mRNA_L-elsbetiae_contig11431.1250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11431.1250.1
Unique NamemRNA_L-elsbetiae_contig11431.1250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11431.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11431contigL-elsbetiae_contig11431:5136..5318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_008290.1
Exons1
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.3252654-CDS-L-elsbetiae_contig11431:5135..53181622815350.3252654-CDS-L-elsbetiae_contig11431:5135..5318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11431 5136..5318 -
1691682854.861948-CDS-L-elsbetiae_contig11431:5135..53181691682854.861948-CDS-L-elsbetiae_contig11431:5135..5318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11431 5136..5318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11431.1250.1prot_L-elsbetiae_contig11431.1250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11431 5136..5318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11431.1250.1

>prot_L-elsbetiae_contig11431.1250.1 ID=prot_L-elsbetiae_contig11431.1250.1|Name=mRNA_L-elsbetiae_contig11431.1250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MAGSGLLRLLFLFTRDELHTRAGPTCRWRQSKDTSASPDSRISAYTASNS
SVHGFFPVTE*
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mRNA from alignment at L-elsbetiae_contig11431:5136..5318-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11431.1250.1 ID=mRNA_L-elsbetiae_contig11431.1250.1|Name=mRNA_L-elsbetiae_contig11431.1250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig11431:5136..5318- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGCTCTGGCCTCCTTCGCCTGTTGTTCCTTTTCACGCGCGACGA
GCTCCACACGCGGGCGGGTCCAACATGTCGGTGGCGACAAAGCAAAGACA
CCTCTGCATCTCCGGATTCCCGAATCAGCGCGTACACGGCTTCCAACTCG
TCCGTTCACGGCTTCTTTCCGGTTACAGAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11431:5136..5318-

>mRNA_L-elsbetiae_contig11431.1250.1 ID=mRNA_L-elsbetiae_contig11431.1250.1|Name=mRNA_L-elsbetiae_contig11431.1250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig11431:5136..5318- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGCTCTGGCCTCCTTCGCCTGTTGTTCCTTTTCACGCGCGACGA
GCTCCACACGCGGGCGGGTCCAACATGTCGGTGGCGACAAAGCAAAGACA
CCTCTGCATCTCCGGATTCCCGAATCAGCGCGTACACGGCTTCCAACTCG
TCCGTTCACGGCTTCTTTCCGGTTACAGAATGAATGGCTGGCTCTGGCCT
CCTTCGCCTGTTGTTCCTTTTCACGCGCGACGAGCTCCACACGCGGGCGG
GTCCAACATGTCGGTGGCGACAAAGCAAAGACACCTCTGCATCTCCGGAT
TCCCGAATCAGCGCGTACACGGCTTCCAACTCGTCCGTTCACGGCTTCTT
TCCGGTTACAGAATGA
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