GGGTGCCGAGAGAGAGGGTCGTCGCAGCAGCTCACAAAAATCTTCAAACG
GTGGCGAAGGTAGACACCAGCAACAGAGTGACGCGGGGACGGGAGCGTTG
GCACCCGGAAATAATGGCGCTTCAGGTGACCACGACAGCACCCACAGCAC
GGAGAGTTTTGGAGTAGGGCAGGAAATACTCGACCCAGCCGGAGGAGAGA
ACGACCACTTTCGGCTCGGGAGCGGCATAGGGCAGCGGGAAGAAGAGCAG
CAGGACTGCGCAGCCCATCAGTCGCAGGATGAGAGCAGTGATGGGGGTGC
CGAGAGAGAGGGTCGTCGCAGCAGCTCACAAAAATCTTCAAACGGTGGCG
AAGGTAGACACCAGCAACAGAGTGACGCGGGGACGGGA
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