mRNA_L-elsbetiae_contig1109.976.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1109.976.1
Unique NamemRNA_L-elsbetiae_contig1109.976.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1109.976.1 vs. uniprot
Match: D7FMX3_ECTSI (Similar to NLR family, pyrin domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX3_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 4.430e-116
Identity = 220/392 (56.12%), Postives = 265/392 (67.60%), Query Frame = 3 
Query:    3 SSLSLTACSIGNVGAVALAKACYRKGLEELCLXXXXXXXXXXXXLLVALGEGTGTG---LRKLVLSGNRIGGIVAFARALRNVITRREGSLEVLELSRCSIADSDMAVLCKGLADARCRIRLLLLSNNVDLRDQGAAVLAETLRARSEVRTRAHRPSLQVDLGGCSIHTWGCLAVAACILDADDAES----GGPLVL-----NLGNNLIKDYGVEAMSCATLGQNYNDHKRRQG----QEHRRSKSPRVLNAFGTNLQNKSSRAVPYGATQINKAIAWAQQSGCQDKEYLCASIVGTKDLPPLTGTPLYAAATATGWPSIRHRSPRRSNPPGPSTWSVVLDGNKASERVVAGQGALAGLGEAALFRGCVLPETVAATKSWTRDAFWSKSEGK 1130
            SSLS TACS+GN GA+A+AKAC    LE+LCL    XXXXXXXX  +ALGEG       LRKLVLSGNRIGG+VA ARALRNV+ RR   LEVLELSRCS+ D D++V+ KGL DARCR+R+L LS N+DLRD+G   LAE LR+RSE+   A + SLQVDL GCS++TWGC A+AA +LD ++  +    G   V+     NLG N IKD GVEAMSCA+LGQ Y DHK+RQ     Q+HR+SKSP VL+A                  +++KA     + G  + E  C     T DLPPLTGTPLY AATA  WP  RH  P+    P  +  SVVLDGN+ S+RV AGQG LAGLGEAALFRGCVLPET+ +   WTR +FW+K+ GK
Sbjct:   52 SSLSATACSLGNGGAMAIAKACCGGNLEKLCLENCGXXXXXXXXXXLALGEGATAKDKQLRKLVLSGNRIGGVVACARALRNVLIRRP--LEVLELSRCSVTDGDLSVISKGLVDARCRLRVLQLSGNIDLRDRGVNDLAEALRSRSEMYHGACQSSLQVDLHGCSVNTWGCRALAASVLDINNDGTHHGVGATAVVRLGTVNLGYNSIKDVGVEAMSCASLGQEYEDHKKRQSNARRQKHRQSKSPGVLDA-----------------ARVHKA----HEFGSGNLELRCEP---TGDLPPLTGTPLYVAATA-AWPDTRHDDPQAKGAPPSTPCSVVLDGNRVSDRVAAGQGGLAGLGEAALFRGCVLPETIVSNTGWTRGSFWTKTRGK 416
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BLAST of mRNA_L-elsbetiae_contig1109.976.1 vs. uniprot
Match: A0A6H5KL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL40_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 6.510e-66
Identity = 162/390 (41.54%), Postives = 213/390 (54.62%), Query Frame = 3 
Query:    3 SSLSLTACSIGNVGAVALAKACYRKGLEELCLXXXXXXXXXXXXLLVALGEGTGTGLRKLVLSGNRIGGIVAFARALRNVITRREGSLEVLELSRCSIADSDMAVLCKGLADARCRIRLLLLSNNVDLRDQGAAVLAETLRARSEVRTRAHRPSL-----QVDLGGCSIHTWGCLAVAACILDADDAES-----GGPLVLNLGNNLIKDYGVEAMSCATLGQNYNDHKRRQG----QEHRRSKSPRVLNAFGTNLQNKSSRAVPYGATQINKAIAWAQQSGCQDKEYLCASIVGTKDLPPLTGTPLYAAATATGWPSIRHRSPRRSNPPGPSTWSVVLDGNKASERVVAGQGALAGLGEAALFRGCVLPETVAATKSWTRDAFWSKSEGK 1130
