mRNA_L-elsbetiae_contig11007.912.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11007.912.1
Unique NamemRNA_L-elsbetiae_contig11007.912.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: D8LMR3_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR3_ECTSI)

HSP 1 Score: 396 bits (1017), Expect = 4.370e-134
Identity = 206/263 (78.33%), Postives = 222/263 (84.41%), Query Frame = 1
Query:    1 RHTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSYA 789
            +HTASRLAEEGA V+VHGRRE+AV+EA+E V G G G KVEG+VADLSS  G NHLCDEVL  TDRLDCLLNNAGVFEADFRHSDDG EYTFAVNVLAPYVITGRLL L+AK+PGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHA+YSLSKLLDIMFNAELARRAP G+TCNSLDPGTVNTKMLRAGWGMGGIP+K         SANDQFYLATSDDV+ ++GEY                EAC RLW+VLE+LSGFSYA
Sbjct:   64 KHTASRLAEEGATVLVHGRRESAVREAVEHVGG-GKG-KVEGIVADLSSLRGANHLCDEVLRLTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGITCNSLDPGTVNTKMLRAGWGMGGIPVK---------SANDQFYLATSDDVTDSSGEYXXXXXXXXXXXXXXXXEACRRLWRVLEELSGFSYA 315          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK)

HSP 1 Score: 242 bits (618), Expect = 1.160e-73
Identity = 131/264 (49.62%), Postives = 174/264 (65.91%), Query Frame = 1
Query:    1 RHTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDGV--TCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSY 786
            RHT+ +LAE GARVIVHGR     +E ++++K     +K++  VADLS  S ++ L D++  +   +DCL+NNAGVFE  F+ + DG E TFAVNV AP+V+T RLL ++ K PG  R++ V+S+S    +DF+NLQFEKGGY +H++YSLSKL D M   E+A R   G   T N+LDPGTVNTKML AGWGM GIP+ R         AN++F+LATS DV G  G+Y+ S R       A D EA  RLW+ LE  +G +Y
Sbjct:   74 RHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADLSETSNVHTLADQICEKYSHIDCLINNAGVFEEQFQTTPDGFEMTFAVNVAAPFVLTKRLLPMLQKRPGS-RLIIVSSISQGSRIDFENLQFEKGGYDEHSSYSLSKLCDAMLAFEMAARFGSGAQPTVNTLDPGTVNTKMLLAGWGMCGIPVTR---------ANNEFWLATSPDVEGVNGKYFTSCRESRASQVAYDPEARRRLWEYLERTTGVTY 327          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A7S1HEF3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEF3_HEMAN)

