mRNA_L-elsbetiae_contig114.1224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig114.1224.1
Unique NamemRNA_L-elsbetiae_contig114.1224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: D7G3P2_ECTSI (Similar to ankyrin 3, epithelial isoform e isoform 19 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P2_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.100e-36
Identity = 95/203 (46.80%), Postives = 124/203 (61.08%), Query Frame = 1
Query:   19 EMIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATNDEAEIPLDVVG-QGDFSGFLS----SRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSED-----AGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            +M++ LL  GA+VN   ASDGNTPLH+AAE +    V+ LL AG DETA N + + PLDV+G + D    L         AIR+LL NA +DRA+RAWSRRGFFVLCR FP R++ QL  S D        +   + +    D    SR   KRV +AE+    +E     H EE ATAFRAAM RL+GL+ +V+FRT++ F+
Sbjct:  325 DMLLALLGRGAHVNTKGASDGNTPLHLAAEKSFRVKVDVLLQAGADETAVNHKGQTPLDVIGLKTDTMRTLMFGDHREEDAIRTLLVNAPKDRANRAWSRRGFFVLCRAFPERVQQQLVLSGDDRVNVVCSNVCSQASCGNDDDRSDSRNNAKRVATAEEKEGVEERPSAAHVEEGATAFRAAMGRLIGLQVEVVFRTVLEFV 527          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.810e-24
Identity = 82/203 (40.39%), Postives = 110/203 (54.19%), Query Frame = 1
Query:   13 SSEMIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSN----VEALLTAGGDETATNDEAEIPLDV----VGQGDFSGFLSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            ++ +I  L RHGA+V+A     GNTPLHVAA+  +T +    V+ALL AG DET  + + + PLDV    +  GD  G   +     RS+L NA +DRA RAWSRR FFV+CR  P R+RL +   +D          +SPR       AKK    +A   G G+  A      +SA  F+ AM  L+ L+ D +FR IV FL
Sbjct:   96 NAAVIEALARHGADVHAQETPSGNTPLHVAAQNCTTESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASVNEAERTRSVLVNAPKDRAQRAWSRRSFFVMCRAHPDRVRLTVV--DDT--------TTSPR-------AKKTMAAAATAVGSGRRGANR----DSADNFQRAMRSLIRLKEDGLFRKIVAFL 277          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: A0A6H5L850_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L850_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.220e-20
Identity = 78/205 (38.05%), Postives = 111/205 (54.15%), Query Frame = 1
Query:    1 AEPYSSEMIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATNDEAEIPLDVVGQGDFSG----FLSSRWA-AIRSLLANARRD-RADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            AE +S+ M+I +L HGA+VN   ASDGNTPLH+AAE +    V+ LL AG  ETA N   + PLDV+G    +     F + R   AIR+LL NA ++ R +R                   + ++F +D            P D    +R+  KRV +A++ G  +    +   EE ATAFRAAM RL+GLE +V+FRT++ F+
Sbjct:  236 AEKWSNHMLIAMLGHGAHVNTKGASDGNTPLHLAAEKSFRVKVDVLLQAGAHETAVNHNGQTPLDVIGLNTDTMRTLVFGNHREEDAIRTLLVNAPKEGRIERGL-----------------VGVSFGKD----------DEPSD----NRSNAKRVATAKETGGVEGPPSDAPVEEGATAFRAAMGRLIGLEVEVVFRTVLEFV 409          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.400e-13
Identity = 74/203 (36.45%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   13 SSEMIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATNDEAEIPLDVVG---QGDFSGF-LSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISR----AKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            S +  + LL  GAN NA       TPLHVA   ++ + VE LL  G DET +ND  ++P DV+G   +GD +   + +    IR +LA A    ADR+W RRG+ VL R  P   R+Q+A                   G  ++R    AK  RV S ED G  +E A+N    +    +   +  L+GLEAD +FR +VGFL