            SSLS TACS+GN GA+A+AKAC    LE+LCL     XXXXX  L +ALGE                         +RN     + S  VL + R    D  +++  + +   RC I LLL  +    R  G   L++ + +  +        +L     +VDL GCS++TWGC A+AA +LD ++  +        + +NLG N IKD GVEAMSCA+LGQ+Y DHK+RQ     Q+H +SKSP VL+A                  ++++A  +   +    +E        T DLPPLTGTPLYAAATA  WP  RH  PR    P     SV+LDGN+ S+RV AGQG LAGLGEAALFRGCVLPET+ +   WTR +FW+K+ GK
Sbjct:   52 SSLSATACSLGNGGAMAIAKACCGGNLEKLCLDNCGIXXXXXTALALALGE-------------------------VRNA----QASANVLMIPRAGTGDDRISLKGRSVFGGRCVI-LLLEKSRFFCRAIGETELSDNILSVKKSCWAVFILTLTTYTRKVDLHGCSVNTWGCRALAASVLDINNEGTHYGVGATAVTVNLGYNSIKDVGVEAMSCASLGQDYEDHKKRQSNARRQKHHQSKSPGVLDA-----------------ARVHEAHEFGSGNLELRRE-------PTGDLPPLTGTPLYAAATA-AWPDKRHEDPRAKGAP---PCSVLLDGNRVSDRVAAGQGGLAGLGEAALFRGCVLPETIVSNTGWTRGSFWTKTPGK 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1109.976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMX3_ECTSI4.430e-11656.12Similar to NLR family, pyrin domain containing 3 n... [more]
A0A6H5KL40_9PHAE6.510e-6641.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1109contigL-elsbetiae_contig1109:12638..14926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1141
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1109.976.1prot_L-elsbetiae_contig1109.976.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1109 13322..14924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815323.195926-UTR-L-elsbetiae_contig1109:12637..127931622815323.195926-UTR-L-elsbetiae_contig1109:12637..12793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 12638..12793 +
1691682838.4706757-UTR-L-elsbetiae_contig1109:12637..127931691682838.4706757-UTR-L-elsbetiae_contig1109:12637..12793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 12638..12793 +
1622815323.2093215-UTR-L-elsbetiae_contig1109:13013..131261622815323.2093215-UTR-L-elsbetiae_contig1109:13013..13126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 13014..13126 +
1691682838.4796295-UTR-L-elsbetiae_contig1109:13013..131261691682838.4796295-UTR-L-elsbetiae_contig1109:13013..13126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 13014..13126 +
1622815323.2204719-UTR-L-elsbetiae_contig1109:13282..133211622815323.2204719-UTR-L-elsbetiae_contig1109:13282..13321Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 13283..13321 +
1691682838.4914558-UTR-L-elsbetiae_contig1109:13282..133211691682838.4914558-UTR-L-elsbetiae_contig1109:13282..13321Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 13283..13321 +
