mRNA_L-elsbetiae_contig1144.1258.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1144.1258.1
Unique NamemRNA_L-elsbetiae_contig1144.1258.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1144.1258.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 9.130e-26
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 3 
Query:    3 KVAENLSTLRMRQMALVRLCYGDSSLDMVQAITDLAEGYAKEGLWPQVSNHMARATHVLARDEGGPSANSGALVRVSRARFMGGGT 260
            +VAE+LSTLRM+Q+ALVRLCYGD+SL+MVQAI DLA+GYAKE LWPQVSNHMARA  +LARD+G     +G  +  +     GGGT
Sbjct:  384 QVAEDLSTLRMKQIALVRLCYGDASLEMVQAIADLADGYAKEDLWPQVSNHMARAADILARDKGSRVPGNGFFITAT----PGGGT 465
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BLAST of mRNA_L-elsbetiae_contig1144.1258.1 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.210e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 3 
Query:   39 QMALVRLCYGDSSLDMVQAITDLAEGYAKEGLWPQVSNHMARATHVLARD 188
            Q+ALVRLCYGD+SL+MVQAI DLA+GYAKE LWPQ SN +      L R+
Sbjct:  499 QIALVRLCYGDASLEMVQAIADLADGYAKEDLWPQASNSVVVGLSTLHRE 548
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BLAST of mRNA_L-elsbetiae_contig1144.1258.1 vs. uniprot
Match: A0A482RRR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRR4_9ARCH)

HSP 1 Score: 52.8 bits (125), Expect = 5.140e-6
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 3 
Query:   12 ENLSTLRMRQMALVRLCYGDSSLDMVQAITDLAEGYAKEGLWPQVSNHMARATHVLARDE 191
            E L   R R +A+V+LCYG SS+ MV+A  DLA  YA +G W Q   H+  A   L + E
Sbjct:    2 ERLVEGRARVIAMVKLCYGQSSVVMVRAYIDLANAYALQGQWQQAEEHIMTALEKLVQIE 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1144.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKD5_ECTSI9.130e-2665.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCV6_9PHAE2.210e-1266.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RRR4_9ARCH5.140e-645.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1144contigL-elsbetiae_contig1144:8896..10681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size263
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1144.1258.1prot_L-elsbetiae_contig1144.1258.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1144 8896..10649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.8860736-CDS-L-elsbetiae_contig1144:8895..90151622815350.8860736-CDS-L-elsbetiae_contig1144:8895..9015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 8896..9015 -
1691682855.1529238-CDS-L-elsbetiae_contig1144:8895..90151691682855.1529238-CDS-L-elsbetiae_contig1144:8895..9015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 8896..9015 -
1622815350.8946633-CDS-L-elsbetiae_contig1144:9908..100101622815350.8946633-CDS-L-elsbetiae_contig1144:9908..10010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 9909..10010 -
1691682855.1643682-CDS-L-elsbetiae_contig1144:9908..100101691682855.1643682-CDS-L-elsbetiae_contig1144:9908..10010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 9909..10010 -
1622815350.9048717-CDS-L-elsbetiae_contig1144:10640..106491622815350.9048717-CDS-L-elsbetiae_contig1144:10640..10649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 10641..10649 -
1691682855.174294-CDS-L-elsbetiae_contig1144:10640..106491691682855.174294-CDS-L-elsbetiae_contig1144:10640..10649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 10641..10649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.9139376-UTR-L-elsbetiae_contig1144:10649..106811622815350.9139376-UTR-L-elsbetiae_contig1144:10649..10681Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1144 10650..10681 -
1691682855.1834621-UTR-L-elsbetiae_contig1144:10649..106811691682855.1834621-UTR-L-elsbetiae_contig1144:10649..10681Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1144 10650..10681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1144.1258.1

