mRNA_L-elsbetiae_contig11422.1243.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11422.1243.1
Unique NamemRNA_L-elsbetiae_contig11422.1243.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11422.1243.1 vs. uniprot
Match: D7G506_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G506_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.300e-64
Identity = 97/128 (75.78%), Postives = 107/128 (83.59%), Query Frame = 2 
Query:  167 IVTSIPKRFNCSRCAKCKYQSKGTFYCRVNQLHLLAPGWEDEDQRACWDPPLNFLKWLRNSGPVVGCETDQDVLELSLENPLFLAKFPWYRSAGWGPHMFDHPVLRENKPSA---AVGDG-GSDSDSG 538
            +VTSIP+RF CSRCAKCKYQSKGTFYCRVNQLHL+APGWED DQ A WDPP  FLKWLRN+GPVVGCETDQDVL+LSL NPLFL  FPWYRSAGW P M+D P+  EN+ +    AVG+G GSDSD G
Sbjct:    1 MVTSIPRRFKCSRCAKCKYQSKGTFYCRVNQLHLVAPGWEDADQTATWDPPRGFLKWLRNAGPVVGCETDQDVLDLSLRNPLFLDSFPWYRSAGWSPEMYDLPIFTENRSTPGNEAVGEGSGSDSDDG 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11422.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G506_ECTSI1.300e-6475.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11422contigL-elsbetiae_contig11422:271..3376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1321
Cds size1281
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11422.1243.1prot_L-elsbetiae_contig11422.1243.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11422 311..3376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.689986-UTR-L-elsbetiae_contig11422:270..3101622815349.689986-UTR-L-elsbetiae_contig11422:270..310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11422 271..310 +
1691682854.3195403-UTR-L-elsbetiae_contig11422:270..3101691682854.3195403-UTR-L-elsbetiae_contig11422:270..310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11422 271..310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.7018027-CDS-L-elsbetiae_contig11422:310..5021622815349.7018027-CDS-L-elsbetiae_contig11422:310..502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 311..502 +
1691682854.3291402-CDS-L-elsbetiae_contig11422:310..5021691682854.3291402-CDS-L-elsbetiae_contig11422:310..502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 311..502 +
1622815349.7127955-CDS-L-elsbetiae_contig11422:917..10551622815349.7127955-CDS-L-elsbetiae_contig11422:917..1055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 918..1055 +
1691682854.3437057-CDS-L-elsbetiae_contig11422:917..10551691682854.3437057-CDS-L-elsbetiae_contig11422:917..1055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 918..1055 +
1622815349.7219863-CDS-L-elsbetiae_contig11422:1810..18911622815349.7219863-CDS-L-elsbetiae_contig11422:1810..1891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 1811..1891 +
