mRNA_L-elsbetiae_contig1141.1241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1141.1241.1
Unique NamemRNA_L-elsbetiae_contig1141.1241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1141.1241.1 vs. uniprot
Match: A0A6H5JIV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.460e-6
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   19 MKIIVALLLAFVAPAE--AFVPSTSCR----GVIASSRTRAAPSTLLRAKKKAKNKTRGTEKTGTVFLPTPVP--QGKDAFSAAPTFEEFLKFKQAERGETELK 306
            MK++++LL+AFVA +   AF+P+TS R     + AS   R+  ST L AKK+   K +     G V  P      Q   ++SA PTFEEFLKFKQAER   + K
Sbjct:    2 MKLVLSLLVAFVAASSTVAFLPATSLRYATTAIAASRLRRSTTSTSLSAKKQKSEKAQ----LGDVHEPEDDSDRQQSGSYSAPPTFEEFLKFKQAERANEDQK 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1141.1241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIV3_9PHAE7.460e-643.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1141contigL-elsbetiae_contig1141:25569..28286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_000640.1
Exons2
Model size2324
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1141.1241.1prot_L-elsbetiae_contig1141.1241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1141 25587..26277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.4898117-UTR-L-elsbetiae_contig1141:25568..255861622815349.4898117-UTR-L-elsbetiae_contig1141:25568..25586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1141 25569..25586 +
1691682854.2303705-UTR-L-elsbetiae_contig1141:25568..255861691682854.2303705-UTR-L-elsbetiae_contig1141:25568..25586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1141 25569..25586 +
1622815349.5266504-UTR-L-elsbetiae_contig1141:26277..282861622815349.5266504-UTR-L-elsbetiae_contig1141:26277..28286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1141 26278..28286 +
1691682854.2642424-UTR-L-elsbetiae_contig1141:26277..282861691682854.2642424-UTR-L-elsbetiae_contig1141:26277..28286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1141 26278..28286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.5046177-CDS-L-elsbetiae_contig1141:25586..257091622815349.5046177-CDS-L-elsbetiae_contig1141:25586..25709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 25587..25709 +
1691682854.240251-CDS-L-elsbetiae_contig1141:25586..257091691682854.240251-CDS-L-elsbetiae_contig1141:25586..25709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 25587..25709 +
1622815349.5177941-CDS-L-elsbetiae_contig1141:26103..262771622815349.5177941-CDS-L-elsbetiae_contig1141:26103..26277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 26104..26277 +
1691682854.2491522-CDS-L-elsbetiae_contig1141:26103..262771691682854.2491522-CDS-L-elsbetiae_contig1141:26103..26277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 26104..26277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1141.1241.1

>prot_L-elsbetiae_contig1141.1241.1 ID=prot_L-elsbetiae_contig1141.1241.1|Name=mRNA_L-elsbetiae_contig1141.1241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MKIIVALLLAFVAPAEAFVPSTSCRGVIASSRTRAAPSTLLRAKKKAKNK
TRGTEKTGTVFLPTPVPQGKDAFSAAPTFEEFLKFKQAERGETELKFP*
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mRNA from alignment at L-elsbetiae_contig1141:25569..28286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1141.1241.1 ID=mRNA_L-elsbetiae_contig1141.1241.1|Name=mRNA_L-elsbetiae_contig1141.1241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2718bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:25569..28286+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGAAGAAGAGCCACTATGAAGATCATAGTTGCACTCCTTCTTGCCTT
CGTGGCCCCGGCTGAAGCATTCGTGCCCTCCACCTCTTGCCGTGGCGTTA