1622815323.311813-UTR-L-elsbetiae_contig1109:14924..149261622815323.311813-UTR-L-elsbetiae_contig1109:14924..14926Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 14925..14926 +
1691682838.53892-UTR-L-elsbetiae_contig1109:14924..149261691682838.53892-UTR-L-elsbetiae_contig1109:14924..14926Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 14925..14926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815323.2316234-CDS-L-elsbetiae_contig1109:13321..134181622815323.2316234-CDS-L-elsbetiae_contig1109:13321..13418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 13322..13418 +
1691682838.5034447-CDS-L-elsbetiae_contig1109:13321..134181691682838.5034447-CDS-L-elsbetiae_contig1109:13321..13418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 13322..13418 +
1622815323.2426717-CDS-L-elsbetiae_contig1109:13793..138581622815323.2426717-CDS-L-elsbetiae_contig1109:13793..13858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 13794..13858 +
1691682838.5112936-CDS-L-elsbetiae_contig1109:13793..138581691682838.5112936-CDS-L-elsbetiae_contig1109:13793..13858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 13794..13858 +
1622815323.2893045-CDS-L-elsbetiae_contig1109:14072..141681622815323.2893045-CDS-L-elsbetiae_contig1109:14072..14168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 14073..14168 +
1691682838.5192575-CDS-L-elsbetiae_contig1109:14072..141681691682838.5192575-CDS-L-elsbetiae_contig1109:14072..14168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 14073..14168 +
1622815323.299461-CDS-L-elsbetiae_contig1109:14351..149241622815323.299461-CDS-L-elsbetiae_contig1109:14351..14924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 14352..14924 +
1691682838.5277193-CDS-L-elsbetiae_contig1109:14351..149241691682838.5277193-CDS-L-elsbetiae_contig1109:14351..14924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 14352..14924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1109.976.1

>prot_L-elsbetiae_contig1109.976.1 ID=prot_L-elsbetiae_contig1109.976.1|Name=mRNA_L-elsbetiae_contig1109.976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MAVLCKGLADARCRIRLLLLSNNVDLRDQGAAVLAETLRARSEVRTRAHR
PSLQVDLGGCSIHTWGCLAVAACILDADDAESGGPLVLNLGNNLIKDYGV
EAMSCATLGQNYNDHKRRQGQEHRRSKSPRVLNAFGTNLQNKSSRAVPYG
ATQINKAIAWAQQSGCQDKEYLCASIVGTKDLPPLTGTPLYAAATATGWP
SIRHRSPRRSNPPGPSTWSVVLDGNKASERVVAGQGALAGLGEAALFRGC