>prot_L-elsbetiae_contig1144.1258.1 ID=prot_L-elsbetiae_contig1144.1258.1|Name=mRNA_L-elsbetiae_contig1144.1258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MRQMALVRLCYGDSSLDMVQAITDLAEGYAKEGLWPQVSNHMARATHVLA
RDEGGPSANSGALVRVSRARFMGGGTA
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mRNA from alignment at L-elsbetiae_contig1144:8896..10681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1144.1258.1 ID=mRNA_L-elsbetiae_contig1144.1258.1|Name=mRNA_L-elsbetiae_contig1144.1258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1786bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:8896..10681- (Laminarionema elsbetiae ELsaHSoW15)
GCAAGGTGGCCGAAAACCTGTCGACCCTGCGCATGCGGCAGGCAAGGAGA
TGATGGTTTTTACTCTCTCGGCGGCTTGTTTTTCGGTTTCATTTCGAGAC
GACGACCTTTAGTTCTTGTTTTCGCGAGCAAAACAATACATAAAATATAT
GGCATTGTGTCTGAGGGAGTCGAGGTGGATCGGGGAGATAGGGCCACCTG
CCTCGACATATCAGGATCTGAGCAGGTTTACAGCAGGTATGTTGCGGACA
AGGAGGGATACTCGCGGGAAGACCTTGGCCGCCCGGCAGTTTCAATGCCG
TCGATGCAACTCGTAAGCATTGGCGGTTACGTGTCGGTTCGACGGTCCAT
TGGGTGTTCTAACTTTGGCCCCAGGATCTGTGTTTGCCTCCCGAGGACCC
TCTCTCTCTCTCTCTCTCTCTCTATCTCTCTTTGTTCTCTCCGACAATAC
AACAATCCATTGACATACTGCTCGATCATACTAACCGGTGCGAGGGTAAG
GAACAAACGCCGAGCCCAGCGGCTGCAGCAGCAGCAGCAGCAGCAGTGCC
CGTACCCAACCCAGCTTTTACCGCACGGCCTCTTGGTATGTATGTAAAAA
GCACCGCTGCGCTTCATTTTGGTGTAACTCTCTCTCTCTCTCGCTCTCTC
TCTCTCTCTGGCGGTTCCCAGATGGCCCTGGTCCGGCTGTGCTACGGAGA
CTCTTCCCTAGATATGGTGCAGGCCATTACCGACCTCGCAGAGGGCTACG
CGAAAGAGGGCCTCTGGCCTCAGGTAAGAGAAGTATCTGCTGCTACTTAT
AAGCTTGGTGATCCGGTGGTTGTTTCTCTTGGGGCGATGCCCTCTCGTCC
CAACTGTCGCCAAAATGCCCTCCTCTATATCTTTCTATACTTGTTCTCCT
CCCATTATTTGTATATTCGCCGTCTGCTCCACTGGCCCCCATACTCCACT
ACGACTAGCTAGACGACCCAACCGGGGCTACACAGGAGGGGGAGGGGGGT
GGACCCCCTCTTGCGGTGCCTGCCTTAGATGTTTTTCTCTATGGGCACCT
GGATATAACCGAGATCGTTTGGGACCGGACACAGCTATTTTCCGGGCTTG
GGCAACCTTGGTGAAACGAGAGAATCTCCACCATCAACCTTTCGGTGCAT
ATTGTACTAGATATTTTAAGGGGGCAGGGAGCGTGTAAGCTAAAAACGAG
GGGTGCCGATCAATCGTCAATGCTGCGTGCATGACGGGGGAAACATTTTG
CTTTGTTTCTTCCTCCCATTGTTGGCTTTTTCGTCGTCTGCCCCACTGGA
CCCCTTCCTTCACTGCGACTATTTAGCTAGACTAGATTCGATATCTCTTC
TGTTGTTGCTTTGCTGGTCCTTCGGGTCCATTTATTTTTCGTGTACCTTC
TCTTGGGTATAAGTTAGCCTGTGACCACGGGAATTGACCGCATCAAGTGT
TGGGTTAGTGCGGACATCGAGAGGTACTGGATGGAGAGATCGGAACGGTT
TTTAATGTGAAGACAACATACATACAACATACACCCAAACGGGATCACGC
AGGATAGGGGGGGGGGTGGACCCGGTGGACACCCCCTCGTGTGGTGCCTG
CCTGCTTATGCTTTTATCGCGAAACATGATACGACGTGTCGGCGCGAATC
AATCTACCGGCTCAAGGTGTCCAACCACATGGCGAGGGCCACCCACGTCC
TCGCCCGGGATGAGGGCGGGCCCTCGGCGAACAGCGGCGCTTTGGTCAGG
GTTTCTCGAGCCCGTTTTATGGGTGGCGGCACGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1144:8896..10681-

>mRNA_L-elsbetiae_contig1144.1258.1 ID=mRNA_L-elsbetiae_contig1144.1258.1|Name=mRNA_L-elsbetiae_contig1144.1258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:8896..10681- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCAGATGCGGCAGATGGCCCTGGTCCGGCTGTGCTACGGAGACTC
TTCCCTAGATATGGTGCAGGCCATTACCGACCTCGCAGAGGGCTACGCGA
AAGAGGGCCTCTGGCCTCAGATGGCCCTGGTCCGGCTGTGCTACGGAGAC
TCTTCCCTAGATATGGTGCAGGCCATTACCGACCTCGCAGAGGGCTACGC
GAAAGAGGGCCTCTGGCCTCAGGTGTCCAACCACATGGCGAGGGCCACCC
ACGTCCTCGCCCGGGATGAGGGCGGGCCCTCGGCGAACAGCGGCGCTTTG
GTCAGGGTTTCTCGAGCCCGTTTTATGGGTGGCGGCACGGCCGTGTCCAA
CCACATGGCGAGGGCCACCCACGTCCTCGCCCGGGATGAGGGCGGGCCCT
CGGCGAACAGCGGCGCTTTGGTCAGGGTTTCTCGAGCCCGTTTTATGGGT
GGCGGCACGGCC
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