HSP 1 Score: 222 bits (566), Expect = 4.360e-66
Identity = 122/265 (46.04%), Postives = 171/265 (64.53%), Query Frame = 1
Query:    4 HTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARR---APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSYA 789
            HTA++LA++G +V++HGR +  +   ++ +K K  G +++  +AD +S   +  L  E+ A+  R+D L+NNAGVF    + + DG+E TF VNVLAP+++T  +L LV KS  G +++ V+S+S SY+LDFDNLQ +KG +SDH++YSLSKL + M   ELA R   A  GVT N+LDPGTVNTKML AGWGM GI + R         AN Q  LAT   + G TG+Y+V  R     PP  D E   RLWK++ DL+G  Y+
Sbjct:   60 HTATKLAQDGFKVLIHGRSQKRIDATVQRIKDKAPGCELDTFLADFASLEDVRKLSKELHAKCPRIDLLINNAGVFSQSMQKTVDGNEMTFQVNVLAPFLLTSLVLDLVKKSEKG-KIIIVSSISQSYALDFDNLQMQKG-FSDHSSYSLSKLCNAMHAIELAERLKGALPGVTVNTLDPGTVNTKMLEAGWGMCGIDLSR---------ANYQHTLATDPSLDGETGQYFVGGRNTKASPPCYDTEQRQRLWKIMTDLTGADYS 313          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A7S2V5E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E2_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.110e-65
Identity = 129/273 (47.25%), Postives = 176/273 (64.47%), Query Frame = 1
Query:    1 RHTASRLAEEGA----RVIVHGRRETAVKEAIEFVKGK-----GNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARR--APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSY 786
            RHT  RLA   A     V+VHGR       A+++V+ K     G G +VE +VAD+S+  G+  L ++  AR  RLDCL+NNAGVFE  ++ ++D  E TFAVNV+APY++T  LL L+    G  R++NV+S+S  Y ++FDNLQF+ GGYSDHAAYSLSKLL +M++ E A R  +PD +T NSLDPGTVNTKML AGWG  GI + R         A+++F+LATSD V G  G Y+V +   +    A D     +L+++LE ++G SY
Sbjct:   95 RHTCGRLAALAADGDSTVVVHGRDPARCALAVDWVREKSLSAGGGGCRVESIVADISTIRGVASLANQFKARFGRLDCLINNAGVFEQSYQLTEDNLEMTFAVNVMAPYLLTFLLLDLMLPHKGS-RIINVSSISQGYDVNFDNLQFQNGGYSDHAAYSLSKLLMVMYSLESAERIGSPD-LTINSLDPGTVNTKMLYAGWGACGIDVSR---------ADNEFWLATSDQVEGINGRYFVGKGDSSASRAAYDSTNRSKLFEILEGITGVSY 356          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A835YNH2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH2_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.460e-61
Identity = 120/266 (45.11%), Postives = 167/266 (62.78%), Query Frame = 1
Query:    1 RHTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGG---YSDHAAYSLSKLLDIMFNAELARR-APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSY 786
            RHTA++LA +GA V+VHGR +  + +A+E VK + +  +V G++AD+S+ +GM  L   V   T  LD L++NAG+FE+  R ++DG+E  FA NVLAP+V TG LL L+  S    RV+ V+S+S  Y+    + QFE+ G   +SDH +YSLSKL D M + E   R A   +T N+LDPGTVNTKML AGWGM GI + R         ANDQ+ LATS+++ G +G+Y++S R     P   D  A  +LW     +SGF Y
Sbjct:   24 RHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRAS-AAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNR---------ANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 279          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A2P6TE58_CHLSO (Short chain dehydrogenase reductase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TE58_CHLSO)

HSP 1 Score: 208 bits (529), Expect = 4.320e-61
Identity = 125/268 (46.64%), Postives = 168/268 (62.69%), Query Frame = 1
Query:    4 HTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQ---KVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELA---RRAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSYA 789
            HTA RLA +GA V+VHGR    V++A+  V+  G+G       G VADL+S + +  L +EV A +  +D L+NNAGVFE   R S+DG E T+AVNV AP+++T  LL  V +     RVV V+S+SA+ S+D+ NLQ E+G +S H AYSLSKL + +F  ELA   R A   VTCN LDPGTVNTKML AGWG  GIP+K          AN +   AT   ++G +GEY+V  R+  PP  A D+    RLW++LE+ +G  ++
Sbjct:   22 HTAQRLAAQGATVLVHGRNPGRVEQAVAAVERAGSGSGGAPPRGFVADLASLAQVRRLAEEVAASSPSVDVLINNAGVFEQQLRKSEDGFELTWAVNVAAPFLLTACLLEAVRE-----RVVVVSSISAASSIDWGNLQQERG-FSAHNAYSLSKLAEQLFTFELADRLRAAGSPVTCNCLDPGTVNTKMLSAGWGSIGIPVKE---------ANYELKAATDPALAGTSGEYFVGGRIARPPSIARDKAEQQRLWRLLEEQTGAKWS 274          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A5J4XR04_9CHLO (Short chain dehydrogenase reductase family n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XR04_9CHLO)

HSP 1 Score: 197 bits (501), Expect = 5.330e-57
Identity = 114/260 (43.85%), Postives = 157/260 (60.38%), Query Frame = 1
Query:    1 RHTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRA-PDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSG 777
            RHTAS+L   GA V++HGR +  V      +     G K+     +L+SFS +    + + A  + +D L+NNAGVFE     S+DG E T+A+NVLAP+++T  L  +V       R+VNV+S+SA  S+DFDNLQ EKG +S H +YSLSKL  +MF  +LA    P GVT N LDPGTVNTKML AGWG  GI +K          AN ++ LAT   ++  TG+YYV+ R    P  A+D++   RLW+++ D +G
Sbjct:   22 RHTASKLVAAGANVLLHGRTQEKVTATKRDLDSIAKGNKISSYTYNLASFSQIRKFAEAIRANHNNIDVLINNAGVFETQRSLSEDGYEMTWAINVLAPFLLTSLLKDVVTD-----RIVNVSSISAGSSIDFDNLQQEKG-FSSHNSYSLSKLASMMFTCDLAEHMKPKGVTVNCLDPGTVNTKMLIAGWGACGIDVK---------DANYEYKLATDPSLAKETGKYYVNGRESRLPAVAKDQKFRKRLWQIMTDQTG 266          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A061S8W3_9CHLO (Short chain dehydrogenase reductase family n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8W3_9CHLO)

