mRNA_L-elsbetiae_contig11425.1245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11425.1245.1
Unique NamemRNA_L-elsbetiae_contig11425.1245.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11425.1245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11425contigL-elsbetiae_contig11425:2877..3653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size778
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.868084-CDS-L-elsbetiae_contig11425:2876..33081622815349.868084-CDS-L-elsbetiae_contig11425:2876..3308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11425 2877..3308 +
1691682854.4845228-CDS-L-elsbetiae_contig11425:2876..33081691682854.4845228-CDS-L-elsbetiae_contig11425:2876..3308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11425 2877..3308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.8770807-UTR-L-elsbetiae_contig11425:3308..36531622815349.8770807-UTR-L-elsbetiae_contig11425:3308..3653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11425 3309..3653 +
1691682854.498441-UTR-L-elsbetiae_contig11425:3308..36531691682854.498441-UTR-L-elsbetiae_contig11425:3308..3653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11425 3309..3653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11425.1245.1prot_L-elsbetiae_contig11425.1245.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11425 2877..3308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11425.1245.1

>prot_L-elsbetiae_contig11425.1245.1 ID=prot_L-elsbetiae_contig11425.1245.1|Name=mRNA_L-elsbetiae_contig11425.1245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
PAPPTPPYCCVPHVISPVTWWLREGCSGYCRKHRNLWCVDICVCERCEQS
PLCPTSFHACVCTLVHTTAKRVGQRTRPCSPSAQRYLTWTQNTKYAGELV
VSRIFSRICFHKWMLYLHIYIFSSTSLTDSATVCRAREKVSCV*
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mRNA from alignment at L-elsbetiae_contig11425:2877..3653+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11425.1245.1 ID=mRNA_L-elsbetiae_contig11425.1245.1|Name=mRNA_L-elsbetiae_contig11425.1245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=777bp|location=Sequence derived from alignment at L-elsbetiae_contig11425:2877..3653+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCACCCCCCACCCCCCCGTACTGCTGTGTTCCGCACGTGATTTCCCC
GGTCACTTGGTGGCTGAGGGAAGGATGCAGCGGATACTGCCGTAAGCATC
GAAATTTGTGGTGTGTAGATATTTGTGTGTGTGAGCGGTGCGAGCAATCG
CCTCTCTGCCCCACATCTTTCCACGCGTGTGTGTGTACACTTGTCCACAC
AACCGCCAAGCGAGTAGGGCAGAGGACACGCCCGTGTTCGCCCTCGGCTC
AACGTTACTTGACATGGACCCAAAATACAAAATACGCGGGGGAGCTGGTG
GTGTCGAGAATTTTCTCGAGAATTTGCTTTCACAAGTGGATGCTTTACCT
TCATATATATATATTTTCTTCCACATCTTTGACAGATTCTGCAACAGTAT
GTCGAGCACGCGAGAAAGTAAGTTGCGTATGAGGGCAGGGCGCGCACACG
CACCCAAAGAGGGACGACTGCTGTTCCAGCGCGCGATACAACCAGAGCGG
AGGTCGTCCTCTTAGACGAAACTTGGGCCTCAGCGTCTCACAAAAAGCCC
TGGCTTCTTCTGAAAGCACTGAATCATCGAATACCTCAGCCTCGCCCGGA
GCAAGCAGCTCCCGCGATGATCGACAGAGCCATCTTCTGTGTAGCAGCTG
CGCTCTCAGGCGACAACTATCATAGGCGACCCCTCATCGCCTGCAAGGCG
CGCGCGCGCGGGGGGGGAGGGGTACAGGCGCACGCATTTTTTTTTTCGTC
GCTCCTCGGCCGACATCATATTCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11425:2877..3653+

>mRNA_L-elsbetiae_contig11425.1245.1 ID=mRNA_L-elsbetiae_contig11425.1245.1|Name=mRNA_L-elsbetiae_contig11425.1245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig11425:2877..3653+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCACCCCCCACCCCCCCGTACTGCTGTGTTCCGCACGTGATTTCCCC
GGTCACTTGGTGGCTGAGGGAAGGATGCAGCGGATACTGCCGTAAGCATC
GAAATTTGTGGTGTGTAGATATTTGTGTGTGTGAGCGGTGCGAGCAATCG
CCTCTCTGCCCCACATCTTTCCACGCGTGTGTGTGTACACTTGTCCACAC
AACCGCCAAGCGAGTAGGGCAGAGGACACGCCCGTGTTCGCCCTCGGCTC
AACGTTACTTGACATGGACCCAAAATACAAAATACGCGGGGGAGCTGGTG
GTGTCGAGAATTTTCTCGAGAATTTGCTTTCACAAGTGGATGCTTTACCT
TCATATATATATATTTTCTTCCACATCTTTGACAGATTCTGCAACAGTAT
GTCGAGCACGCGAGAAAGTAAGTTGCGTATGACCCGCACCCCCCACCCCC
CCGTACTGCTGTGTTCCGCACGTGATTTCCCCGGTCACTTGGTGGCTGAG
GGAAGGATGCAGCGGATACTGCCGTAAGCATCGAAATTTGTGGTGTGTAG
ATATTTGTGTGTGTGAGCGGTGCGAGCAATCGCCTCTCTGCCCCACATCT
TTCCACGCGTGTGTGTGTACACTTGTCCACACAACCGCCAAGCGAGTAGG
GCAGAGGACACGCCCGTGTTCGCCCTCGGCTCAACGTTACTTGACATGGA
CCCAAAATACAAAATACGCGGGGGAGCTGGTGGTGTCGAGAATTTTCTCG
AGAATTTGCTTTCACAAGTGGATGCTTTACCTTCATATATATATATTTTC
TTCCACATCTTTGACAGATTCTGCAACAGTATGTCGAGCACGCGAGAAAG
TAAGTTGCGTATGA
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