Sbjct:  330 SIDTTLALLEGGANTNA-HGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAP---ADRSWRRRGWLVLSRSCP--TRVQIA-----------------NKGSRVNRNSCPAKVARV-SGEDLGGDEEEAEN----QMTVDWGGLVGSLLGLEADGLFRLVVGFL 504          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.700e-12
Identity = 68/199 (34.17%), Postives = 99/199 (49.75%), Query Frame = 1
Query:   13 SSEMIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATNDEAEIPLDVVGQ----GDFSGFLSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            S+  I  LL  GA+VN VR  +  TPLH A   +S + VE LL  G DE  T+D    P D++G     G   G + +    I  +LA A    ADR+W RR + VL R  P R+++    +E+         +SS  +   ++R       S ED G G+   ++    +     R  ++RL+GLEAD +FR +VGFL
Sbjct:  332 STGTIRALLEGGADVN-VRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAP---ADRSWRRRSWLVLSRSCPTRVKIA---NENRSGSSVGSSSSSNGNSTKLARF------SGEDSGGGERETED----QMMVDLRGLVTRLVGLEADGLFRLVVGFL 513          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: A0A6H5KHT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.200e-12
Identity = 61/161 (37.89%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  127 VEALLTAGGDETATNDEAEIPLDV----VGQGDFSGFLSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            V+ALL AG DET  + + + PLDV    +  GD  G  ++     RS+L NA +DRA RAWSRR FFV+CR  P R RL +                   DG   S + KK    A   G G    +  + +  A  F+ AM  LM L+ D +FR IV FL
Sbjct:  345 VDALLKAGADETRLDCQGQTPLDVLEARIAVGDVVGANAAEHT--RSMLVNAPKDRAQRAWSRRSFFVMCRAHPNRARLTVV------------------DGTTTSPSAKKLATEATAVGSGW---RGTNWDSRADIFQRAMRSLMLLKEDGLFRKIVAFL 482          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.430e-11
Identity = 67/198 (33.84%), Postives = 89/198 (44.95%), Query Frame = 1
Query:   13 SSEMIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATNDEAEIPLDVVG---QGDFSGFLSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            S+  I  LL  GAN+NA  A D +TPLH+A      S VE LL  G DE   N++ + P DVVG   Q D       R A  + +     R  ADR+W RRG+ VL R  P R+ +    S  +                 ISR        A   G+G         ++     R  + RL+GLEA+ +FR +VGFL
Sbjct:  333 STGTICALLEGGANINARTAGD-DTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDD--EEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSS----------------ISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-8
Identity = 73/207 (35.27%), Postives = 96/207 (46.38%), Query Frame = 1
Query:   25 IIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATN------------DEAEIPLDVV-GQGDFSG---FLSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            I  LL  GANVNA    D  TPLHVA   +S + VE LL  G DE  T+             E E P DV    G+  G    + +    IR +LA A    ADR+W RR + VL R  P ++++    S            SS   G  +S A+   V   + GG  KE       ++    +R  + RL+GLEADV+FR +VGFL
