mRNA_L-elsbetiae_contig1103.930.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1103.930.1
Unique NamemRNA_L-elsbetiae_contig1103.930.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1103.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1103contigL-elsbetiae_contig1103:1077..1462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlobin-like
Ec32 orthologEc-07_007370.1
Exons1
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.8806055-CDS-L-elsbetiae_contig1103:1076..14601622815318.8806055-CDS-L-elsbetiae_contig1103:1076..1460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 1077..1460 +
1691682835.7887518-CDS-L-elsbetiae_contig1103:1076..14601691682835.7887518-CDS-L-elsbetiae_contig1103:1076..1460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 1077..1460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1103.930.1prot_L-elsbetiae_contig1103.930.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1103 1077..1460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1103.930.1

>prot_L-elsbetiae_contig1103.930.1 ID=prot_L-elsbetiae_contig1103.930.1|Name=mRNA_L-elsbetiae_contig1103.930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
VPAGGLWGGRERTLLPSEMGRVNGTVKALNSVAVKRRGSTGGVIESSGGG
GGSAARAARMRDHRTRSAVSSVTVDTAGGACSPPLASPGGGGGGGGGSSS
KPKGSSRGRVAAMAASFMAGNWGRGGEA
back to top

mRNA from alignment at L-elsbetiae_contig1103:1077..1462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1103.930.1 ID=mRNA_L-elsbetiae_contig1103.930.1|Name=mRNA_L-elsbetiae_contig1103.930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=386bp|location=Sequence derived from alignment at L-elsbetiae_contig1103:1077..1462+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGGCGGGAGGTTTGTGGGGTGGCAGAGAGAGAACTCTGCTGCCGTC
GGAGATGGGTCGCGTCAACGGGACCGTCAAGGCGCTGAACTCCGTCGCCG
TGAAGAGGAGAGGCAGCACCGGGGGCGTGATCGAGAGCAGCGGCGGCGGC
GGCGGCAGCGCCGCCCGCGCGGCCAGGATGAGGGACCACCGCACCCGGTC
CGCCGTTTCTTCGGTCACCGTCGACACCGCGGGGGGAGCGTGCTCGCCGC
CGCTCGCCTCTCCCGGCGGAGGCGGCGGCGGAGGCGGCGGCAGCAGCAGC
AAGCCCAAGGGCAGTAGCAGGGGTCGGGTGGCCGCGATGGCCGCAAGCTT
TATGGCCGGAAACTGGGGGCGTGGGGGCGAGGCGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1103:1077..1462+

>mRNA_L-elsbetiae_contig1103.930.1 ID=mRNA_L-elsbetiae_contig1103.930.1|Name=mRNA_L-elsbetiae_contig1103.930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig1103:1077..1462+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGGCGGGAGGTTTGTGGGGTGGCAGAGAGAGAACTCTGCTGCCGTC
GGAGATGGGTCGCGTCAACGGGACCGTCAAGGCGCTGAACTCCGTCGCCG
TGAAGAGGAGAGGCAGCACCGGGGGCGTGATCGAGAGCAGCGGCGGCGGC
GGCGGCAGCGCCGCCCGCGCGGCCAGGATGAGGGACCACCGCACCCGGTC
CGCCGTTTCTTCGGTCACCGTCGACACCGCGGGGGGAGCGTGCTCGCCGC
CGCTCGCCTCTCCCGGCGGAGGCGGCGGCGGAGGCGGCGGCAGCAGCAGC
AAGCCCAAGGGCAGTAGCAGGGGTCGGGTGGCCGCGATGGCCGCAAGCTT
TATGGCCGGAAACTGGGGGCGTGGGGGCGAGGCGGTTCCGGCGGGAGGTT
TGTGGGGTGGCAGAGAGAGAACTCTGCTGCCGTCGGAGATGGGTCGCGTC
AACGGGACCGTCAAGGCGCTGAACTCCGTCGCCGTGAAGAGGAGAGGCAG
CACCGGGGGCGTGATCGAGAGCAGCGGCGGCGGCGGCGGCAGCGCCGCCC
GCGCGGCCAGGATGAGGGACCACCGCACCCGGTCCGCCGTTTCTTCGGTC
ACCGTCGACACCGCGGGGGGAGCGTGCTCGCCGCCGCTCGCCTCTCCCGG
CGGAGGCGGCGGCGGAGGCGGCGGCAGCAGCAGCAAGCCCAAGGGCAGTA
GCAGGGGTCGGGTGGCCGCGATGGCCGCAAGCTTTATGGCCGGAAACTGG
GGGCGTGGGGGCGAGGCG
back to top