mRNA_L-elsbetiae_contig11200.1083.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11200.1083.1
Unique NamemRNA_L-elsbetiae_contig11200.1083.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11200.1083.1 vs. uniprot
Match: D8LAW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.160e-25
Identity = 92/215 (42.79%), Postives = 108/215 (50.23%), Query Frame = -2 
Query:    3 DASPRPRDTAAAPP-----LPTQEVARVYPLGRDTASAGSSDKTVRGMETPGGDGGSAGALPVAGGEGKQLAAVPQAFPSFPEEEEWLEEGDGRDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQAVAVAAGNGRRESAAELAVHLISAHREDVRSALAAARKDMDLVSKADKDRQPAALMEYAREVEGVLGQRMAAGAKL 632
            +  P P +T  APP     +PT EVAR+YP  RD A AGS  + +R  ET                                  E W E+ D    F                                        +  V+ A G GRRESAAELA+HLISAHREDVRSALAAARKDMDLVSKAD+DR+PAALMEYAR+VEGVLG+R+AAGA+L
Sbjct:  402 EGHPPPSNTGGAPPATAALVPTVEVARLYPGRRDAADAGSGTRRIR-AETL---------------------------------EAWNEDDDPVGSFSASARRVEIDCG----------------------------ENQVSAAEG-GRRESAAELAMHLISAHREDVRSALAAARKDMDLVSKADQDRRPAALMEYARDVEGVLGERLAAGARL 553
[Close]
BLAST of mRNA_L-elsbetiae_contig11200.1083.1 vs. uniprot
Match: A0A6H5JYC8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.020e-25
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -2 
Query:    3 AVAAGNGRRESAAELAVHLISAHREDVRSALAAARKDMDLVSKADKDRQPAALMEYAREVEGVLGQRMAAGAKL 224
            A  A  GRRESAAELA+HLISAHREDVRSALAAARKDMDLVSKAD+DR+PAALMEYAREVEGVLG+R+AAGA+L
Sbjct:  454 ASVAEGGRRESAAELAMHLISAHREDVRSALAAARKDMDLVSKADQDRRPAALMEYAREVEGVLGERLAAGARL 527
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11200.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAW3_ECTSI4.160e-2542.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYC8_9PHAE5.020e-2586.49SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11200contigL-elsbetiae_contig11200:921..2127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1208
Cds size1206
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815333.762288-CDS-L-elsbetiae_contig11200:920..21261622815333.762288-CDS-L-elsbetiae_contig11200:920..2126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11200 921..2126 +
1691682844.8032358-CDS-L-elsbetiae_contig11200:920..21261691682844.8032358-CDS-L-elsbetiae_contig11200:920..2126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11200 921..2126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11200.1083.1prot_L-elsbetiae_contig11200.1083.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11200 921..2126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11200.1083.1