Sbjct:   79 IRALLEGGANVNARDVFD-QTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAP---ADRSWHRRRWLVLSRSCPTKVQISNTSSSSN--------ISSGSSGDGLS-AEMVSVNCKDLGGDDKETE-----DQKTVNWRDLVVRLVGLEADVLFRLVVGFL 267          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.030e-8
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   13 SSEMIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATNDEAEIPLDVVG---QGDFSGF-LSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            S   I  LL  GAN+NA R     TPLHVA   +S   VE LL  G D+  T +  + P  VV    Q D     L +    IR +LA   RD A R+W RRG+ VL R  P R+++    S            +        + AK  +V S E   R  E      A++     R  + RL+ LEAD +FR +VGFL
Sbjct:  294 SDGTIRALLEGGANINA-RIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLA---RDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNG-------NSAKVAKV-SGESSSRDDEET----ADDMMVDLRDLVGRLIALEADGVFRLVVGFL 476          
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.610e-7
Identity = 60/166 (36.14%), Postives = 76/166 (45.78%), Query Frame = 1
Query:  127 VEALLTAGGDETATNDEAEIPLDVVGQ----GDFSGFLSSRWAAIRSLLANARRDRADRAWSRRGFFVLCRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSA-----EDGGRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL 597
            V+ LL  G DET  +   + P D VG     GD    L      +  LLANA    ADRAW RRG  VLCR +  R RL+    ED GD    R   S R       A+   VG+       +GG G E             +R+A  R++ LE + IFR++VGFL
Sbjct:  281 VDLLLRRGADETTPDRNGQQPADRVGHCMELGDV--LLGHEVVLVHELLANAP---ADRAWRRRGLLVLCRAWLRRSRLR---QEDGGD---TRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDE-------------WRSASKRVVELEEEGIFRSVVGFL 422          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig114.1224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G3P2_ECTSI1.100e-3646.80Similar to ankyrin 3, epithelial isoform e isoform... [more]
D7G0W2_ECTSI1.810e-2440.39Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L850_9PHAE9.220e-2038.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI4.400e-1336.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD22_ECTSI2.700e-1234.17MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5KHT9_9PHAE4.200e-1237.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI1.430e-1133.84Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5K6K9_9PHAE1.800e-835.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L812_9PHAE4.030e-834.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI2.610e-736.14Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig114contigL-elsbetiae_contig114:8607..11175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue1.2e-34
Seed eggNOG ortholog2880.D7G3P2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1233
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig114.1224.1prot_L-elsbetiae_contig114.1224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig114 10576..11154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.716094-UTR-L-elsbetiae_contig114:8606..92301622815347.716094-UTR-L-elsbetiae_contig114:8606..9230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 8607..9230 -
