mRNA_L-elsbetiae_contig112.1076.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig112.1076.1
Unique NamemRNA_L-elsbetiae_contig112.1076.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig112.1076.1 vs. uniprot
Match: A0A6H5K707_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K707_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.520e-5
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = -1 
Query:  445 DDFSVEAAEAILAALAAAPAGRAWRRRGWLVLLRARLIAFDK 570
            +DF  E AEAI  ALAAAPAGRAWRRR WL +LRAR     K
Sbjct:  521 EDFPAETAEAIREALAAAPAGRAWRRRAWLAMLRARYFELGK 562
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig112.1076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K707_9PHAE5.520e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig112contigL-elsbetiae_contig112:11300..11871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size572
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.7352324-CDS-L-elsbetiae_contig112:11299..118691622815332.7352324-CDS-L-elsbetiae_contig112:11299..11869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig112 11300..11869 +
1691682844.292095-CDS-L-elsbetiae_contig112:11299..118691691682844.292095-CDS-L-elsbetiae_contig112:11299..11869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig112 11300..11869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig112.1076.1prot_L-elsbetiae_contig112.1076.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig112 11300..11869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig112.1076.1

>prot_L-elsbetiae_contig112.1076.1 ID=prot_L-elsbetiae_contig112.1076.1|Name=mRNA_L-elsbetiae_contig112.1076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
VLVRGRRRGIQGKIHEIVGGDSPPESVVKEAVLATARPLQSSRTVVRRDP
RLGLLHARHASSTKRLIQLRVEVEHVLLLMTLGEPSERAEEVPLLLQVHR
RPCLRQRHQPVRVLHEHPNAQVHARRLRPFFEVALGHLVFFQALDEPALI
ERDQPSAKQHQPAAPPPRTARRSGSKRRQNRLGCFDGEIV
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mRNA from alignment at L-elsbetiae_contig112:11300..11871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig112.1076.1 ID=mRNA_L-elsbetiae_contig112.1076.1|Name=mRNA_L-elsbetiae_contig112.1076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=572bp|location=Sequence derived from alignment at L-elsbetiae_contig112:11300..11871+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCTTGTCCGGGGTAGAAGGAGAGGAATCCAAGGAAAGATCCACGAAAT
TGTTGGCGGAGATTCTCCCCCCGAGAGCGTCGTCAAGGAAGCCGTGCTTG
CGACTGCACGGCCTCTTCAATCCTCGCGCACAGTAGTCCGCCGAGACCCG
CGGCTGGGTTTGTTGCACGCCCGTCACGCCTCCTCCACGAAGCGCTTGAT
CCAGCTCCGTGTCGAAGTCGAACACGTTCTTCTCCTGATGACGCTCGGGG
AGCCCTCCGAGCGGGCCGAAGAAGTCCCTCTCCTCCTCCAAGTCCATCGG
CGCCCATGTCTGCGGCAGCGACATCAACCCGTTCGCGTCCTGCACGAGCA
TCCCAACGCTCAAGTCCACGCTCGCCGGCTCCGCCCCTTCTTCGAGGTAG
CCCTTGGACACCTCGTCTTCTTCCAGGCCCTCGACGAGCCTGCGCTTATC
GAACGCGATCAGCCGAGCGCGAAGCAGCACCAGCCAGCCGCGCCGCCTCC
ACGCACGGCCCGCCGGAGCGGCAGCAAGCGCCGCCAGAATCGCCTCGGCT
GCTTCGACGGAGAAATCGTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig112:11300..11871+

>mRNA_L-elsbetiae_contig112.1076.1 ID=mRNA_L-elsbetiae_contig112.1076.1|Name=mRNA_L-elsbetiae_contig112.1076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig112:11300..11871+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCTTGTCCGGGGTAGAAGGAGAGGAATCCAAGGAAAGATCCACGAAAT
TGTTGGCGGAGATTCTCCCCCCGAGAGCGTCGTCAAGGAAGCCGTGCTTG
CGACTGCACGGCCTCTTCAATCCTCGCGCACAGTAGTCCGCCGAGACCCG
CGGCTGGGTTTGTTGCACGCCCGTCACGCCTCCTCCACGAAGCGCTTGAT
CCAGCTCCGTGTCGAAGTCGAACACGTTCTTCTCCTGATGACGCTCGGGG
AGCCCTCCGAGCGGGCCGAAGAAGTCCCTCTCCTCCTCCAAGTCCATCGG
CGCCCATGTCTGCGGCAGCGACATCAACCCGTTCGCGTCCTGCACGAGCA
TCCCAACGCTCAAGTCCACGCTCGCCGGCTCCGCCCCTTCTTCGAGGTAG
CCCTTGGACACCTCGTCTTCTTCCAGGCCCTCGACGAGCCTGCGCTTATC
GAACGCGATCAGCCGAGCGCGAAGCAGCACCAGCCAGCCGCGCCGCCTCC
ACGCACGGCCCGCCGGAGCGGCAGCAAGCGCCGCCAGAATCGCCTCGGCT
GCTTCGACGGAGAAATCGTCGTCCTTGTCCGGGGTAGAAGGAGAGGAATC
CAAGGAAAGATCCACGAAATTGTTGGCGGAGATTCTCCCCCCGAGAGCGT
CGTCAAGGAAGCCGTGCTTGCGACTGCACGGCCTCTTCAATCCTCGCGCA
CAGTAGTCCGCCGAGACCCGCGGCTGGGTTTGTTGCACGCCCGTCACGCC
TCCTCCACGAAGCGCTTGATCCAGCTCCGTGTCGAAGTCGAACACGTTCT
TCTCCTGATGACGCTCGGGGAGCCCTCCGAGCGGGCCGAAGAAGTCCCTC
TCCTCCTCCAAGTCCATCGGCGCCCATGTCTGCGGCAGCGACATCAACCC
GTTCGCGTCCTGCACGAGCATCCCAACGCTCAAGTCCACGCTCGCCGGCT
CCGCCCCTTCTTCGAGGTAGCCCTTGGACACCTCGTCTTCTTCCAGGCCC
TCGACGAGCCTGCGCTTATCGAACGCGATCAGCCGAGCGCGAAGCAGCAC
CAGCCAGCCGCGCCGCCTCCACGCACGGCCCGCCGGAGCGGCAGCAAGCG
CCGCCAGAATCGCCTCGGCTGCTTCGACGGAGAAATCGTC
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