>prot_L-elsbetiae_contig11200.1083.1 ID=prot_L-elsbetiae_contig11200.1083.1|Name=mRNA_L-elsbetiae_contig11200.1083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=402bp
LSLAPAAIRCPSTPSTSRAYSMRAAGCRSLSALDTRSMSFRAAASALLTS
SLCAEMRCTANSAALSLRPFPAATATAWSSRPSKPSRPSKLSRPSKPSRP
SKPSRLSEPSRPSKPSRPSKPSRPSPSSSHSSSSGNDGNACGTAASCFPS
PPATGKAPAEPPSPPGVSIPRTVLSLLPADAVSRPNGYTRATSWVGSGGA
AAVSRGRGDASRNPSGDGCFLGGTLSPRGGCSWAPHGDWGATVVTPAIIA
CPLKVPARPVQFSGAVAGLRIDEGAGINRCSSAAAVEEEEEEGEEEDNLV
RAPASSSCTGSNTFRCSCPYDDSVLSRFGRGGGLSGGAPGAPPASQPPLP
ASRRSSGKTRALDSCSTASTATPPPLSSSAAAGPPTGGCCLTLTAPVDDV
RG
back to top

mRNA from alignment at L-elsbetiae_contig11200:921..2127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11200.1083.1 ID=mRNA_L-elsbetiae_contig11200.1083.1|Name=mRNA_L-elsbetiae_contig11200.1083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1207bp|location=Sequence derived from alignment at L-elsbetiae_contig11200:921..2127+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCTTGGCGCCTGCCGCCATACGCTGTCCCAGCACCCCTTCCACTTC
CCGGGCGTACTCCATGAGGGCGGCCGGCTGCCGGTCCTTGTCCGCCTTGG
ACACGAGGTCCATGTCCTTCCGAGCGGCCGCCAGCGCGCTCCTGACGTCC
TCCCTGTGCGCCGAGATGAGGTGCACGGCTAACTCTGCCGCGCTCTCCCT
CCGGCCGTTCCCCGCCGCCACCGCCACCGCCTGGTCATCACGGCCATCAA
AGCCATCACGGCCATCAAAGCTATCACGGCCATCAAAGCCATCACGGCCA
TCAAAGCCATCACGGCTATCAGAGCCATCACGGCCATCGAAGCCATCACG
GCCATCAAAGCCATCACGGCCATCGCCCTCTTCCAGCCACTCCTCTTCCT
CTGGAAACGATGGAAACGCCTGCGGTACCGCTGCGAGCTGCTTCCCCTCC
CCGCCGGCGACTGGCAAGGCCCCTGCCGAACCTCCGTCTCCGCCCGGCGT
CTCCATCCCCCGCACCGTTTTATCACTGCTGCCTGCGGACGCCGTGTCTC
GCCCCAACGGGTACACGCGCGCCACCTCCTGGGTCGGAAGTGGAGGAGCG
GCGGCGGTGTCCCGGGGCCGGGGCGACGCGTCTCGGAACCCTTCCGGGGA
CGGATGCTTCCTCGGTGGCACGCTGTCCCCGCGAGGGGGGTGCTCTTGGG
CACCCCACGGGGACTGGGGGGCGACGGTCGTCACGCCGGCGATCATCGCG
TGCCCGCTAAAAGTTCCGGCCCGCCCGGTGCAGTTCTCCGGGGCAGTGGC
GGGGTTGCGGATCGACGAGGGCGCCGGCATCAACCGGTGCTCGTCGGCTG
CAGCGGTGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGATAACCTGGTC
CGCGCTCCCGCCTCGTCCAGCTGCACCGGTTCCAACACATTCCGGTGCAG
CTGCCCGTACGACGACTCGGTGTTGAGTCGTTTTGGTCGCGGCGGCGGTC
TCTCCGGCGGCGCGCCCGGCGCACCACCGGCATCCCAGCCACCACTGCCG
GCATCCCGCCGCTCCTCCGGGAAGACCCGGGCGCTCGATTCGTGCTCGAC
CGCCAGTACGGCGACGCCGCCGCCGCTCTCTTCTTCTGCTGCTGCGGGCC
CGCCGACCGGCGGCTGCTGCCTCACTCTAACGGCCCCGGTTGACGACGTC
CGCGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11200:921..2127+

>mRNA_L-elsbetiae_contig11200.1083.1 ID=mRNA_L-elsbetiae_contig11200.1083.1|Name=mRNA_L-elsbetiae_contig11200.1083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2412bp|location=Sequence derived from alignment at L-elsbetiae_contig11200:921..2127+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCTTGGCGCCTGCCGCCATACGCTGTCCCAGCACCCCTTCCACTTC
