mRNA_L-elsbetiae_contig1141.1236.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1141.1236.1
Unique NamemRNA_L-elsbetiae_contig1141.1236.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: A0A7S3Y650_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y650_HETAK)

HSP 1 Score: 102 bits (255), Expect = 8.930e-24
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    4 NEVLQGSPDFKVQNGDRKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAV 231
            N+ L+G  DF      RKCTD+LFLL+L A W AMT LG +V GVIP++ LEPGNP+RLINGIDY G ICGV SAV
Sbjct:   15 NKKLEGGADFPGPCEKRKCTDILFLLLLIACWVAMTFLGFVVCGVIPNDNLEPGNPQRLINGIDYNGHICGVDSAV 90
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK)

HSP 1 Score: 101 bits (252), Expect = 2.300e-23
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 DNEVLQGSPDFKVQNGDRKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAVK 234
            DN+ L+ S DF      RKCTD+LFLL++ A W AMT LG +VTG IPS+ L+ GNP+RLINGIDYEG ICGV S VK
Sbjct:   66 DNKKLEHSADFAGPCEKRKCTDILFLLLIIACWVAMTFLGFVVTGAIPSDTLDAGNPERLINGIDYEGNICGVDSGVK 143
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: D7FSF7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.140e-20
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   82 MLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAVK 234
            MLFAAWAAMT+LG IVTG+IP++GLEPGNPKRL+NGIDYEGRICGVG+ V+
Sbjct:    1 MLFAAWAAMTMLGFIVTGLIPNDGLEPGNPKRLLNGIDYEGRICGVGTTVQ 51
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: A0A835Z9G9_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.150e-20
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    4 NEVLQGSPDFKVQNGDRKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAV 231
            N  L+GSP FKV    R+CTD+LF L+L A+WAAMT LGL+V G+I S   E GNPKRL+NGID +G ICGV  AV
Sbjct:   16 NAKLEGSPAFKVGE-HRRCTDMLFSLLLIASWAAMTFLGLVVVGIIDSPEFEAGNPKRLVNGIDNQGHICGVDKAV 90
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: A0A7S2Y2B5_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2B5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.030e-18
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   49 DRKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAVK 234
            +RKCTDVL +L+L A W A T+LG IV GVI +E LE GNP RL+NG+DY+GR+CG+ S VK
Sbjct:    5 NRKCTDVLCMLLLIAVWFATTILGFIVCGVIENENLEAGNPWRLVNGVDYDGRVCGIDSGVK 66
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: A0A7S3H7K4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7K4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.810e-17
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   52 RKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAV 231
            R CTD+L LL+L A W  MT+LGLIVTG+I ++ L  G+P+RLIN IDY GRICGVG+ V
Sbjct:    6 RCCTDLLMLLLLIAVWITMTVLGLIVTGLIENDNLTAGDPRRLINPIDYNGRICGVGTGV 65
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: B8C1T3_THAPS (Choline transporter-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1T3_THAPS)

HSP 1 Score: 74.3 bits (181), Expect = 9.210e-14
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   52 RKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGV 219
            R CTDVLFLL+L  AW AMT +GL  TG+I SE ++ G+P+RLING+DY   ICGV
Sbjct:    5 RTCTDVLFLLLLVCAWIAMTGVGLAATGLIKSEVIKKGDPRRLINGLDYHANICGV 60
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.230e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   22 SPDFKVQNGDRKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAVK 234
            +PD      DR+CTDVLF+L+L  AW AMT LG+        +G+  GNP  L+NGIDY+GRICGV   VK
Sbjct:   20 APDDIEGGADRRCTDVLFMLVLILAWLAMTYLGV--------DGISNGNPDLLLNGIDYDGRICGVDDGVK 82
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.240e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   22 SPDFKVQNGDRKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAVK 234
            +PD      DR+CTDVLF+L+L  AW AMT LG+        +G+  GNP  L+NGIDY+GRICGV   VK
Sbjct:    4 APDDIEGGADRRCTDVLFMLVLILAWLAMTYLGV--------DGISNGNPDLLLNGIDYDGRICGVDDGVK 66
[Close]
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.980e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    7 EVLQGSPDFKVQNGD--RKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSEGLEPGNPKRLINGIDYEGRICGVGSAVK 234
            + LQ  P+F   +G   RKCTD LF+L+L   W AMT++G+        + ++ GNP RL+NGIDY+GRICGV + V+
Sbjct:    7 QKLQAPPNF---DGPVKRKCTDTLFMLVLVCCWIAMTVIGI--------KAVQTGNPDRLVNGIDYQGRICGVDAGVE 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1141.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y650_HETAK8.930e-2464.47Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S3Y6D2_HETAK2.300e-2362.82Choline transporter-like protein n=1 Tax=Heterosig... [more]
D7FSF7_ECTSI2.140e-2082.35Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z9G9_9STRA2.150e-2061.84Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A7S2Y2B5_9STRA8.030e-1862.90Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A7S3H7K4_9STRA2.810e-1763.33Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
B8C1T3_THAPS9.210e-1462.50Choline transporter-like protein (Fragment) n=1 Ta... [more]
D8LIJ7_ECTSI3.230e-1352.11Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5L007_9PHAE3.240e-1352.11Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z6J7_9STRA9.980e-1246.15Choline transporter-like protein n=1 Tax=Tribonema... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1141contigL-elsbetiae_contig1141:937..2325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue3.4e-17
Seed eggNOG ortholog2880.D7FSF7
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons2
Model size237
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.9543633-CDS-L-elsbetiae_contig1141:936..9721622815348.9543633-CDS-L-elsbetiae_contig1141:936..972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 937..972 +
1691682853.9621773-CDS-L-elsbetiae_contig1141:936..9721691682853.9621773-CDS-L-elsbetiae_contig1141:936..972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 937..972 +
1622815349.0833917-CDS-L-elsbetiae_contig1141:2126..23241622815349.0833917-CDS-L-elsbetiae_contig1141:2126..2324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 2127..2324 +
1691682853.971919-CDS-L-elsbetiae_contig1141:2126..23241691682853.971919-CDS-L-elsbetiae_contig1141:2126..2324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 2127..2324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1141.1236.1prot_L-elsbetiae_contig1141.1236.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1141 937..2324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1141.1236.1

