mRNA_L-elsbetiae_contig11026.928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11026.928.1
Unique NamemRNA_L-elsbetiae_contig11026.928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11026.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11026contigL-elsbetiae_contig11026:3309..3889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.6956108-UTR-L-elsbetiae_contig11026:3308..35501622815318.6956108-UTR-L-elsbetiae_contig11026:3308..3550Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11026 3309..3550 +
1691682835.7050505-UTR-L-elsbetiae_contig11026:3308..35501691682835.7050505-UTR-L-elsbetiae_contig11026:3308..3550Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11026 3309..3550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.7089462-CDS-L-elsbetiae_contig11026:3550..38891622815318.7089462-CDS-L-elsbetiae_contig11026:3550..3889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11026 3551..3889 +
1691682835.7177322-CDS-L-elsbetiae_contig11026:3550..38891691682835.7177322-CDS-L-elsbetiae_contig11026:3550..3889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11026 3551..3889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11026.928.1prot_L-elsbetiae_contig11026.928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11026 3551..3889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11026.928.1

>prot_L-elsbetiae_contig11026.928.1 ID=prot_L-elsbetiae_contig11026.928.1|Name=mRNA_L-elsbetiae_contig11026.928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MSAYIGVGVLQPACPLEAGTAWLWSRLDGCVSWMFVPSVKVRIMRADHVC
RKTPSLLPAEVVFYSNLARFLVLFFILHIYFQCSMGSLPLESIFSSRVVP
NLGSHRRVFLSPS
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mRNA from alignment at L-elsbetiae_contig11026:3309..3889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11026.928.1 ID=mRNA_L-elsbetiae_contig11026.928.1|Name=mRNA_L-elsbetiae_contig11026.928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=581bp|location=Sequence derived from alignment at L-elsbetiae_contig11026:3309..3889+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCATGCGGGTTGCAATACCCAACACCTATGCCCCCCCCCCCCCCGTTT
CGATTTTTTGGGGCTTAACCCAGTTTGTTTTCTATTAGGAATTAGTATGG
GAGAGGCCCATGGGGTTAAACCCCCCCACGCGGCGCCCCCTTAAAAATCT
AGGCTGCAGTCCCCCCGAAAACACATAAATCGATACTCGGAGTATGTAGG
ATTTAGTACAGACCCCCCCCCGGGTTCTGGCTTAACTCAGTCATGTCGGC
ATATATAGGTGTTGGGGTGTTGCAGCCCGCATGCCCCTTGGAGGCAGGCA
CGGCGTGGTTGTGGTCTCGCCTTGATGGTTGTGTGTCCTGGATGTTCGTG
CCTTCTGTGAAAGTGCGTATCATGAGGGCGGATCATGTCTGTCGAAAAAC
GCCGAGTTTGCTGCCGGCCGAGGTGGTATTTTACAGTAATTTAGCTCGAT
TTTTGGTATTGTTTTTTATTCTCCACATTTATTTCCAGTGCTCGATGGGC
TCCCTGCCACTAGAGAGCATATTTTCCAGCAGAGTAGTACCGAACCTGGG
GTCACACAGAAGGGTGTTCCTCTCCCCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11026:3309..3889+

>mRNA_L-elsbetiae_contig11026.928.1 ID=mRNA_L-elsbetiae_contig11026.928.1|Name=mRNA_L-elsbetiae_contig11026.928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig11026:3309..3889+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCATATATAGGTGTTGGGGTGTTGCAGCCCGCATGCCCCTTGGA
GGCAGGCACGGCGTGGTTGTGGTCTCGCCTTGATGGTTGTGTGTCCTGGA
TGTTCGTGCCTTCTGTGAAAGTGCGTATCATGAGGGCGGATCATGTCTGT
CGAAAAACGCCGAGTTTGCTGCCGGCCGAGGTGGTATTTTACAGTAATTT
AGCTCGATTTTTGGTATTGTTTTTTATTCTCCACATTTATTTCCAGTGCT
CGATGGGCTCCCTGCCACTAGAGAGCATATTTTCCAGCAGAGTAGTACCG
AACCTGGGGTCACACAGAAGGGTGTTCCTCTCCCCGAGCATGTCGGCATA
TATAGGTGTTGGGGTGTTGCAGCCCGCATGCCCCTTGGAGGCAGGCACGG
CGTGGTTGTGGTCTCGCCTTGATGGTTGTGTGTCCTGGATGTTCGTGCCT
TCTGTGAAAGTGCGTATCATGAGGGCGGATCATGTCTGTCGAAAAACGCC
GAGTTTGCTGCCGGCCGAGGTGGTATTTTACAGTAATTTAGCTCGATTTT
TGGTATTGTTTTTTATTCTCCACATTTATTTCCAGTGCTCGATGGGCTCC
CTGCCACTAGAGAGCATATTTTCCAGCAGAGTAGTACCGAACCTGGGGTC
ACACAGAAGGGTGTTCCTCTCCCCGAGC
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