mRNA_L-elsbetiae_contig114.1222.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig114.1222.1
Unique NamemRNA_L-elsbetiae_contig114.1222.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig114.1222.1 vs. uniprot
Match: D8LKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS0_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 6.970e-62
Identity = 102/131 (77.86%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 QRYCTDWPEYHWAEVCKRMRLERVRSLDKVYVHGAHGTKCYFLLRGLARVLMPEDDPTNPGGVRYHPDMDLGPGDLFGDDVLEGSGVAKKRNGTVVAVTDCEFAVLDAPDYSDVRDRGLSQMTLDDKCHFL 393
            QR+CT+WPEYHW+EVCK MRLE VRSLDKVYVHGAHGTKCY LLRGLARVL PE+DP N G VRY PD DLGPGDLFGDDVL G     KR  +VVAVTDCEFAVLD  DY+ V+DRGLS+M+LDDKCHFL
Sbjct:  506 QRHCTEWPEYHWSEVCKHMRLEEVRSLDKVYVHGAHGTKCYVLLRGLARVLQPEEDP-NTGVVRYVPDADLGPGDLFGDDVLRG---VPKRPNSVVAVTDCEFAVLDESDYTTVKDRGLSKMSLDDKCHFL 632
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BLAST of mRNA_L-elsbetiae_contig114.1222.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 6.920e-27
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:  397 SVAMMRTSSTYHLYKIALLVKTDDAVKDSVILRCDEPSKALYFIVSGTVEVIQLKKKRVRHRIAANTGTGNTAG 618
            SVAMMR SSTYHLYKIALLVKTDDAVKDS+ILR  EPSKALYF+VSGTVEVIQLK+KRVR++   NTG G  AG
Sbjct:    5 SVAMMRMSSTYHLYKIALLVKTDDAVKDSMILRAGEPSKALYFVVSGTVEVIQLKRKRVRNQAPLNTGAGKAAG 78
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BLAST of mRNA_L-elsbetiae_contig114.1222.1 vs. uniprot
Match: A0A833SFL8_PHYIN (Cyclic nucleotide-binding domain n=7 Tax=Phytophthora TaxID=4783 RepID=A0A833SFL8_PHYIN)

HSP 1 Score: 53.9 bits (128), Expect = 4.970e-5
Identity = 47/204 (23.04%), Postives = 82/204 (40.20%), Query Frame = 1 
Query:   22 PEYHWAEVCKRMRLERVRSLDKVYVHGAHGTKCYFLLRGLARVLMPEDDP--------------------------TNPGGVRYHPDM-DLGPGDLFGDDVLEGSGVAKKRNGTVVA---VTDCEFAVLDAPDYSDVRDRGLSQMTLDDKCHFLKSVAMMRTSSTYHLYKIALLVKTDDAVKDSVILRCDEPSKALYFIVSGTV 543
            PEY   E+C++MRL +V+S   V   G  G +CY ++ GL  V +  + P                           NP  V +   + +LGPG +FG+ VL     + KRN T+ A      C+   L+  DY  +      + +  +    L  + + R        ++   +++     +  + R    +K +Y + SG V
Sbjct:   97 PEYIRREICRQMRLMKVKSGGLVIRQGDTGDRCYIVVDGLVDVYVKMEKPGEVVASPPPMLSTMKPRRTSWRLSSEVNPAPVDFGAMVANLGPGAMFGEIVL--LNPSAKRNATIKASQFTESCDLICLERADYIRLVRTASMEASHYNNAEVLDRMFLFRDWVKLEKMRLVSAMRSRHFTSNDYLYRAGTDAKWMYIVTSGEV 298
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BLAST of mRNA_L-elsbetiae_contig114.1222.1 vs. uniprot
Match: A0A848ZDX4_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848ZDX4_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 8.880e-5
Identity = 34/106 (32.08%), Postives = 51/106 (48.11%), Query Frame = 1 
Query:   37 AEVCKRMRLERVRSLDKVYVHGAHGTKCYFLLRGLARVLMPEDDPTNPGGVRYHPDMDLGPGDLFGD-DVLEGSGVAKKRNGTVVAVTDCEFAVLDAPDYSDVRDR 351
            AE+   +      +   V   G      YF+++G   V +P            H  +DLGPG+ FG+  +LEG     +RN T+  +TDC+F VL  PD+ D+ DR