1691682854.3512642-CDS-L-elsbetiae_contig11422:1810..18911691682854.3512642-CDS-L-elsbetiae_contig11422:1810..1891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 1811..1891 +
1622815349.7311962-CDS-L-elsbetiae_contig11422:2506..33761622815349.7311962-CDS-L-elsbetiae_contig11422:2506..3376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 2507..3376 +
1691682854.3592741-CDS-L-elsbetiae_contig11422:2506..33761691682854.3592741-CDS-L-elsbetiae_contig11422:2506..3376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11422 2507..3376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11422.1243.1

>prot_L-elsbetiae_contig11422.1243.1 ID=prot_L-elsbetiae_contig11422.1243.1|Name=mRNA_L-elsbetiae_contig11422.1243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=427bp
MSASSEGGYETVEEDKPSQKKRRPIVDSESDPEDDTGRRRARIVTSIPKR
FNCSRCAKCKYQSKGTFYCRVNQLHLLAPGWEDEDQRACWDPPLNFLKWL
RNSGPVVGCETDQDVLELSLENPLFLAKFPWYRSAGWGPHMFDHPVLREN
KPSAAVGDGGSDSDSGIKFGGKGKGKAKAKVKTKASAMGRGGSGSSRMVR
MRAVPSSSSSSSSSSESSSSYSSSTRPPAAGRREKSRRRSRLSSGHSGSN
SSSGSSDSDSSDSSDSDSSGSDSSESSSPSPSPSPSKHGAAGKRGTSTQS
ASQKTTAAGQGKDGDFVRAAVSKSTTSASSAGLADDDARSDSDGYDSNDV
VVVSASASASATTPRPSASLSLLHALARRPSASSPPPPSSSKAGGSASGE
RGGGRRSPGGSSFRIEGSTVTTTGSGR
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mRNA from alignment at L-elsbetiae_contig11422:271..3376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11422.1243.1 ID=mRNA_L-elsbetiae_contig11422.1243.1|Name=mRNA_L-elsbetiae_contig11422.1243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3106bp|location=Sequence derived from alignment at L-elsbetiae_contig11422:271..3376+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTACGGGCGGATAATGGGACACACACCCCCTAGAGAGGATGAGCGCGA
GTAGCGAAGGCGGATACGAGACTGTTGAGGAAGACAAGCCCTCGCAGAAA
AAGCGACGCCCCATCGTAGACAGCGAAAGCGACCCCGAGGATGACACTGG
CCGTCGCCGTGCTCGCATAGTGACCTCCATCCCGAAGCGGTTCAATTGCT
CGAGGTGTGCCAAGTGCAAGTACCAGTCAAAGGTGAGACCTTTCCCCTGT
GTGCTGACGAAGGAGCGAGTGTTGATGTAAAGGAAGGAACCAGATCTTCC
CTATTTTTGCCGCGAGTGTTGTTTTAAAGGAGGGAACCAGATCTTCGCTG
TTATGCCGCCAGCTGCTCGTCCCGCAGAACTCGCGTATTGGGCAAGGTAG
ATCGCGCTCGCCGCCACAGTAGCACACCGGAAAGTTATCCCCACGCTACT
GCTGCACGTGAGTTCGAGGTAAACATAAATTTCATGCTTGATCAGGACCC
AGCAGACACTGGAAAACATCGAAAATGTACAATATTGTAGTCAATCCTAC
CGTCAAGTGGTGCAGGAGCTGGAGGCGAGAGGGTGTGCTGCGGTATCTTC
CGCACGCTCTCTCACTGAACGATTGCTGTTGTTACACGCCCACACAGGGA
ACGTTCTACTGCAGGGTGAACCAGCTTCACCTCCTGGCGCCGGGTTGGGA
GGATGAGGACCAGAGAGCGTGCTGGGATCCCCCACTCAACTTTCTGAAGT
GGCTCAGGAACTCCGGGCCGGTGGTCGGGTGTGAGGTACAATAGTATTGA
TTGATGTATTTGCAGGCAGGATAGAACAAGATACACGGGTTGCGAACTTC
TAAATCGTTGAGTTTGACGAAGAGAGCACGAGAGCAGATAGTAACTCCTA
