mRNA_L-elsbetiae_contig11037.936.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11037.936.1
Unique NamemRNA_L-elsbetiae_contig11037.936.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11037.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11037contigL-elsbetiae_contig11037:5626..6396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size771
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.2963617-UTR-L-elsbetiae_contig11037:5625..59041622815319.2963617-UTR-L-elsbetiae_contig11037:5625..5904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11037 5626..5904 +
1691682835.9946856-UTR-L-elsbetiae_contig11037:5625..59041691682835.9946856-UTR-L-elsbetiae_contig11037:5625..5904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11037 5626..5904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.3091245-CDS-L-elsbetiae_contig11037:5904..63961622815319.3091245-CDS-L-elsbetiae_contig11037:5904..6396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11037 5905..6396 +
1691682836.0051742-CDS-L-elsbetiae_contig11037:5904..63961691682836.0051742-CDS-L-elsbetiae_contig11037:5904..6396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11037 5905..6396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11037.936.1prot_L-elsbetiae_contig11037.936.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11037 5905..6396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11037.936.1

>prot_L-elsbetiae_contig11037.936.1 ID=prot_L-elsbetiae_contig11037.936.1|Name=mRNA_L-elsbetiae_contig11037.936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MHVLYSAYIPPRHQHHHHHPQPRHARAGTEAPRRRNKDCKTYVLCSHPCT
RSKQPLVVIPSPSVQPLGLPTPTHTPLAAHRRAHSHALRRRPIKFEFQLT
YSQSHISGFNQSISPKNSTLSHDPTPTPHPDRQHSVPARAAADLHSAAST
YSSHLLADPPRAAH
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mRNA from alignment at L-elsbetiae_contig11037:5626..6396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11037.936.1 ID=mRNA_L-elsbetiae_contig11037.936.1|Name=mRNA_L-elsbetiae_contig11037.936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=771bp|location=Sequence derived from alignment at L-elsbetiae_contig11037:5626..6396+ (Laminarionema elsbetiae ELsaHSoW15)
GGATAGTTGCCCCATTTATCATCGGCATTTTCTGCCCTCCGAAGGGGTTT
TTCTCCGCGAACCAGGCATAAAACCAATCCCCACCAACTTTTCTGAGACC
GTGTTGTAAGAACTGGCCTAATAGCGGAAAAGCGTTATGATGAGAGACGA
GACGCACCCCACAACGGGCCGGCGAGGGGGGGGCATCAGTACAGGCTGGT
GGCGCTGATCGAAGAGCTCTTCTCAAGAGACACCAAACTGAAACATGAAA
ATGAAAATGCACCCACCGCACCGCACTTAATGCACGTACTTTACTCCGCG
TACATACCCCCCCGACACCAACACCACCACCACCACCCCCAACCGCGCCA
CGCGCGCGCGGGAACCGAGGCCCCACGGAGAAGAAACAAAGACTGCAAGA
CATACGTATTATGTAGCCATCCATGCACGCGCAGCAAGCAGCCTCTCGTC
GTCATCCCTTCCCCATCAGTGCAACCACTCGGTCTTCCCACACCCACACA
CACCCCGCTCGCTGCCCACCGGCGGGCTCACTCGCACGCTCTCCGCCGCC
GGCCAATTAAATTCGAGTTCCAGTTGACTTACAGCCAAAGTCACATCTCC
GGTTTCAATCAATCGATTTCTCCCAAAAATTCCACGCTGTCCCACGATCC
AACCCCAACCCCCCATCCCGATCGCCAACACTCGGTTCCCGCCAGAGCGG
CGGCTGATCTGCACTCAGCAGCATCTACATATTCTTCTCATCTTCTTGCA
GATCCGCCGCGCGCCGCACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11037:5626..6396+

>mRNA_L-elsbetiae_contig11037.936.1 ID=mRNA_L-elsbetiae_contig11037.936.1|Name=mRNA_L-elsbetiae_contig11037.936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig11037:5626..6396+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGTACTTTACTCCGCGTACATACCCCCCCGACACCAACACCACCA
CCACCACCCCCAACCGCGCCACGCGCGCGCGGGAACCGAGGCCCCACGGA
GAAGAAACAAAGACTGCAAGACATACGTATTATGTAGCCATCCATGCACG
CGCAGCAAGCAGCCTCTCGTCGTCATCCCTTCCCCATCAGTGCAACCACT
CGGTCTTCCCACACCCACACACACCCCGCTCGCTGCCCACCGGCGGGCTC
ACTCGCACGCTCTCCGCCGCCGGCCAATTAAATTCGAGTTCCAGTTGACT
TACAGCCAAAGTCACATCTCCGGTTTCAATCAATCGATTTCTCCCAAAAA
TTCCACGCTGTCCCACGATCCAACCCCAACCCCCCATCCCGATCGCCAAC
ACTCGGTTCCCGCCAGAGCGGCGGCTGATCTGCACTCAGCAGCATCTACA
TATTCTTCTCATCTTCTTGCAGATCCGCCGCGCGCCGCACACATGCACGT
ACTTTACTCCGCGTACATACCCCCCCGACACCAACACCACCACCACCACC
CCCAACCGCGCCACGCGCGCGCGGGAACCGAGGCCCCACGGAGAAGAAAC
AAAGACTGCAAGACATACGTATTATGTAGCCATCCATGCACGCGCAGCAA
GCAGCCTCTCGTCGTCATCCCTTCCCCATCAGTGCAACCACTCGGTCTTC
CCACACCCACACACACCCCGCTCGCTGCCCACCGGCGGGCTCACTCGCAC
GCTCTCCGCCGCCGGCCAATTAAATTCGAGTTCCAGTTGACTTACAGCCA
AAGTCACATCTCCGGTTTCAATCAATCGATTTCTCCCAAAAATTCCACGC
TGTCCCACGATCCAACCCCAACCCCCCATCCCGATCGCCAACACTCGGTT
CCCGCCAGAGCGGCGGCTGATCTGCACTCAGCAGCATCTACATATTCTTC
TCATCTTCTTGCAGATCCGCCGCGCGCCGCACAC
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