Sbjct:  274 AEIAALLTPMHAPARYAVVRRGEETEALYFIVQGKVEVDLP------------HGSVDLGPGEFFGEMSLLEGMD---RRNATISTLTDCQFLVLQVPDFHDLVDR 364
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig114.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKS0_ECTSI6.970e-6277.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8M0_ECTSI6.920e-2781.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A833SFL8_PHYIN4.970e-523.04Cyclic nucleotide-binding domain n=7 Tax=Phytophth... [more]
A0A848ZDX4_9PROT8.880e-532.08Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig114contigL-elsbetiae_contig114:1094..3988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue1.2e-53
Seed eggNOG ortholog2880.D8LKS0
Preferred nameCNBD2
KEGG koko:K04739
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007276,GO:0007283,GO:0008150,GO:0017076,GO:0019953,GO:0022414,GO:0030551,GO:0030552,GO:0030554,GO:0032501,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048232,GO:0048609,GO:0051704,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.cAMP-dependent protein kinase regulator activity
EggNOG OGsCOG0664@1,KOG1113@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons5
Model size628
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig114.1222.1prot_L-elsbetiae_contig114.1222.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig114 1094..3987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.6417305-CDS-L-elsbetiae_contig114:1093..11801622815347.6417305-CDS-L-elsbetiae_contig114:1093..1180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 1094..1180 +
1691682852.986496-CDS-L-elsbetiae_contig114:1093..11801691682852.986496-CDS-L-elsbetiae_contig114:1093..1180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 1094..1180 +
1622815347.6533732-CDS-L-elsbetiae_contig114:1982..21201622815347.6533732-CDS-L-elsbetiae_contig114:1982..2120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 1983..2120 +
1691682853.0058987-CDS-L-elsbetiae_contig114:1982..21201691682853.0058987-CDS-L-elsbetiae_contig114:1982..2120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 1983..2120 +
1622815347.6660357-CDS-L-elsbetiae_contig114:2665..28351622815347.6660357-CDS-L-elsbetiae_contig114:2665..2835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 2666..2835 +
1691682853.0156581-CDS-L-elsbetiae_contig114:2665..28351691682853.0156581-CDS-L-elsbetiae_contig114:2665..2835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 2666..2835 +
1622815347.6763723-CDS-L-elsbetiae_contig114:3218..33781622815347.6763723-CDS-L-elsbetiae_contig114:3218..3378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 3219..3378 +
1691682853.0243254-CDS-L-elsbetiae_contig114:3218..33781691682853.0243254-CDS-L-elsbetiae_contig114:3218..3378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 3219..3378 +