1691682853.0407574-UTR-L-elsbetiae_contig114:8606..92301691682853.0407574-UTR-L-elsbetiae_contig114:8606..9230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 8607..9230 -
1622815347.7264075-UTR-L-elsbetiae_contig114:10566..105751622815347.7264075-UTR-L-elsbetiae_contig114:10566..10575Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 10567..10575 -
1691682853.0503182-UTR-L-elsbetiae_contig114:10566..105751691682853.0503182-UTR-L-elsbetiae_contig114:10566..10575Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 10567..10575 -
1622815347.7455246-UTR-L-elsbetiae_contig114:11154..111751622815347.7455246-UTR-L-elsbetiae_contig114:11154..11175Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 11155..11175 -
1691682853.070488-UTR-L-elsbetiae_contig114:11154..111751691682853.070488-UTR-L-elsbetiae_contig114:11154..11175Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 11155..11175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.736511-CDS-L-elsbetiae_contig114:10575..111541622815347.736511-CDS-L-elsbetiae_contig114:10575..11154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 10576..11154 -
1691682853.0605977-CDS-L-elsbetiae_contig114:10575..111541691682853.0605977-CDS-L-elsbetiae_contig114:10575..11154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 10576..11154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig114.1224.1

>prot_L-elsbetiae_contig114.1224.1 ID=prot_L-elsbetiae_contig114.1224.1|Name=mRNA_L-elsbetiae_contig114.1224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
MIIVLLRHGANVNAVRASDGNTPLHVAAEVASTSNVEALLTAGGDETATN
DEAEIPLDVVGQGDFSGFLSSRWAAIRSLLANARRDRADRAWSRRGFFVL
CRVFPGRMRLQLAFSEDAGDHKAPRPASSPRDGFLISRAKKKRVGSAEDG
GRGKEHAKNVHAEESATAFRAAMSRLMGLEADVIFRTIVGFL*
back to top

mRNA from alignment at L-elsbetiae_contig114:8607..11175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig114.1224.1 ID=mRNA_L-elsbetiae_contig114.1224.1|Name=mRNA_L-elsbetiae_contig114.1224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2569bp|location=Sequence derived from alignment at L-elsbetiae_contig114:8607..11175- (Laminarionema elsbetiae ELsaHSoW15)
GCCGAACCCTATTCGAGTGAAATGATAATCGTTTTGCTGAGGCACGGCGC CAATGTAAACGCAGTACGGGCGTCTGACGGAAATACTCCGTTGCACGTGG CAGCGGAGGTAGCTTCGACGTCGAACGTTGAAGCCCTTTTGACAGCGGGT GGGGATGAGACGGCTACTAATGATGAGGCTGAAATCCCGTTAGATGTGGT CGGACAAGGAGATTTTTCTGGCTTTTTGTCCAGCCGCTGGGCCGCTATCC GGTCTCTACTGGCAAACGCCCGTAGAGACAGGGCGGACAGAGCGTGGTCT CGTCGGGGCTTCTTCGTTCTGTGTCGCGTTTTCCCGGGCCGGATGCGGCT GCAGCTTGCATTTTCCGAGGACGCCGGTGATCACAAAGCACCGCGGCCGG CCTCGTCACCAAGGGATGGATTCTTAATCAGCAGGGCGAAAAAGAAAAGA GTAGGAAGTGCAGAGGACGGAGGCCGCGGGAAGGAACACGCAAAGAACGT GCATGCGGAAGAAAGTGCAACAGCGTTCCGGGCTGCAATGAGCAGGCTGA TGGGGCTTGAAGCAGACGTCATTTTCCGGACGATCGTGGGATTTTTGTGA TGACATCAGGTGAGATTTTACTGATTCCGAGGTTGCGGGACGATCGTTCA GCCGGGTATGACTTTGTAATTGTTTGTATTCTGCGTACGCTATTCGTGCA CTGCATACATGTGCATTGAGGTCATGCGTTTTACGTGTCGTGTGCCTTTT TTAGCACACACCCGCGCCCACGGCCCTCCGCCCCACCTCTTTCTGTGTAG TGACGTGTGGAAGCAGATGCGAACTCTTCAACATATATCTATATTACGGC GTACCGCTCGCAAGGTCGCTGCTTTCAGGTCGTACATATTTCCAGTTCGA CCCTCTTGGAAGCGGTCCATGGCCGTCGTTTGGGCTGCGCATGCTTTTGT GGAAAAGACTTTTGGTTTTTTGTTTTCCCGTTGTATCGGCGGTGGAGAGT