mRNA_L-elsbetiae_contig11204.1085.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11204.1085.1
Unique NamemRNA_L-elsbetiae_contig11204.1085.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11204.1085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11204contigL-elsbetiae_contig11204:1692..2186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size497
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815333.8652966-CDS-L-elsbetiae_contig11204:1691..20271622815333.8652966-CDS-L-elsbetiae_contig11204:1691..2027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11204 1692..2027 +
1691682844.8484251-CDS-L-elsbetiae_contig11204:1691..20271691682844.8484251-CDS-L-elsbetiae_contig11204:1691..2027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11204 1692..2027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815333.8783698-UTR-L-elsbetiae_contig11204:2027..21861622815333.8783698-UTR-L-elsbetiae_contig11204:2027..2186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11204 2028..2186 +
1691682844.8649426-UTR-L-elsbetiae_contig11204:2027..21861691682844.8649426-UTR-L-elsbetiae_contig11204:2027..2186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11204 2028..2186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11204.1085.1prot_L-elsbetiae_contig11204.1085.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11204 1692..2027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11204.1085.1

>prot_L-elsbetiae_contig11204.1085.1 ID=prot_L-elsbetiae_contig11204.1085.1|Name=mRNA_L-elsbetiae_contig11204.1085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
LVAVRRFADGAFICSRPHPRTPKQAGKASFCRRVCHATRGTGLGKEVGVY
VYEHLLLRVTYAFDCVVRCVGFPFGQMCTGRFCGAWCSRRKVVIYSLPLG
PHDLIPSRLFL*
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mRNA from alignment at L-elsbetiae_contig11204:1692..2186+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11204.1085.1 ID=mRNA_L-elsbetiae_contig11204.1085.1|Name=mRNA_L-elsbetiae_contig11204.1085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=495bp|location=Sequence derived from alignment at L-elsbetiae_contig11204:1692..2186+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGTTGCTGTGCGGCGCTTTGCGGATGGTGCATTTATTTGTTCCCGTCC
CCATCCCCGTACACCAAAGCAAGCGGGAAAGGCATCTTTCTGTCGGCGCG
TCTGCCACGCGACAAGGGGAACGGGACTGGGAAAAGAGGTAGGTGTGTAT
GTGTACGAACACCTGTTGTTGCGGGTTACTTACGCGTTTGATTGTGTTGT
GCGCTGCGTCGGGTTCCCGTTTGGACAGATGTGTACCGGTCGTTTTTGTG
GAGCCTGGTGCAGCAGGAGGAAAGTTGTTATTTATTCCTTACCTTTGGGA
CCTCATGACCTCATACCCTCTCGGCTTTTTCTCTGAAACGATCGGAAAAG
GCACACATCCACATTCACCACAGAAGTTTGAATCAATCCGCCCGCAGGAC
CGCAGTCGAAGATAGCATGAGGAAGCAGCTCAGACCTCGCTAGTTACTTG
CTAATTTCAGCAGCAGGTAAATAGTGTTCACGCGTTGAAAAATGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11204:1692..2186+

>mRNA_L-elsbetiae_contig11204.1085.1 ID=mRNA_L-elsbetiae_contig11204.1085.1|Name=mRNA_L-elsbetiae_contig11204.1085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig11204:1692..2186+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGTTGCTGTGCGGCGCTTTGCGGATGGTGCATTTATTTGTTCCCGTCC
CCATCCCCGTACACCAAAGCAAGCGGGAAAGGCATCTTTCTGTCGGCGCG
TCTGCCACGCGACAAGGGGAACGGGACTGGGAAAAGAGGTAGGTGTGTAT
GTGTACGAACACCTGTTGTTGCGGGTTACTTACGCGTTTGATTGTGTTGT
GCGCTGCGTCGGGTTCCCGTTTGGACAGATGTGTACCGGTCGTTTTTGTG
GAGCCTGGTGCAGCAGGAGGAAAGTTGTTATTTATTCCTTACCTTTGGGA
CCTCATGACCTCATACCCTCTCGGCTTTTTCTCTGACTCGTTGCTGTGCG
GCGCTTTGCGGATGGTGCATTTATTTGTTCCCGTCCCCATCCCCGTACAC
CAAAGCAAGCGGGAAAGGCATCTTTCTGTCGGCGCGTCTGCCACGCGACA
AGGGGAACGGGACTGGGAAAAGAGGTAGGTGTGTATGTGTACGAACACCT
GTTGTTGCGGGTTACTTACGCGTTTGATTGTGTTGTGCGCTGCGTCGGGT
TCCCGTTTGGACAGATGTGTACCGGTCGTTTTTGTGGAGCCTGGTGCAGC
AGGAGGAAAGTTGTTATTTATTCCTTACCTTTGGGACCTCATGACCTCAT
ACCCTCTCGGCTTTTTCTCTGA
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