1622815347.687848-CDS-L-elsbetiae_contig114:3915..39871622815347.687848-CDS-L-elsbetiae_contig114:3915..3987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 3916..3987 +
1691682853.0321155-CDS-L-elsbetiae_contig114:3915..39871691682853.0321155-CDS-L-elsbetiae_contig114:3915..3987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig114 3916..3987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig114.1222.1

>prot_L-elsbetiae_contig114.1222.1 ID=prot_L-elsbetiae_contig114.1222.1|Name=mRNA_L-elsbetiae_contig114.1222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
QRYCTDWPEYHWAEVCKRMRLERVRSLDKVYVHGAHGTKCYFLLRGLARV
LMPEDDPTNPGGVRYHPDMDLGPGDLFGDDVLEGSGVAKKRNGTVVAVTD
CEFAVLDAPDYSDVRDRGLSQMTLDDKCHFLKSVAMMRTSSTYHLYKIAL
LVKTDDAVKDSVILRCDEPSKALYFIVSGTVEVIQLKKKRVRHRIAANTG
TGNTAGTTN
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mRNA from alignment at L-elsbetiae_contig114:1094..3988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig114.1222.1 ID=mRNA_L-elsbetiae_contig114.1222.1|Name=mRNA_L-elsbetiae_contig114.1222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2895bp|location=Sequence derived from alignment at L-elsbetiae_contig114:1094..3988+ (Laminarionema elsbetiae ELsaHSoW15)
CAACGCTATTGCACCGACTGGCCGGAGTACCACTGGGCAGAGGTGTGCAA
GCGCATGCGGCTAGAGCGAGTTCGGAGCTTGGATAAGGTGGGCACTGGCG
TTCAAAGACAAAATAAAAGATGGTGCGAGGCACGAGCCAAAGAGCACGCG
CGTTCCATCACATTACAGTACATCCACGAGAGCAGAAAGGCTTCCATCTG
TGCCGGTTGACGGAGACAAGGGACCTTCAGCCATGTGATAACATGCCAAT
CACCTGGGTGTATTGGACTACGAAAACAAATGTGGGGTCGTTTGGGAACC
ACCAGTGCCGTACATGGGGTGGTCGGCACCCTCTGGATCAAAATTTGCTC
TGCAGCTGTTGTTCGAGGGAAACCAAAGGAAGGAGAAGCAATCAATACCT
CGTGCGCGCATGGCGCCAAACAACGGCCGTTCTTTCAACTTCCGGCGCGC
GAACGGGCTCGTTTTTCTCTCTCCGAAAAAAATCATGCATGGAGAGGGGA
TAATGTATCCCGAAACGGAACAAATGTTTCTCGAAGTGTTTCTCGAAAAG
ATCTCTCGCCGATATCGGATTGGGCAAGAACACCACCCACTGGTCGACGT
TTTTGCCAACCGCTCGTAGTATGAACTAAAAACAAAAAATCGTTCTTGCG
GTTTGCGCCCCCGTTGTTCGGGGGACTAGGCGAAAAACCCCAGTAGTCGA
ATGGCCTTTTCGTCGTACAGTAGAAACGTACTATTTCATACTCCGCGTGA
GCGAATCGCTGCAAACACCGTGGTATACGAAATCACCCCTCTGCGTTGGC
GTTGTCGACCCGGGCTAGCCGGAATGAAATGACTCGAGCGGTGTCTGTTC
CTACTCGTCTCCCCTCCCCCGCTATCCGGCCTCCGGCAGGTGTACGTGCA
CGGCGCCCACGGCACCAAGTGCTACTTCCTTCTACGAGGCCTGGCGAGGG
TTTTAATGCCGGAGGATGATCCCACCAACCCCGGGGGTGTCCGCTACCAC
CCCGACATGGACCTTGGACCTGGAGACGTGAGAAAAAGAGGGAGAGGTTC
AGTTGAGGGATTTGGTGGTTTGTTGTTTTGCTCGGGTTTCTTCTTGGGCC
GGTAATTTTTCCTGGCTCGGGTTTCTCCTATGGCTTAGGGTTTTTCAGCA
AGATGTTACCTGTCGACATTAAAAGTCTTGCTTTCCACGCGGATAGATCT
GTGTTTGCCTCGGTCGCTCTTGGTCGCTTTGCTGACCGTTTCATCTTCGT
TGTGATGAGGCATTCTCGCTCGTCCGCCCGGCGGAGACGAACTTTGAACC
GACACACTTTGTTGCTGTACTTTCGAGACATTGTCGCTCTGGCGTTCTTA
GGGCACCTCTTGGCCTGGCTTGGAGAAGGAAGTATGTACTGTGTGTGATG
TAGTATAAATTCTCGCTGGCTGGTTATTTTTTGCTCGTGAGAGCACCGTA
ACTGGCCACTTCGTCTCTGATCGTGGGTGGACTCGACTCCTGCTTTTGTC
GATCACACCACGCTCGCTCGCCCGCGCCGTGCCGTCTCTTTGTGCCGCGC
CACTTCTGTTTGCCGTTTGCAGCTGTTTGGCGACGACGTGCTGGAAGGGA
GCGGCGTGGCGAAGAAGCGGAACGGCACGGTCGTCGCGGTCACGGACTGC
GAGTTTGCCGTGCTGGACGCGCCGGACTACAGCGACGTCAGAGATCGAGG
