mRNA_L-elsbetiae_contig114.1223.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig114.1223.1
Unique NamemRNA_L-elsbetiae_contig114.1223.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig114.1223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig114contigL-elsbetiae_contig114:6748..7650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-00_010990.1
Exons2
Model size664
Cds size582
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig114.1223.1prot_L-elsbetiae_contig114.1223.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig114 6748..7570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.5955417-CDS-L-elsbetiae_contig114:6747..69551622815347.5955417-CDS-L-elsbetiae_contig114:6747..6955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 6748..6955 +
1691682852.9522629-CDS-L-elsbetiae_contig114:6747..69551691682852.9522629-CDS-L-elsbetiae_contig114:6747..6955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 6748..6955 +
1622815347.6064396-CDS-L-elsbetiae_contig114:7196..75701622815347.6064396-CDS-L-elsbetiae_contig114:7196..7570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 7197..7570 +
1691682852.9623764-CDS-L-elsbetiae_contig114:7196..75701691682852.9623764-CDS-L-elsbetiae_contig114:7196..7570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 7197..7570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.6153495-UTR-L-elsbetiae_contig114:7570..76501622815347.6153495-UTR-L-elsbetiae_contig114:7570..7650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 7571..7650 +
1691682852.9718251-UTR-L-elsbetiae_contig114:7570..76501691682852.9718251-UTR-L-elsbetiae_contig114:7570..7650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig114 7571..7650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig114.1223.1

>prot_L-elsbetiae_contig114.1223.1 ID=prot_L-elsbetiae_contig114.1223.1|Name=mRNA_L-elsbetiae_contig114.1223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
PTGHGNDERQPEQAEWPQDHRPGGWNPGAGHGNPSELLGVSVSLPNLGLP
PGSGGEATGGRGQASRGLKGGAHGENPGRYTGHKQPGLHGSKSFGAFWGV
DPQQTRGDQHRPPRLPLRNSNHLRNSTAHGHATASQAHQNPTSRKAAAGA
RQGSGSNQAGGARVLSSDVEVVPAVKGAVELTPVRGISRVWAG*
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mRNA from alignment at L-elsbetiae_contig114:6748..7650+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig114.1223.1 ID=mRNA_L-elsbetiae_contig114.1223.1|Name=mRNA_L-elsbetiae_contig114.1223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=903bp|location=Sequence derived from alignment at L-elsbetiae_contig114:6748..7650+ (Laminarionema elsbetiae ELsaHSoW15)
CCGACAGGACATGGCAACGACGAGCGGCAGCCGGAGCAAGCGGAATGGCC
GCAAGACCACCGGCCAGGCGGCTGGAACCCAGGGGCTGGCCACGGTAACC
CGTCGGAGCTATTGGGAGTTTCTGTATCCCTCCCGAACCTAGGGTTGCCT
CCGGGCTCGGGGGGCGAGGCAACGGGCGGGAGAGGACAGGCTTCCCGAGG
GCTGAAGGGCAAGTGAACACAGCAAGTATATATTGCGTTACATAATTTCA
CAGTGTACGGAGCAAGCACTAAATAGTCTAGACTAAGTGAGGAACGCGAG
GCTCGCATTATTTAGGCCTCCTTCCAACGTTTGGACTCTCCGAATCCTGA
CGTGCGAGCTGATGATGTTGTAAACGTTTTCGTCGGTTGCTCGAAACATG
TATCTAACCCATCAGTTCTCTCTCGCGCACACACGCACTCGTACCGCAGG
AGGTGCCCATGGCGAAAACCCCGGCCGGTACACGGGGCACAAGCAGCCAG
GTCTGCACGGCAGCAAGAGCTTCGGGGCCTTCTGGGGAGTGGACCCTCAA
CAAACACGGGGCGACCAACACCGTCCACCGCGATTGCCTCTCCGCAACAG
CAACCACCTGAGAAACAGCACGGCCCATGGCCACGCCACTGCATCACAAG
CGCATCAGAACCCCACCAGCCGCAAAGCGGCCGCTGGTGCGCGGCAAGGG
TCAGGATCAAACCAAGCGGGTGGGGCGAGAGTGTTGTCGTCGGACGTGGA
GGTTGTGCCCGCGGTGAAGGGGGCCGTCGAGCTCACTCCGGTTCGAGGAA
TTAGCCGGGTGTGGGCCGGATAAGGCGATCTTTACCGCGCGCACATACCT
TTCTCGGGAAAACCGGAGCTGAACCCCAAAGGATGAGTGCAAGGAGAGAA
GAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig114:6748..7650+

>mRNA_L-elsbetiae_contig114.1223.1 ID=mRNA_L-elsbetiae_contig114.1223.1|Name=mRNA_L-elsbetiae_contig114.1223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig114:6748..7650+ (Laminarionema elsbetiae ELsaHSoW15)
CCGACAGGACATGGCAACGACGAGCGGCAGCCGGAGCAAGCGGAATGGCC
GCAAGACCACCGGCCAGGCGGCTGGAACCCAGGGGCTGGCCACGGTAACC
CGTCGGAGCTATTGGGAGTTTCTGTATCCCTCCCGAACCTAGGGTTGCCT
CCGGGCTCGGGGGGCGAGGCAACGGGCGGGAGAGGACAGGCTTCCCGAGG
GCTGAAGGCCGACAGGACATGGCAACGACGAGCGGCAGCCGGAGCAAGCG
GAATGGCCGCAAGACCACCGGCCAGGCGGCTGGAACCCAGGGGCTGGCCA
CGGTAACCCGTCGGAGCTATTGGGAGTTTCTGTATCCCTCCCGAACCTAG
GGTTGCCTCCGGGCTCGGGGGGCGAGGCAACGGGCGGGAGAGGACAGGCT
TCCCGAGGGCTGAAGGGAGGTGCCCATGGCGAAAACCCCGGCCGGTACAC
GGGGCACAAGCAGCCAGGTCTGCACGGCAGCAAGAGCTTCGGGGCCTTCT
GGGGAGTGGACCCTCAACAAACACGGGGCGACCAACACCGTCCACCGCGA
TTGCCTCTCCGCAACAGCAACCACCTGAGAAACAGCACGGCCCATGGCCA
CGCCACTGCATCACAAGCGCATCAGAACCCCACCAGCCGCAAAGCGGCCG
CTGGTGCGCGGCAAGGGTCAGGATCAAACCAAGCGGGTGGGGCGAGAGTG
TTGTCGTCGGACGTGGAGGTTGTGCCCGCGGTGAAGGGGGCCGTCGAGCT
CACTCCGGTTCGAGGAATTAGCCGGGTGTGGGCCGGATAAGAGGTGCCCA
TGGCGAAAACCCCGGCCGGTACACGGGGCACAAGCAGCCAGGTCTGCACG
GCAGCAAGAGCTTCGGGGCCTTCTGGGGAGTGGACCCTCAACAAACACGG
GGCGACCAACACCGTCCACCGCGATTGCCTCTCCGCAACAGCAACCACCT
GAGAAACAGCACGGCCCATGGCCACGCCACTGCATCACAAGCGCATCAGA
ACCCCACCAGCCGCAAAGCGGCCGCTGGTGCGCGGCAAGGGTCAGGATCA
AACCAAGCGGGTGGGGCGAGAGTGTTGTCGTCGGACGTGGAGGTTGTGCC
CGCGGTGAAGGGGGCCGTCGAGCTCACTCCGGTTCGAGGAATTAGCCGGG
TGTGGGCCGGATAA
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