VLPETVAATKSWTRDAFWSKSEGKVS*
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mRNA from alignment at L-elsbetiae_contig1109:12638..14926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1109.976.1 ID=mRNA_L-elsbetiae_contig1109.976.1|Name=mRNA_L-elsbetiae_contig1109.976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2289bp|location=Sequence derived from alignment at L-elsbetiae_contig1109:12638..14926+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCGAGTTTGTCATTGACGGCCTGTTCTATTGGTAACGTCGGAGCCGTG
GCATTGGCAAAGGCTTGCTATCGCAAGGGTTTGGAAGAGCTTTGCCTCGA
GTCTTGTGCCATCGGCAACGCCGGTGCTGCGGCTTTATTGGTGGCACTGG
GAGAAGGTACAACCAATCAGAAATTAATGCCATTGCTAGAATTTATTCGC
GTTCGGAATACGTGTGCCCAAGTTCATCCGTGAATATTTCGTCTCGTCGG
AATGCATGGGTAAAAGTACTACCACCAGGAACCCAGCGCCGTCCATGTCT
ACCGCTATATTTCTGGTAGCCCCTGCCCGTTTGTTTCGCTCGCTGTAACT
GGTGCTCGCGCTCCGTCCTCGGTAAGGTACTGGCACGGGATTACGCAAGC
TCGTACTGTCTGGGAACCGAATTGGTGGCATCGTCGCCTTCGCGAGAGCT
TTACGGAATGTCATTACCCGCAGAGAGGGCTCTTTAGAGGTGCGTCTTTC
GCCACCTAATGTCTACTGCTTTGTTGCGTGGTGATACAACTAAATAGGTT
TGTTTCACTCAACGCGGGTTCTAGACATGTCACGTCATGAAAAAACATCA
CGGTCGATTATTTTCCCCCCATCGGCTTCTGTCGTGGTGATTCAGGTGCT
TGAGCTATCTCGTTGCAGCATTGCCGATAGTGATATGGCCGTGTTGTGCA
AGGGGCTGGCGGATGCAAGGTGCCGTATCCGACTCCTGCTTTTGTCGAAC
AACGTCGATCTTCGAGATCAAGGGGCAGCCGGTAGGCTTCGAATTATATG
TCTCTCTTGTTGGATGAGCAAAACGCCTTTGACGCATCGACATGAGCACA
AGTTCTACGACACTCCAGCTCCCCTATCGCACACTCCTTCGTTTTTTATC
CCCCTTCATCACCATTTTTTGCCCAGGTTGTAAAGTGAAAACCACAGCAT
CTTTGGTACGAACGACATTGCTGTGCCGCCTTCTGTCGGTCTTGCACGAA
GTAGGTCTACGCATGGTTTCTACAGTTTCTGCATACTGTCGTCAGATAAT
CGAACGTGCGATAAGTCATCTGGGCTGAGAGCAACAATAGACCCAGTATA
CGAAGAGTCGCGTGGAGCCAGGATAAACTTTTCCTTCGACCCGCCCGTTC
TGCCAGTTCTAGCAGAGACGCTGAGGGCGAGGAGCGAAGTTCGCACCAGG
GCGCATCGACCGTCTTTGCAGGTGCTACAGATCTTAACTACGGTATACAC
CATTATAGCTTGTGTACCCGGAAGTTTGATGCACGTTTTCCTCTGCCCGG
CCACGGAGGGAGCCAGCCCCGGAAACTGTCGTTACTATGGCAAACGATCC
AGTCCTCCCTTGTAACAATAACCTCCATGGCCATGTTTGTGCGTTCCACG
AATGTCCATACACCCTCCGGCCATGTGTACCGTAGGTTGATCTTGGAGGC
TGCTCGATTCACACCTGGGGCTGTCTGGCTGTGGCAGCCTGTATTCTGGA
TGCTGACGACGCAGAAAGTGGAGGGCCTTTGGTGAGGCACGAAACATATC
GGCAATGTATGGGAGAACTAGAACCAGGTTATTATTATGAGGAGTACCCG
CTTGCGCTATTTTGCGCCTTCGAGTGGATGCATACATATGGCTGTTGTCT
TTTACTTGTGCCTGAGTATCGGCTGGTCCCTTCCTTTACTCTACGCTCCG
ACCCCACTTCGAAGGTGCTGAACCTAGGCAATAACCTCATCAAAGACTAT
GGCGTAGAAGCTATGTCTTGCGCAACTCTTGGGCAGAACTACAACGATCA
CAAAAGGCGACAGGGTCAAGAACACCGTCGGTCGAAATCTCCTCGTGTTC
TCAACGCGTTTGGTACCAATCTGCAAAACAAATCGTCACGGGCGGTTCCA