>prot_L-elsbetiae_contig1141.1236.1 ID=prot_L-elsbetiae_contig1141.1236.1|Name=mRNA_L-elsbetiae_contig1141.1236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
DNEVLQGSPDFKVQNGDRKCTDVLFLLMLFAAWAAMTLLGLIVTGVIPSE
GLEPGNPKRLINGIDYEGRICGVGSAVK
back to top

mRNA from alignment at L-elsbetiae_contig1141:937..2325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1141.1236.1 ID=mRNA_L-elsbetiae_contig1141.1236.1|Name=mRNA_L-elsbetiae_contig1141.1236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1389bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:937..2325+ (Laminarionema elsbetiae ELsaHSoW15)
GACAATGAGGTCCTCCAGGGTAGTCCAGACTTCAAGGTACGTCGTGATTT
GTGTACGACACTTCTTTGCTTCGGTGTGATGTCGTTGTCGTATCTCGGGA
AGGGCGAGTTGTGATTCTCTCGTTGCAGCATGCCGTTAAAAACTTGAACT
TGTTCCGGCCGACGGCCTCGTCTGCCCGACGCCATATAGACTATTGACTG
TTGTAGCGTACGCACGACACTCGAATAAAATGCCTCGTATGTAGTCTGGT
AGTTGTAAGCACCTGCTAAGTACACAAACCAGGTGGTGTATGTATGTTGG
GCGGCATGCATGGCGCTTCCAAAGTACAAAGTAGTATCTACTTATCGATC
TAGGTCTAGTCTACATCTATCTCTAGATAGATACGTATGGAGATATTAAA
TGGCAGGCATCCTTAGATATGCAGGTACCACATCGGACATGTAGAGCACG
CCCTTTACGATCACATCATGACAAGATGGTGCACGAGCGCGACACTCTCT
GTACAGTGAAATATTGTCACCATATCTGCTCCCTTGCGAAGGGACACCTC
GAGCTGGCCACACGGTGATGACTGCTTGCAACTTTACCGAGGGGCGCGCG
CGCGGGGGGGGGGGGGGGGGGGGGGGGGGAGAGGTTAAAAAATGTCCTTT
GTGGTCACTCTTTGATTGGGGGACTAAATTTAATTTTTGGTTCGTGATGG
ATANNNNNNNNNNCCCGCCCCGCCCCCCCACGCTCGCGGGGGGGGGGCCG
GGGGGGGGGGGGGGGGGGGGGGGGGGTCGGTGGTTGTGTGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGTAGATGGTAGTAGTCTCAACATG
TGCCTTGCTGGTAACTCTTTGACTGGTGACTCAATGTCACTTTTGGCTCG
TCGATGAGATAAACTCGTTTGGTTAGTTCCACACGGACCGGGTTGACGAA
CACCGGCGAGACACACACGTACGTATATACTCTGACATATGTATACCAAG
CTTGGTTTCCCACGGAGCTGGTCATGTAAGACCGACCATACTTACTTGCG
GTTTTGTATTTCTGTTACTCTTTATATGCTACCATACTCCTGTGTATATA
TATTCTACCATCGCCATTCACACGTGTGTAACAAGAAGGGACACGCTGGA
GACCACTAATACCAACAACAACAACAACGTAAACATTCAGGTTCAGAATG
GCGATCGGAAGTGCACGGACGTGCTCTTTCTGCTCATGCTTTTTGCGGCG
TGGGCGGCGATGACCCTCCTTGGCCTTATCGTCACGGGTGTGATCCCTAG
CGAGGGGTTGGAGCCGGGAAATCCAAAACGCCTCATAAACGGCATCGACT
ACGAAGGCCGTATCTGCGGGGTGGGCAGCGCCGTCAAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1141:937..2325+

>mRNA_L-elsbetiae_contig1141.1236.1 ID=mRNA_L-elsbetiae_contig1141.1236.1|Name=mRNA_L-elsbetiae_contig1141.1236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:937..2325+ (Laminarionema elsbetiae ELsaHSoW15)
GACAATGAGGTCCTCCAGGGTAGTCCAGACTTCAAGGACAATGAGGTCCT
CCAGGGTAGTCCAGACTTCAAGGTTCAGAATGGCGATCGGAAGTGCACGG
ACGTGCTCTTTCTGCTCATGCTTTTTGCGGCGTGGGCGGCGATGACCCTC
CTTGGCCTTATCGTCACGGGTGTGATCCCTAGCGAGGGGTTGGAGCCGGG
AAATCCAAAACGCCTCATAAACGGCATCGACTACGAAGGCCGTATCTGCG
GGGTGGGCAGCGCCGTCAAGGTTCAGAATGGCGATCGGAAGTGCACGGAC
GTGCTCTTTCTGCTCATGCTTTTTGCGGCGTGGGCGGCGATGACCCTCCT
TGGCCTTATCGTCACGGGTGTGATCCCTAGCGAGGGGTTGGAGCCGGGAA
ATCCAAAACGCCTCATAAACGGCATCGACTACGAAGGCCGTATCTGCGGG
GTGGGCAGCGCCGTCAAG
back to top