TCGCCTCTTCTCGCACGCGTGCCGCCCCAAGCACCTTGTTGGTGAGGTTT
ATTTTGAAATGGACGAGTTGCACTCTTGGCTCTGGCGGGGTGGCAAGGTC
TGGTTGTACGAAGAAAGGGAGGAGGACAAGCTGCGAACATAATTTTTTCA
CACTTCTTATTCTTGTGCTGAATAGAAGGCGTTGGAAGTTCGTTTCGAAA
TGACTGTCTGGGTGGTATGTAGCGATCCACACAGCTGTGCCTGACGCTGG
TGCTGACCCTTGTCTCGGTATCTAGATGCAACAGAGACAGCTGGAGAACT
GCCGCAGAGCTTCCTCTCTCCTCAACAAGGTGCTATTTTTCAGATCTCTC
CTCCTCTGTCAAACTGTCACCTCTAACGTACATTGGTGCTAATCGGTCGC
TGCTGCCTGCTTTCGTTCGTGTTGGCGTTTGTCAGAGAGCCAAGAAGAAG
GCGAAGAACAAGACCAGGGGGACGGAAAAGACTGGCACCGTATTTTTGCC
TACTCCTGTGCCTCAAGGCAAAGATGCTTTCTCCGCTGCTCCTACCTTCG
AGGAATTCCTCAAGTTCAAGCAGGCCGAGCGGGGAGAAACTGAGCTCAAG
TTTCCGTAAGGAGTACTTCTATTTCACTGGAATAGGTTTGCGCCATTCTT
GCATCGCGTTTGCTGGATGTCGGCCGGTTGGGGTGACCGTTTTCGATTGT
GAGTGTGCGTGTGTGCCCCCGTGTGCGGTGAGATAGACATACTTTAGAGC
CCTTTTGCCGCAGTCTGTTGTGACGGGGAGAAGGCGTCACCTGTGCTTGA
GATTTTAGGAATGAGGCGCTATTTAGGTGGTTGGTTTGCGCACAGCTCAT
GAGTGCACTGGTCGGTGGGTTGTGCTTAAATATTTACGAGGTTGCCTATA
AATGGGAAGGACACACACACACACACCTTGCCTTTATTAAAGGTAGATGG
CGCCTCTCAACCATCTGTCGAAGACGGTGCACTTGTTTGACGTTTGGTGT
CGACGGAGCGATTTCTGATTTCTCGCGGGCTTAGCACCAACCGCTCAGCT
TGTCCACCTTAACCAACCGGCCTCATCGAGACGCCATTGGGACGCCAACG
GGGATGATACCTCCGGTAGAGGGGCTGTGTCGTTGTAAGAATGTTTTACA
TACGGTGGTGAAAGCGCCCACCCTCGGAGACACCCAGATGTTTCTTCCGT
AGAGATGTGGCGAGGGATGCCAAGCGTGACCGAGCGAGCTCCTAGCCTGG
GTCGAGCTTGCTCGGCCACACGTGGCGATTCCTCACAGCGTCCCGGGAGA
GGCATCCTCGGCGTGCTCAGGCTTGGGTCGGTCCTCTCACCACTACCCAT
CACCTGTAGACTCTCTCCTCTACGGACCACCCTCAGAACCTTTCGGGGCT
TATGTACGTACGCTTGCTTGTGTGTACATACTCGGGGATGAGGTTCAGGT
GGAAATTAAGAGTCGGTGTAATGGCGTATTATGTTCTACAGGTCAGTGCG
ATCGTGCACTAGATTGCCGTTTTGTGTCCGCCGGTGCTCGCGTGTTCCTT
GGCCTGTGGCACGCCGCCTTCGTATTGAGGTGCTTCACCCATGTAGGTGT
AGCTATCTGTTGCCGCGAAGAGACGGGCGTAGTGTGGGTTGGGACGCACG
GACTTGACGCTTTTTCCCGTGCGGACGGGGGAGCGGACGCTCTCTTCTTT
TTCTTGCTTTTCGATTAGGTCGTCCGCGCGTCCGCGCTTCCTGTAAACAT
GTTGAGTTTTCTAGACCTTCGAGACTGGGTACCGTTCTCGCTTTTGTGCG
GTGGTGGCGTGTGTTGCTTGGGAAGTTTAAGTTCCCCGAACTCATTTAAA
ACCCTTCTCGCGTTTGGCGCCCGTGGAAGCGATTTCTGAATTCTCGCGGG
CATAAACGTACATGGCCCAACGGCTTAGCAAGCCCATGTTGCCCGATCGG
CCACATCGCTTGAGGGTGAAACATACCTCTGGAAGGCTTCTTTCGTCTAG
ATGTGTAATTGGTGAAAGTGAGTGCCACCGCAAGGCAGGCGAAGGATGCT
CCTTCCGTCGAGATATCTTTGGGGAATTGTCATGCCTGGATTTAGCTTGA
TCGGTCGCGCGCGGCACTTCCTCGTCCATTTCATTGGTGCATCCTACGTC
TTCCTAGGCAGCTTGGTACTGCCGCTCACCACCGTTATTAACACACGTGG
ACACACACGCGTTTAGACACACTCAGTCTCTCCGGCGGCATCACCTTACG
AAGCTACATATAATGGGCGACGCCTGGAAATCGAAATTATGAGCTTTGGC
GGGGAAATTTTTGGAGAGGGATGCAGTTAGTTGCGGATCTTCAGCAGATA
GATGCGATCGTATAACGCCCCCGCTGTTTTAGTGTCCTCCGATCATGCTG
GTGCGTTAATGGTTCTGTAGGAGAACCAGCTCCGTGTTGAGGTGCTTTAC
ATATCTGTTTCCGCAAGGAGAGGAGTACAATGTGGGTTGGGACGCAGCGT
ACTCTTTTCTGTTAAGGCTGGCCACGATCACGTGGCTAAGGGGAAAAGGC
CAAACCCCAGAAAAGGCGAAGAGGCATGTTGTGTTTTGTGGTCCGCACCC
GGCCAAAGCTGACGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1141:25569..28286+

>mRNA_L-elsbetiae_contig1141.1241.1 ID=mRNA_L-elsbetiae_contig1141.1241.1|Name=mRNA_L-elsbetiae_contig1141.1241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:25569..28286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGATCATAGTTGCACTCCTTCTTGCCTTCGTGGCCCCGGCTGAAGC
ATTCGTGCCCTCCACCTCTTGCCGTGGCGTTATCGCCTCTTCTCGCACGC
GTGCCGCCCCAAGCACCTTGTTGATGAAGATCATAGTTGCACTCCTTCTT
GCCTTCGTGGCCCCGGCTGAAGCATTCGTGCCCTCCACCTCTTGCCGTGG
CGTTATCGCCTCTTCTCGCACGCGTGCCGCCCCAAGCACCTTGTTGAGAG
CCAAGAAGAAGGCGAAGAACAAGACCAGGGGGACGGAAAAGACTGGCACC
GTATTTTTGCCTACTCCTGTGCCTCAAGGCAAAGATGCTTTCTCCGCTGC
TCCTACCTTCGAGGAATTCCTCAAGTTCAAGCAGGCCGAGCGGGGAGAAA
CTGAGCTCAAGTTTCCGTAAAGAGCCAAGAAGAAGGCGAAGAACAAGACC
AGGGGGACGGAAAAGACTGGCACCGTATTTTTGCCTACTCCTGTGCCTCA
AGGCAAAGATGCTTTCTCCGCTGCTCCTACCTTCGAGGAATTCCTCAAGT
TCAAGCAGGCCGAGCGGGGAGAAACTGAGCTCAAGTTTCCGTAA
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