CCTGAAACACAAAACGCGAGAATTTCTTCCTGCATAGCTTCGACAGATCA GACTGGGCGAACAGCATTTTCCATATCCGTTAATACAATCAAACCCCCAG AGAAGAGTACCAGTACCTCGGGGTTTCGGGGTGTCGTATTGTACAGTAGG CGTCATCCATCTGTGCGACTTCCCGAGCTAGGTATTATCGTCTGGTATCT ATTTTTAACAAATGTTTTGTACGCGTTGTTTGTCACACTATGTAGCTCTC TAGCCCAAAGCATCGACGGGAACCCGTGGTCACGAAACAAAGCTAGCACT CAACCCCACGAAGAAGAGTTATGGCACAAACGCGCCGTACGTACACAAGA TAACACACCGAGCCCTTATGGCGGCCTGCTGCCCATCGGCGAAATGTCCT CTCAAAGGACCCAGTCCGAAGAAGAATCTCACCGCTTTCAACATCCAATT TACTTCCACCCTGCCGGTGTCGTCTCTCACACCGAAGCTCCAATCCACGC ACATTTTAGGCCGAATCCCGGTGGCACCAACAGCCACCCTTGTCGCGCAT CTCCCATGGCCCCCTGCTTTCGGGGAGGGGAGTGGGTCGAGCATGTTTGG CGACCTCACATACAAGTACATCAGTGTACGTGAAATTCCTGACCGTCAGA CAGTGCCTCACCGTTCAGTATCCGACCTAAACAAAGCACCCAATCCGGCA CTAGATTATAACCGTGTTTCTGGTCTTTTTCGTAGATCCGCAGGGCATCC TCGTTTGTTTCCGTAGGAGCTTATTTACGCACCGATGTATGTAGTGGGTG CTCAAAGAAGAGCCATATATGTTTCCCTCCCACGCAGCTTGATTTTTGCC GTCTCCCCGCGTGCCCATTGCCTGTCTGCATGCGAAGCGTTTTGTACCCA ACCCCCCCCCCTCTGTTTTCGGTGCATTGGGTCTTGGTTGCTCAGCGTGC TCAAGATTGGCATTGATGGCTTCCGTGACGGGACTGGGTGCATACGTACG CGGTGGACAAGACGACGGCATCGGTGCTCGAACAAGGCGCCATCTTACCG AGATTAGTTTTTTTGTATTTGTTTCGCGTGAGGGCTGCCCGCGGGCGTGA GGGTGCGGTGGCTTCTGCTTGTTTTTGCAATGTCTTTATGCGTCGGGGGT GCTGACGAGGTTGATTTGACTTGCGTCAGGATTCTGCCTAAACCTGCTTG GAACTGCACACGAGGCGGCGTTGTTTCATTGGGTGTACTCCTTATTGTGC TTGTTCTTGACACGTGTTCCTCGCCAGCATATGCGGCGGCATTGCGGGCG TCTCGAAATTGTTTTCGCATCCAGGCTGTTTACGATGTTTTTGGTTTGCG CGGGTGCGAAAGGGGTCTTTACGGTTCCTGTTTATTTGTCTGTCTTTCCG GGTCGGGGATGCTTCTGAGTTTGCCGTATTATCCCCCGAAAACGCCCCCC TCGAAAAATAACGCCCCCCCCCAAACGCAACCTAAACGGCCTTGATAATG CCTCGGGCCGTTCGATGTTTTCGATTTTGTTTTCAATCGCCCCTCTACCT TTGAGAACGCCCCGGGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig114:8607..11175-

>mRNA_L-elsbetiae_contig114.1224.1 ID=mRNA_L-elsbetiae_contig114.1224.1|Name=mRNA_L-elsbetiae_contig114.1224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig114:8607..11175- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAATCGTTTTGCTGAGGCACGGCGCCAATGTAAACGCAGTACGGGC
GTCTGACGGAAATACTCCGTTGCACGTGGCAGCGGAGGTAGCTTCGACGT
CGAACGTTGAAGCCCTTTTGACAGCGGGTGGGGATGAGACGGCTACTAAT
GATGAGGCTGAAATCCCGTTAGATGTGGTCGGACAAGGAGATTTTTCTGG
CTTTTTGTCCAGCCGCTGGGCCGCTATCCGGTCTCTACTGGCAAACGCCC
GTAGAGACAGGGCGGACAGAGCGTGGTCTCGTCGGGGCTTCTTCGTTCTG
TGTCGCGTTTTCCCGGGCCGGATGCGGCTGCAGCTTGCATTTTCCGAGGA
CGCCGGTGATCACAAAGCACCGCGGCCGGCCTCGTCACCAAGGGATGGAT
TCTTAATCAGCAGGGCGAAAAAGAAAAGAGTAGGAAGTGCAGAGGACGGA
GGCCGCGGGAAGGAACACGCAAAGAACGTGCATGCGGAAGAAAGTGCAAC
AGCGTTCCGGGCTGCAATGAGCAGGCTGATGGGGCTTGAAGCAGACGTCA
TTTTCCGGACGATCGTGGGATTTTTGTGAATGATAATCGTTTTGCTGAGG
CACGGCGCCAATGTAAACGCAGTACGGGCGTCTGACGGAAATACTCCGTT
GCACGTGGCAGCGGAGGTAGCTTCGACGTCGAACGTTGAAGCCCTTTTGA
CAGCGGGTGGGGATGAGACGGCTACTAATGATGAGGCTGAAATCCCGTTA
GATGTGGTCGGACAAGGAGATTTTTCTGGCTTTTTGTCCAGCCGCTGGGC
CGCTATCCGGTCTCTACTGGCAAACGCCCGTAGAGACAGGGCGGACAGAG
CGTGGTCTCGTCGGGGCTTCTTCGTTCTGTGTCGCGTTTTCCCGGGCCGG
ATGCGGCTGCAGCTTGCATTTTCCGAGGACGCCGGTGATCACAAAGCACC
GCGGCCGGCCTCGTCACCAAGGGATGGATTCTTAATCAGCAGGGCGAAAA
AGAAAAGAGTAGGAAGTGCAGAGGACGGAGGCCGCGGGAAGGAACACGCA
AAGAACGTGCATGCGGAAGAAAGTGCAACAGCGTTCCGGGCTGCAATGAG
CAGGCTGATGGGGCTTGAAGCAGACGTCATTTTCCGGACGATCGTGGGAT
TTTTGTGA
back to top