mRNA_L-elsbetiae_contig1144.1257.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1144.1257.1
Unique NamemRNA_L-elsbetiae_contig1144.1257.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1144.1257.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 8.400e-6
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 KVMEGVQPKQAARVRLAFQAADPESEGCADAELL 102
            K+MEGVQ KQAA+VRLAFQA DP+  GCA++E+L
Sbjct:  599 KIMEGVQQKQAAKVRLAFQAVDPDGTGCAESEIL 632
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1144.1257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKD5_ECTSI8.400e-670.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1144contigL-elsbetiae_contig1144:4008..5189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1144.1257.1prot_L-elsbetiae_contig1144.1257.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1144 4008..5183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.7378097-CDS-L-elsbetiae_contig1144:4007..42111622815350.7378097-CDS-L-elsbetiae_contig1144:4007..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 4008..4211 -
1691682855.0808532-CDS-L-elsbetiae_contig1144:4007..42111691682855.0808532-CDS-L-elsbetiae_contig1144:4007..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 4008..4211 -
1622815350.7484064-CDS-L-elsbetiae_contig1144:5093..51831622815350.7484064-CDS-L-elsbetiae_contig1144:5093..5183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 5094..5183 -
1691682855.0926757-CDS-L-elsbetiae_contig1144:5093..51831691682855.0926757-CDS-L-elsbetiae_contig1144:5093..5183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 5094..5183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.759308-UTR-L-elsbetiae_contig1144:5183..51891622815350.759308-UTR-L-elsbetiae_contig1144:5183..5189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1144 5184..5189 -
1691682855.1030896-UTR-L-elsbetiae_contig1144:5183..51891691682855.1030896-UTR-L-elsbetiae_contig1144:5183..5189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1144 5184..5189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1144.1257.1

>prot_L-elsbetiae_contig1144.1257.1 ID=prot_L-elsbetiae_contig1144.1257.1|Name=mRNA_L-elsbetiae_contig1144.1257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MEGVQPKQAARVRLAFQAADPESEGCADAELLLGELHASFSRNDGNFLEA
LHPGLLSAVADIAEATTPKDDGDHQAQDGLPVPSGRGGVRSPPITWEE
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mRNA from alignment at L-elsbetiae_contig1144:4008..5189-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1144.1257.1 ID=mRNA_L-elsbetiae_contig1144.1257.1|Name=mRNA_L-elsbetiae_contig1144.1257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:4008..5189- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTCATGGAGGGTGTCCAGCCGAAGCAGGCCGCACGAGTTCGACTGGC
GTTTCAAGCGGCGGATCCGGAGAGCGAAGGCTGCGCCGACGCCGAGGTGA
CGCAGACCAGAATTCCAGCAGTGCATGGCGGCCAGACGTAGATGTTCGAT
GCGAATCAAGCGGCGGGCGGCCTCAGCAGAAGTATCAAGTACATATAGGC
AGGCCGGCACCGTTGCCCCCTCCCCTTCCTCCTGTGTGACCCCGATTGGG
CCATCTAGCTAGCCAGTCGTAGTGGAGGAAGGGGGCTATCGGGGGAGACG
ACGAGACGAATGAGCCAATAATGGGAAGAAGAAGAACACAGCTCGACATG
ATGCTGTCAGCCACAGCCCATGATGATGTTGACGTCTTCCAGATATTATG
TAGAAGTATTTTTGGTTTCAAGACGCACTGCACTTCACCTCGTGGGAAAT
CGATGGGTTTTCTCCCCGGAATACGTGTTGGCTGACCAGGCAGAAAACTC
TGCAGGGGAGGGAGATGTTGAACTCTTCCGACATTTTACGTGTTTTTTTT
CTACTCGGCCGGACCAAACACTACGTCACTATATGGAATACTGGTTGAAT
TCCACGGAGTCCCGTCTCAGATGCGGGCTGTAAGGTTCCGTTCATGGTTA
TCTGATCTATCTTTCAAAATGGGTGCGGCGCTGACAAAACATATTCTTCA
TCTCTTTTTTGAAGCGTGTGTGTGTGTGTTTTTCGTGCGCGGATAGAAAC
ATGGGAGGTTGATTGTGCGCGGCTGCACAACACGATGTGCGGGACAACAA
AACGCTCTCACGGAAAACCGTCAGAGAGACACGGCGCCGTCTGTGTACAC
CCATGTAGCGCCCTATCTATATGCGAACCGTCCGGCTTGCCCCCCCCGCT
CCGCAAGCAACATCGAGCGCGACTGAAAAAAAGCTTATTCTCTCGCTACC
CCCCCCCCCCGCACCCCCTCCTCCGCAGCTCCTTCTTGGCGAGCTCCACG
CGAGCTTCAGCCGCAACGACGGCAACTTTCTCGAGGCGTTACATCCGGGC
CTCCTGTCGGCAGTGGCGGACATTGCCGAAGCCACCACCCCCAAGGACGA
TGGTGACCATCAGGCCCAAGACGGGCTCCCTGTACCCAGCGGACGGGGGG
GGGTGCGTTCGCCGCCGATAACGTGGGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1144:4008..5189-

>mRNA_L-elsbetiae_contig1144.1257.1 ID=mRNA_L-elsbetiae_contig1144.1257.1|Name=mRNA_L-elsbetiae_contig1144.1257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:4008..5189- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGTGTCCAGCCGAAGCAGGCCGCACGAGTTCGACTGGCGTTTCA
AGCGGCGGATCCGGAGAGCGAAGGCTGCGCCGACGCCGAGATGGAGGGTG
TCCAGCCGAAGCAGGCCGCACGAGTTCGACTGGCGTTTCAAGCGGCGGAT
CCGGAGAGCGAAGGCTGCGCCGACGCCGAGCTCCTTCTTGGCGAGCTCCA
CGCGAGCTTCAGCCGCAACGACGGCAACTTTCTCGAGGCGTTACATCCGG
GCCTCCTGTCGGCAGTGGCGGACATTGCCGAAGCCACCACCCCCAAGGAC
GATGGTGACCATCAGGCCCAAGACGGGCTCCCTGTACCCAGCGGACGGGG
GGGGGTGCGTTCGCCGCCGATAACGTGGGAGGAGCTCCTTCTTGGCGAGC
TCCACGCGAGCTTCAGCCGCAACGACGGCAACTTTCTCGAGGCGTTACAT
CCGGGCCTCCTGTCGGCAGTGGCGGACATTGCCGAAGCCACCACCCCCAA
GGACGATGGTGACCATCAGGCCCAAGACGGGCTCCCTGTACCCAGCGGAC
GGGGGGGGGTGCGTTCGCCGCCGATAACGTGGGAGGAG
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