GCTGTCCCAGATGACTCTGGACGACAAATGCCACTTCCTCAAGTAAGTCA
GCCAATTAGACCACTGGGACTGCCTACGCCGGAAATTAAGTTTATCTAGG
AAAATAACCCTAACCCTAACCCTAACCCCAACCCCAACCATCGACCCCCC
GTTTCCCGGTTTCTATACTTTATCTCATATTTTAGCTGAAGACGAAAACC
GTCCGTAGACTACTAGACCACCCTGCTGAACACTCTCCATGGAAGCCATG
CTGTAGCTATTTTCAACCGGCGTCCAGCCCTGCTTACTCCAAGCTGTGTA
TGATTGCATCCTATGCTTAGCTTTGAAGCGGCATATTGCTTCGTCGTGAG
TCCAATTTCGTCCGGTTTCATTGATGCCTCTGTCCTCCCCGATGGTGCTC
TGGCTGGTTAACCGATGCGATGCAGGAGCGTCGCGATGATGAGAACAAGC
TCGACCTACCACCTGTACAAGATCGCCCTGCTGGTCAAGACTGACGACGC
CGTCAAAGACAGCGTGATCCTGCGGTGCGACGAGCCCTCCAAGGCTCTGT
ACTTCATCGTCTCGGGGACCGTCGAAGTCATACAGGTACGTAGCGTGCAC
GAGACCGGCGCTTAGCGTACTTGTTGGCGCCAAGAACTTGTGTGTTCTTG
CACATCACCCCCCCTTCCCCCTCCCTGGACACGTGTTCCTCCCTCAGGTT
TGCTCGTGCGGGCTTGGTCTGGAGGGTCCGGGGTTAGACTAGTGTACACC
GTAGTTTCATCCGAATGTCAGCTGTCGAGAAAAAAAGCATGGTTGGGCCT
TTGCTCCGTTGGGATATGCGTTTGCACGCACGCTGTGGCCGCCCCAATGC
TGCTGGAGAAGGTCATCAGCGATTTACGTAGGCACCAGAGAGGCTTGCCT
TTCGGTGCTCGGGGATTCTTGAATAGACGCAGATCAAAGATTGGGACTCA
AAGCTTTGTGCTGCTCGAATTCTGACTCTGTGAAAGGGTGAAGCGTGCCT
TGCTGCCATTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
CTGCTGCTGCTGCTGCTACTGCTGCTCGTGGCTATAATGGCTTCCTCTTT
TCGTTTCCCGTTCTGCCTGCAGTTGAAAAAGAAGCGAGTTAGGCATCGAA
TCGCCGCCAACACTGGGACTGGGAACACGGCTGGCACGACTAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig114:1094..3988+

>mRNA_L-elsbetiae_contig114.1222.1 ID=mRNA_L-elsbetiae_contig114.1222.1|Name=mRNA_L-elsbetiae_contig114.1222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig114:1094..3988+ (Laminarionema elsbetiae ELsaHSoW15)
CAACGCTATTGCACCGACTGGCCGGAGTACCACTGGGCAGAGGTGTGCAA
GCGCATGCGGCTAGAGCGAGTTCGGAGCTTGGATAAGCAACGCTATTGCA
CCGACTGGCCGGAGTACCACTGGGCAGAGGTGTGCAAGCGCATGCGGCTA
GAGCGAGTTCGGAGCTTGGATAAGGTGTACGTGCACGGCGCCCACGGCAC
CAAGTGCTACTTCCTTCTACGAGGCCTGGCGAGGGTTTTAATGCCGGAGG
ATGATCCCACCAACCCCGGGGGTGTCCGCTACCACCCCGACATGGACCTT
GGACCTGGAGACGTGTACGTGCACGGCGCCCACGGCACCAAGTGCTACTT
CCTTCTACGAGGCCTGGCGAGGGTTTTAATGCCGGAGGATGATCCCACCA
ACCCCGGGGGTGTCCGCTACCACCCCGACATGGACCTTGGACCTGGAGAC
CTGTTTGGCGACGACGTGCTGGAAGGGAGCGGCGTGGCGAAGAAGCGGAA
CGGCACGGTCGTCGCGGTCACGGACTGCGAGTTTGCCGTGCTGGACGCGC
CGGACTACAGCGACGTCAGAGATCGAGGGCTGTCCCAGATGACTCTGGAC
GACAAATGCCACTTCCTCAACTGTTTGGCGACGACGTGCTGGAAGGGAGC
GGCGTGGCGAAGAAGCGGAACGGCACGGTCGTCGCGGTCACGGACTGCGA
GTTTGCCGTGCTGGACGCGCCGGACTACAGCGACGTCAGAGATCGAGGGC
TGTCCCAGATGACTCTGGACGACAAATGCCACTTCCTCAAGAGCGTCGCG
ATGATGAGAACAAGCTCGACCTACCACCTGTACAAGATCGCCCTGCTGGT
CAAGACTGACGACGCCGTCAAAGACAGCGTGATCCTGCGGTGCGACGAGC
CCTCCAAGGCTCTGTACTTCATCGTCTCGGGGACCGTCGAAGTCATACAG
GAGCGTCGCGATGATGAGAACAAGCTCGACCTACCACCTGTACAAGATCG
CCCTGCTGGTCAAGACTGACGACGCCGTCAAAGACAGCGTGATCCTGCGG
TGCGACGAGCCCTCCAAGGCTCTGTACTTCATCGTCTCGGGGACCGTCGA
AGTCATACAGTTGAAAAAGAAGCGAGTTAGGCATCGAATCGCCGCCAACA
CTGGGACTGGGAACACGGCTGGCACGACTAACTTGAAAAAGAAGCGAGTT
AGGCATCGAATCGCCGCCAACACTGGGACTGGGAACACGGCTGGCACGAC
TAAC
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