ACTTTTTCAAATGCTCAAAATTAATCCTTTGTTGTGCCAGCGCATAACTG
GGTCGACGTCGGGGTTTTGTGACTCTCGATATTGCACTCTGTTTTTACGC
GAAAACAGTGACTAGATACATGTCTAACATTGCAACCTGTTGACCTTCTC
TATTCAGAACTGCAATCACGCAACTTAACCCCTGAAGAGAAGCGGGCCGT
GCGCGCGTGGATAGCGTAGGGGCCACCACCGCACGTGCCCGTATAGATGG
CACATATTGAAGATCCAGCCCCCCCCCCCCCCCTTTTTTTGGCCTACATA
AATACAGCATACATGTGTGTTCTAGATACATACATACTGAGCTTCCCTCT
CCCGCTGGTGGGCATCTACTTACTCCCGGTATTCCTCCCTTGTGGAGGAG
ATTAGTTGTCGCGAAGGCGCTTCGTCGTATTTCGCGTACATACATACATA
CATACATACATACATACATGCGTCGTTTTACTCTTTCTTGAGCGGCGTCG
AGTGTGCCCTGTTTTTGTGACCACGGGCCCCCATGGATGTTTTTGGACTA
GAGAGCTAATGTGAGAAGCAACAACAACAACGTACTCTGCTCCTTCCTCA
CACAACTCGTGTGATTTGTGCTGGGCGCTTTCCCTGGCAGACCGACCAGG
ATGTGCTGGAGCTATCGCTGGAGAACCCGCTCTTCTTGGCCAAATTCCCG
TGGTACCGTTCGGCCGGATGGGTAAGCTTGTCGGTCGATTCGCACAGGGC
GCGCGCAACTCCGAGATTGAGATCTGAGACACGACTTGTTTCCGACCGTT
TGCTTTGGGCTCCTCCCATCGTAGTCTGGCGTTGCTGTAGCCTACACGTT
ACTGCTATGGATCCGTATGTAGGCCTGCCACAAGCCCCTTTACCGCTGTA
CAAACAAACAGTAGTGGTGTGCACCTTTTGCGGTGGTACAGTTTTCTTTC
ATCGGCGTCGAGGACCTTTTTTGTCTTCGGCAGAACCGTTTCCAACTGCC
AGACAGAAGAAAAGAGCCCGAAAAGCGCGCATGATTTGTGCTTAGTAAAT
AGCGCGTCGCGCACAGGAATGCTGGCGGGCCATGGTACGAAACACTGGGC
AAAGCTTATATATCGGTTGGCATGACTTGATGCGCTACTGTAGCCCACCA
CCCCAAGCTCTCCGTGCCCTTATCTTTGCCTTGTTGACGGCACCGAACTT
GTGGACACCATGCCACTGCCTCGCGCAAGATGGGGCTATCCCTCCGCCCA
ACCCTCCTGCCGTGGTACTTTATTCAATCCTATACGTAAACACTGCTGGC
CTCGCCCTCTCTCCTGTTACATATCTCCCTACACAGGGCCCGCATATGTT
CGACCACCCGGTTTTGAGGGAGAACAAGCCGAGCGCCGCCGTCGGAGACG
GGGGCAGCGACAGCGACAGTGGCATCAAGTTTGGCGGCAAGGGCAAAGGA
AAAGCCAAGGCCAAGGTCAAGACCAAGGCCAGCGCCATGGGCCGGGGGGG
CAGCGGCAGCAGCAGGATGGTCCGCATGCGCGCGGTGCCTTCTTCTTCTT
CTTCTTCGTCGTCGTCGTCCGAGTCGTCCTCCTCTTACTCCTCATCGACG
CGGCCGCCCGCTGCCGGACGTAGGGAGAAGAGCCGAAGAAGGTCCCGCTT
GAGCAGCGGCCACAGCGGCAGCAACAGCAGCAGCGGAAGCAGCGACAGCG
ATAGCAGCGACAGCAGCGACAGCGATAGCAGCGGCAGCGACAGCAGCGAG
TCCTCTTCTCCCTCCCCCTCTCCCTCTCCCTCCAAGCACGGCGCCGCGGG
CAAGAGGGGCACGAGCACACAGAGCGCTTCACAGAAGACGACGGCAGCCG
GCCAAGGAAAGGACGGCGACTTCGTCCGAGCGGCCGTCTCGAAGAGCACC
ACTTCAGCGTCCTCCGCGGGGCTCGCCGACGACGACGCGAGAAGCGACAG
CGATGGTTACGATAGCAACGACGTCGTGGTCGTGAGCGCCAGCGCCAGCG
CCAGCGCTACCACCCCTCGACCGTCCGCGTCGTTGTCGCTCCTCCACGCC
CTCGCCCGGCGGCCTTCGGCGTCGTCGCCGCCGCCGCCTTCTTCTTCCAA
GGCTGGCGGGAGCGCCTCAGGCGAGCGAGGAGGGGGGAGGAGATCGCCGG
GAGGATCTTCCTTCCGAATCGAGGGGTCCACCGTTACCACCACCGGCAGC
GGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11422:271..3376+

>mRNA_L-elsbetiae_contig11422.1243.1 ID=mRNA_L-elsbetiae_contig11422.1243.1|Name=mRNA_L-elsbetiae_contig11422.1243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2562bp|location=Sequence derived from alignment at L-elsbetiae_contig11422:271..3376+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGCGAGTAGCGAAGGCGGATACGAGACTGTTGAGGAAGACAAGCC