HSP 1 Score: 194 bits (493), Expect = 9.270e-56
Identity = 121/264 (45.83%), Postives = 157/264 (59.47%), Query Frame = 1
Query:    4 HTASRLAEEGARVIVHGRRETAVKEAIEFVK--GKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDG-VTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSY 786
            HTA  LA  G  VIVHGR E  V++A+  V+   +GNG KV     D SS   +  L D+V      +D L+NNAGV++     S DG E T+AVNVLAP+V+T  L  +V       RVVN AS+SA +S+D DNL  EKG +S H AYSLSKLLDI+   ELA R  +   T N+LDPGTVNTKML AGWG  GIP++          + D+FY++TS D+ G +GEY+V +R    P  A D      LW++ E  +G  +
Sbjct:   27 HTAKLLAAGGGSVIVHGRNELRVRDAVAEVERVARGNG-KVASYTRDFSSLQEVKRLGDDVKRDFATIDVLVNNAGVYKEGKELSQDGFEMTYAVNVLAPFVLTSALHNIVTS-----RVVNTASISAGHSVDLDNLNQEKG-FSSHNAYSLSKLLDIILTFELAERLKEKPFTVNTLDPGTVNTKMLLAGWGPIGIPVE----------SADEFYVSTSPDLEGVSGEYFVGKRRTRAPAAAYDRGLRETLWRLWEQQTGVRF 273          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A7S0QHA5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHA5_9CRYP)

HSP 1 Score: 195 bits (496), Expect = 2.230e-55
Identity = 116/260 (44.62%), Postives = 155/260 (59.62%), Query Frame = 1
Query:    4 HTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELAR---RAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLS 774
            HTA++LA  G  V++HGR    ++EA+  ++       VE   AD SS   ++    EVL +   LD L+NNAGVF    R ++DG+E TF VNVLAP+++T  LL +VAK+  G RV+ V+S+S S  +D+DNLQ EKG +S H +YSLSKL + M   ELAR   R    V+ N+LDPGTVNTKML AGWG  G+ +           AND+F LAT     G +G+Y+V  R      P  D  AC  LW+ LE L+
Sbjct:   80 HTATKLANAGYFVLIHGRDPVRIQEALRKIRLSNPKAGVESFQADFSSLRDVSRFASEVLEQYQCLDLLINNAGVFSQQMRTTEDGNEMTFQVNVLAPFLLTKALLPIVAKAQAG-RVIIVSSISQSSRIDWDNLQMEKG-FSSHESYSLSKLCNAMHALELARATARTAPHVSVNTLDPGTVNTKMLLAGWGYCGMEVA---------DANDEFLLATDPRFEGVSGKYFVGGRERQAAAPCYDAAACAELWRRLEALT 328          
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Match: A0A7S4DEJ2_9EUKA (Hypothetical protein n=4 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DEJ2_9EUKA)

