mRNA_L-elsbetiae_contig1101.915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1101.915.1
Unique NamemRNA_L-elsbetiae_contig1101.915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1101.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1101contigL-elsbetiae_contig1101:4854..5451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1101.915.1prot_L-elsbetiae_contig1101.915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1101 5044..5448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815317.221639-UTR-L-elsbetiae_contig1101:4853..50431622815317.221639-UTR-L-elsbetiae_contig1101:4853..5043Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1101 4854..5043 +
1691682834.7406075-UTR-L-elsbetiae_contig1101:4853..50431691682834.7406075-UTR-L-elsbetiae_contig1101:4853..5043Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1101 4854..5043 +
1622815317.2440794-UTR-L-elsbetiae_contig1101:5448..54511622815317.2440794-UTR-L-elsbetiae_contig1101:5448..5451Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1101 5449..5451 +
1691682834.7629545-UTR-L-elsbetiae_contig1101:5448..54511691682834.7629545-UTR-L-elsbetiae_contig1101:5448..5451Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1101 5449..5451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815317.2333252-CDS-L-elsbetiae_contig1101:5043..54481622815317.2333252-CDS-L-elsbetiae_contig1101:5043..5448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1101 5044..5448 +
1691682834.752832-CDS-L-elsbetiae_contig1101:5043..54481691682834.752832-CDS-L-elsbetiae_contig1101:5043..5448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1101 5044..5448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1101.915.1

>prot_L-elsbetiae_contig1101.915.1 ID=prot_L-elsbetiae_contig1101.915.1|Name=mRNA_L-elsbetiae_contig1101.915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MSQARPLISVAPPSCLAPAHWYKFDGMYVIHDIAHHHYSGWNNNRGRGMH
PTQPANQNPALCTLFYPRVGTYVGWGALAHPVGGKKNSTWLHIARKAATA
RASIDPACTKQNRRTRPQKHESDFCTTAATSFVL*
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mRNA from alignment at L-elsbetiae_contig1101:4854..5451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1101.915.1 ID=mRNA_L-elsbetiae_contig1101.915.1|Name=mRNA_L-elsbetiae_contig1101.915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=598bp|location=Sequence derived from alignment at L-elsbetiae_contig1101:4854..5451+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCACTGTACGCGCTTGCCGCCGCCAGCTCCCCCCCTCCCCTACCCCAG
GGTTTTCATGCAAAGACTTTACGTACCCGCGTGTATGGACTGTGAACCAA
ATCCCAACATCCCCGAAAGCGCACCGCCGTATATGCGCCACAATAAGTAC
AAGCTTTTGACCACACCGATTCTGTTTTTGGCTAGTCGTCATGTCTCAGG
CACGCCCCCTTATTTCTGTCGCCCCTCCCTCTTGTCTCGCGCCCGCACAT
TGGTATAAATTTGATGGTATGTACGTAATACACGACATCGCGCATCATCA
CTACAGCGGGTGGAACAACAACCGTGGCAGGGGGATGCACCCTACTCAAC
CAGCAAATCAGAACCCTGCTCTATGTACTCTCTTTTATCCAAGGGTAGGT
ACGTATGTTGGTTGGGGCGCTTTGGCACACCCGGTTGGGGGAAAAAAAAA
CTCAACCTGGCTACATATCGCTCGCAAAGCAGCAACGGCAAGAGCCAGCA
TAGATCCTGCATGTACGAAACAGAACAGACGCACAAGGCCACAAAAACAC
GAAAGTGACTTTTGTACGACAGCTGCAACATCATTCGTCCTATGAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1101:4854..5451+

>mRNA_L-elsbetiae_contig1101.915.1 ID=mRNA_L-elsbetiae_contig1101.915.1|Name=mRNA_L-elsbetiae_contig1101.915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig1101:4854..5451+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCAGGCACGCCCCCTTATTTCTGTCGCCCCTCCCTCTTGTCTCGC
GCCCGCACATTGGTATAAATTTGATGGTATGTACGTAATACACGACATCG
CGCATCATCACTACAGCGGGTGGAACAACAACCGTGGCAGGGGGATGCAC
CCTACTCAACCAGCAAATCAGAACCCTGCTCTATGTACTCTCTTTTATCC
AAGGGTAGGTACGTATGTTGGTTGGGGCGCTTTGGCACACCCGGTTGGGG
GAAAAAAAAACTCAACCTGGCTACATATCGCTCGCAAAGCAGCAACGGCA
AGAGCCAGCATAGATCCTGCATGTACGAAACAGAACAGACGCACAAGGCC
ACAAAAACACGAAAGTGACTTTTGTACGACAGCTGCAACATCATTCGTCC
TATGAATGTCTCAGGCACGCCCCCTTATTTCTGTCGCCCCTCCCTCTTGT
CTCGCGCCCGCACATTGGTATAAATTTGATGGTATGTACGTAATACACGA
CATCGCGCATCATCACTACAGCGGGTGGAACAACAACCGTGGCAGGGGGA
TGCACCCTACTCAACCAGCAAATCAGAACCCTGCTCTATGTACTCTCTTT
TATCCAAGGGTAGGTACGTATGTTGGTTGGGGCGCTTTGGCACACCCGGT
TGGGGGAAAAAAAAACTCAACCTGGCTACATATCGCTCGCAAAGCAGCAA
CGGCAAGAGCCAGCATAGATCCTGCATGTACGAAACAGAACAGACGCACA
AGGCCACAAAAACACGAAAGTGACTTTTGTACGACAGCTGCAACATCATT
CGTCCTATGA
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