CTCGCAGAAAAAGCGACGCCCCATCGTAGACAGCGAAAGCGACCCCGAGG
ATGACACTGGCCGTCGCCGTGCTCGCATAGTGACCTCCATCCCGAAGCGG
TTCAATTGCTCGAGGTGTGCCAAGTGCAAGTACCAGTCAAAGATGAGCGC
GAGTAGCGAAGGCGGATACGAGACTGTTGAGGAAGACAAGCCCTCGCAGA
AAAAGCGACGCCCCATCGTAGACAGCGAAAGCGACCCCGAGGATGACACT
GGCCGTCGCCGTGCTCGCATAGTGACCTCCATCCCGAAGCGGTTCAATTG
CTCGAGGTGTGCCAAGTGCAAGTACCAGTCAAAGGGAACGTTCTACTGCA
GGGTGAACCAGCTTCACCTCCTGGCGCCGGGTTGGGAGGATGAGGACCAG
AGAGCGTGCTGGGATCCCCCACTCAACTTTCTGAAGTGGCTCAGGAACTC
CGGGCCGGTGGTCGGGTGTGAGGGAACGTTCTACTGCAGGGTGAACCAGC
TTCACCTCCTGGCGCCGGGTTGGGAGGATGAGGACCAGAGAGCGTGCTGG
GATCCCCCACTCAACTTTCTGAAGTGGCTCAGGAACTCCGGGCCGGTGGT
CGGGTGTGAGACCGACCAGGATGTGCTGGAGCTATCGCTGGAGAACCCGC
TCTTCTTGGCCAAATTCCCGTGGTACCGTTCGGCCGGATGGACCGACCAG
GATGTGCTGGAGCTATCGCTGGAGAACCCGCTCTTCTTGGCCAAATTCCC
GTGGTACCGTTCGGCCGGATGGGGCCCGCATATGTTCGACCACCCGGTTT
TGAGGGAGAACAAGCCGAGCGCCGCCGTCGGAGACGGGGGCAGCGACAGC
GACAGTGGCATCAAGTTTGGCGGCAAGGGCAAAGGAAAAGCCAAGGCCAA
GGTCAAGACCAAGGCCAGCGCCATGGGCCGGGGGGGCAGCGGCAGCAGCA
GGATGGTCCGCATGCGCGCGGTGCCTTCTTCTTCTTCTTCTTCGTCGTCG
TCGTCCGAGTCGTCCTCCTCTTACTCCTCATCGACGCGGCCGCCCGCTGC
CGGACGTAGGGAGAAGAGCCGAAGAAGGTCCCGCTTGAGCAGCGGCCACA
GCGGCAGCAACAGCAGCAGCGGAAGCAGCGACAGCGATAGCAGCGACAGC
AGCGACAGCGATAGCAGCGGCAGCGACAGCAGCGAGTCCTCTTCTCCCTC
CCCCTCTCCCTCTCCCTCCAAGCACGGCGCCGCGGGCAAGAGGGGCACGA
GCACACAGAGCGCTTCACAGAAGACGACGGCAGCCGGCCAAGGAAAGGAC
GGCGACTTCGTCCGAGCGGCCGTCTCGAAGAGCACCACTTCAGCGTCCTC
CGCGGGGCTCGCCGACGACGACGCGAGAAGCGACAGCGATGGTTACGATA
GCAACGACGTCGTGGTCGTGAGCGCCAGCGCCAGCGCCAGCGCTACCACC
CCTCGACCGTCCGCGTCGTTGTCGCTCCTCCACGCCCTCGCCCGGCGGCC
TTCGGCGTCGTCGCCGCCGCCGCCTTCTTCTTCCAAGGCTGGCGGGAGCG
CCTCAGGCGAGCGAGGAGGGGGGAGGAGATCGCCGGGAGGATCTTCCTTC
CGAATCGAGGGGTCCACCGTTACCACCACCGGCAGCGGCAGGGGCCCGCA
TATGTTCGACCACCCGGTTTTGAGGGAGAACAAGCCGAGCGCCGCCGTCG
GAGACGGGGGCAGCGACAGCGACAGTGGCATCAAGTTTGGCGGCAAGGGC
AAAGGAAAAGCCAAGGCCAAGGTCAAGACCAAGGCCAGCGCCATGGGCCG
GGGGGGCAGCGGCAGCAGCAGGATGGTCCGCATGCGCGCGGTGCCTTCTT
CTTCTTCTTCTTCGTCGTCGTCGTCCGAGTCGTCCTCCTCTTACTCCTCA
TCGACGCGGCCGCCCGCTGCCGGACGTAGGGAGAAGAGCCGAAGAAGGTC
CCGCTTGAGCAGCGGCCACAGCGGCAGCAACAGCAGCAGCGGAAGCAGCG
ACAGCGATAGCAGCGACAGCAGCGACAGCGATAGCAGCGGCAGCGACAGC
AGCGAGTCCTCTTCTCCCTCCCCCTCTCCCTCTCCCTCCAAGCACGGCGC
CGCGGGCAAGAGGGGCACGAGCACACAGAGCGCTTCACAGAAGACGACGG
CAGCCGGCCAAGGAAAGGACGGCGACTTCGTCCGAGCGGCCGTCTCGAAG
AGCACCACTTCAGCGTCCTCCGCGGGGCTCGCCGACGACGACGCGAGAAG
CGACAGCGATGGTTACGATAGCAACGACGTCGTGGTCGTGAGCGCCAGCG
CCAGCGCCAGCGCTACCACCCCTCGACCGTCCGCGTCGTTGTCGCTCCTC
CACGCCCTCGCCCGGCGGCCTTCGGCGTCGTCGCCGCCGCCGCCTTCTTC
TTCCAAGGCTGGCGGGAGCGCCTCAGGCGAGCGAGGAGGGGGGAGGAGAT
CGCCGGGAGGATCTTCCTTCCGAATCGAGGGGTCCACCGTTACCACCACC
GGCAGCGGCAGG
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