CCGGGCGTACTCCATGAGGGCGGCCGGCTGCCGGTCCTTGTCCGCCTTGG
ACACGAGGTCCATGTCCTTCCGAGCGGCCGCCAGCGCGCTCCTGACGTCC
TCCCTGTGCGCCGAGATGAGGTGCACGGCTAACTCTGCCGCGCTCTCCCT
CCGGCCGTTCCCCGCCGCCACCGCCACCGCCTGGTCATCACGGCCATCAA
AGCCATCACGGCCATCAAAGCTATCACGGCCATCAAAGCCATCACGGCCA
TCAAAGCCATCACGGCTATCAGAGCCATCACGGCCATCGAAGCCATCACG
GCCATCAAAGCCATCACGGCCATCGCCCTCTTCCAGCCACTCCTCTTCCT
CTGGAAACGATGGAAACGCCTGCGGTACCGCTGCGAGCTGCTTCCCCTCC
CCGCCGGCGACTGGCAAGGCCCCTGCCGAACCTCCGTCTCCGCCCGGCGT
CTCCATCCCCCGCACCGTTTTATCACTGCTGCCTGCGGACGCCGTGTCTC
GCCCCAACGGGTACACGCGCGCCACCTCCTGGGTCGGAAGTGGAGGAGCG
GCGGCGGTGTCCCGGGGCCGGGGCGACGCGTCTCGGAACCCTTCCGGGGA
CGGATGCTTCCTCGGTGGCACGCTGTCCCCGCGAGGGGGGTGCTCTTGGG
CACCCCACGGGGACTGGGGGGCGACGGTCGTCACGCCGGCGATCATCGCG
TGCCCGCTAAAAGTTCCGGCCCGCCCGGTGCAGTTCTCCGGGGCAGTGGC
GGGGTTGCGGATCGACGAGGGCGCCGGCATCAACCGGTGCTCGTCGGCTG
CAGCGGTGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGATAACCTGGTC
CGCGCTCCCGCCTCGTCCAGCTGCACCGGTTCCAACACATTCCGGTGCAG
CTGCCCGTACGACGACTCGGTGTTGAGTCGTTTTGGTCGCGGCGGCGGTC
TCTCCGGCGGCGCGCCCGGCGCACCACCGGCATCCCAGCCACCACTGCCG
GCATCCCGCCGCTCCTCCGGGAAGACCCGGGCGCTCGATTCGTGCTCGAC
CGCCAGTACGGCGACGCCGCCGCCGCTCTCTTCTTCTGCTGCTGCGGGCC
CGCCGACCGGCGGCTGCTGCCTCACTCTAACGGCCCCGGTTGACGACGTC
CGCGGTCTCAGCTTGGCGCCTGCCGCCATACGCTGTCCCAGCACCCCTTC
CACTTCCCGGGCGTACTCCATGAGGGCGGCCGGCTGCCGGTCCTTGTCCG
CCTTGGACACGAGGTCCATGTCCTTCCGAGCGGCCGCCAGCGCGCTCCTG
ACGTCCTCCCTGTGCGCCGAGATGAGGTGCACGGCTAACTCTGCCGCGCT
CTCCCTCCGGCCGTTCCCCGCCGCCACCGCCACCGCCTGGTCATCACGGC
CATCAAAGCCATCACGGCCATCAAAGCTATCACGGCCATCAAAGCCATCA
CGGCCATCAAAGCCATCACGGCTATCAGAGCCATCACGGCCATCGAAGCC
ATCACGGCCATCAAAGCCATCACGGCCATCGCCCTCTTCCAGCCACTCCT
CTTCCTCTGGAAACGATGGAAACGCCTGCGGTACCGCTGCGAGCTGCTTC
CCCTCCCCGCCGGCGACTGGCAAGGCCCCTGCCGAACCTCCGTCTCCGCC
CGGCGTCTCCATCCCCCGCACCGTTTTATCACTGCTGCCTGCGGACGCCG
TGTCTCGCCCCAACGGGTACACGCGCGCCACCTCCTGGGTCGGAAGTGGA
GGAGCGGCGGCGGTGTCCCGGGGCCGGGGCGACGCGTCTCGGAACCCTTC
CGGGGACGGATGCTTCCTCGGTGGCACGCTGTCCCCGCGAGGGGGGTGCT
CTTGGGCACCCCACGGGGACTGGGGGGCGACGGTCGTCACGCCGGCGATC
ATCGCGTGCCCGCTAAAAGTTCCGGCCCGCCCGGTGCAGTTCTCCGGGGC
AGTGGCGGGGTTGCGGATCGACGAGGGCGCCGGCATCAACCGGTGCTCGT
CGGCTGCAGCGGTGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGATAAC
CTGGTCCGCGCTCCCGCCTCGTCCAGCTGCACCGGTTCCAACACATTCCG
GTGCAGCTGCCCGTACGACGACTCGGTGTTGAGTCGTTTTGGTCGCGGCG
GCGGTCTCTCCGGCGGCGCGCCCGGCGCACCACCGGCATCCCAGCCACCA
CTGCCGGCATCCCGCCGCTCCTCCGGGAAGACCCGGGCGCTCGATTCGTG
CTCGACCGCCAGTACGGCGACGCCGCCGCCGCTCTCTTCTTCTGCTGCTG
CGGGCCCGCCGACCGGCGGCTGCTGCCTCACTCTAACGGCCCCGGTTGAC
GACGTCCGCGGT
back to top