TATGGAGCAACGCAAATCAACAAAGCCATTGCTTGGGCGCAACAGTCGGG
GTGCCAGGACAAAGAGTACCTATGTGCCAGCATTGTTGGCACCAAGGACC
TTCCACCGCTGACGGGCACGCCGCTCTACGCCGCGGCTACGGCTACTGGT
TGGCCAAGTATACGACACCGGAGTCCCCGCAGAAGCAACCCCCCCGGACC
GAGTACATGGTCAGTTGTGTTGGACGGGAACAAGGCGTCGGAGAGAGTTG
TAGCTGGGCAAGGTGCCCTTGCTGGGTTGGGAGAAGCGGCGCTGTTTCGG
GGTTGTGTTCTACCTGAAACGGTGGCCGCAACAAAGTCGTGGACAAGGGA
TGCGTTTTGGAGCAAGAGCGAGGGAAAGGTATCGTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1109:12638..14926+

>mRNA_L-elsbetiae_contig1109.976.1 ID=mRNA_L-elsbetiae_contig1109.976.1|Name=mRNA_L-elsbetiae_contig1109.976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig1109:12638..14926+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGTGTTGTGCAAGGGGCTGGCGGATGCAAGGTGCCGTATCCGACT
CCTGCTTTTGTCGAACAACGTCGATCTTCGAGATCAAGGGGCAGCCGATG
GCCGTGTTGTGCAAGGGGCTGGCGGATGCAAGGTGCCGTATCCGACTCCT
GCTTTTGTCGAACAACGTCGATCTTCGAGATCAAGGGGCAGCCGTTCTAG
CAGAGACGCTGAGGGCGAGGAGCGAAGTTCGCACCAGGGCGCATCGACCG
TCTTTGCAGTTCTAGCAGAGACGCTGAGGGCGAGGAGCGAAGTTCGCACC
AGGGCGCATCGACCGTCTTTGCAGGTTGATCTTGGAGGCTGCTCGATTCA
CACCTGGGGCTGTCTGGCTGTGGCAGCCTGTATTCTGGATGCTGACGACG
CAGAAAGTGGAGGGCCTTTGGTTGATCTTGGAGGCTGCTCGATTCACACC
TGGGGCTGTCTGGCTGTGGCAGCCTGTATTCTGGATGCTGACGACGCAGA
AAGTGGAGGGCCTTTGGTGCTGAACCTAGGCAATAACCTCATCAAAGACT
ATGGCGTAGAAGCTATGTCTTGCGCAACTCTTGGGCAGAACTACAACGAT
CACAAAAGGCGACAGGGTCAAGAACACCGTCGGTCGAAATCTCCTCGTGT
TCTCAACGCGTTTGGTACCAATCTGCAAAACAAATCGTCACGGGCGGTTC
CATATGGAGCAACGCAAATCAACAAAGCCATTGCTTGGGCGCAACAGTCG
GGGTGCCAGGACAAAGAGTACCTATGTGCCAGCATTGTTGGCACCAAGGA
CCTTCCACCGCTGACGGGCACGCCGCTCTACGCCGCGGCTACGGCTACTG
GTTGGCCAAGTATACGACACCGGAGTCCCCGCAGAAGCAACCCCCCCGGA
CCGAGTACATGGTCAGTTGTGTTGGACGGGAACAAGGCGTCGGAGAGAGT
TGTAGCTGGGCAAGGTGCCCTTGCTGGGTTGGGAGAAGCGGCGCTGTTTC
GGGGTTGTGTTCTACCTGAAACGGTGGCCGCAACAAAGTCGTGGACAAGG
GATGCGTTTTGGAGCAAGAGCGAGGGAAAGGTATCGTGAGTGCTGAACCT
AGGCAATAACCTCATCAAAGACTATGGCGTAGAAGCTATGTCTTGCGCAA
CTCTTGGGCAGAACTACAACGATCACAAAAGGCGACAGGGTCAAGAACAC
CGTCGGTCGAAATCTCCTCGTGTTCTCAACGCGTTTGGTACCAATCTGCA
AAACAAATCGTCACGGGCGGTTCCATATGGAGCAACGCAAATCAACAAAG
CCATTGCTTGGGCGCAACAGTCGGGGTGCCAGGACAAAGAGTACCTATGT
GCCAGCATTGTTGGCACCAAGGACCTTCCACCGCTGACGGGCACGCCGCT
CTACGCCGCGGCTACGGCTACTGGTTGGCCAAGTATACGACACCGGAGTC
CCCGCAGAAGCAACCCCCCCGGACCGAGTACATGGTCAGTTGTGTTGGAC
GGGAACAAGGCGTCGGAGAGAGTTGTAGCTGGGCAAGGTGCCCTTGCTGG
GTTGGGAGAAGCGGCGCTGTTTCGGGGTTGTGTTCTACCTGAAACGGTGG
CCGCAACAAAGTCGTGGACAAGGGATGCGTTTTGGAGCAAGAGCGAGGGA
AAGGTATCGTGA
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