HSP 1 Score: 195 bits (496), Expect = 3.000e-55
Identity = 119/262 (45.42%), Postives = 156/262 (59.54%), Query Frame = 1
Query:    4 HTASRLAEEGARVIVHGRRETAVKEAIEFVKGKGNGQKVEGVVADLSSFSGMNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVITGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPD-GVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQASFFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGFSY 786
            HTA RLA EG +V++HGR +  + +AI  ++   N   +EG +AD  S   +  L + V +    ++ L+NNAGVF    R + DG E T+ VNV+AP+++T  LL  + KSP G RV+ V+S+S S SLDFDNLQ +KG YS H AYS+SKL D M   ELA +    GVT N+LDPGTVNTKML  GWG  GI +           ANDQF+LATS ++   +G YYV R   T    A       RLW+ LED  G  +
Sbjct:  100 HTARRLAAEGCKVVLHGRSQQRLDKAISEIRRTTNNPNIEGYLADFESLDEIRKLGETVRSDHPCINILINNAGVFNPKNRKTKDGYETTWQVNVMAPFLLTHALLPNLKKSPKG-RVIIVSSISQSSSLDFDNLQQQKG-YSAHNAYSISKLADAMIAYELADKLQGTGVTVNTLDPGTVNTKMLLEGWGPCGISVS---------DANDQFWLATSPELENTSGRYYVYRNERTSSRFAHTPANRQRLWRELEDSCGIRF 350          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11007.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR3_ECTSI4.370e-13478.33Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A6V2U0S1_HETAK1.160e-7349.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1HEF3_HEMAN4.360e-6646.04Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S2V5E2_9STRA1.110e-6547.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YNH2_9STRA2.460e-6145.11Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A2P6TE58_CHLSO4.320e-6146.64Short chain dehydrogenase reductase family n=1 Tax... [more]
A0A5J4XR04_9CHLO5.330e-5743.85Short chain dehydrogenase reductase family n=1 Tax... [more]
A0A061S8W3_9CHLO9.270e-5645.83Short chain dehydrogenase reductase family n=2 Tax... [more]
A0A7S0QHA5_9CRYP2.230e-5544.62Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S4DEJ2_9EUKA3.000e-5545.42Hypothetical protein n=4 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11007contigL-elsbetiae_contig11007:3828..5722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue1.8e-89
Seed eggNOG ortholog2880.D8LMR3
Hectar predicted targeting categoryother localisation
GOsGO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009987,GO:0033554,GO:0050896,GO:0051716,GO:0071214,GO:0071470,GO:0104004
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1244
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11007.912.1prot_L-elsbetiae_contig11007.912.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11007 4280..5566 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.953478-UTR-L-elsbetiae_contig11007:3827..42791622815316.953478-UTR-L-elsbetiae_contig11007:3827..4279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 3828..4279 -
1691682834.567897-UTR-L-elsbetiae_contig11007:3827..42791691682834.567897-UTR-L-elsbetiae_contig11007:3827..4279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 3828..4279 -
1622815317.0063484-UTR-L-elsbetiae_contig11007:5566..57221622815317.0063484-UTR-L-elsbetiae_contig11007:5566..5722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 5567..5722 -
1691682834.6151512-UTR-L-elsbetiae_contig11007:5566..57221691682834.6151512-UTR-L-elsbetiae_contig11007:5566..5722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 5567..5722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.966104-CDS-L-elsbetiae_contig11007:4279..44481622815316.966104-CDS-L-elsbetiae_contig11007:4279..4448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 4280..4448 -
1691682834.5847883-CDS-L-elsbetiae_contig11007:4279..44481691682834.5847883-CDS-L-elsbetiae_contig11007:4279..4448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 4280..4448 -
1622815316.977549-CDS-L-elsbetiae_contig11007:4726..51261622815316.977549-CDS-L-elsbetiae_contig11007:4726..5126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 4727..5126 -
1691682834.5988793-CDS-L-elsbetiae_contig11007:4726..51261691682834.5988793-CDS-L-elsbetiae_contig11007:4726..5126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 4727..5126 -
1622815316.9935975-CDS-L-elsbetiae_contig11007:5499..55661622815316.9935975-CDS-L-elsbetiae_contig11007:5499..5566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 5500..5566 -
1691682834.6072965-CDS-L-elsbetiae_contig11007:5499..55661691682834.6072965-CDS-L-elsbetiae_contig11007:5499..5566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 5500..5566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11007.912.1

>prot_L-elsbetiae_contig11007.912.1 ID=prot_L-elsbetiae_contig11007.912.1|Name=mRNA_L-elsbetiae_contig11007.912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MNHLCDEVLARTDRLDCLLNNAGVFEADFRHSDDGSEYTFAVNVLAPYVI
TGRLLGLVAKSPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLS
KLLDIMFNAELARRAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKRQAS
FFRKGSANDQFYLATSDDVSGNTGEYYVSRRVYTPPPPAEDEEACGRLWK
VLEDLSGFSYA*
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mRNA from alignment at L-elsbetiae_contig11007:3828..5722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11007.912.1 ID=mRNA_L-elsbetiae_contig11007.912.1|Name=mRNA_L-elsbetiae_contig11007.912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1895bp|location=Sequence derived from alignment at L-elsbetiae_contig11007:3828..5722- (Laminarionema elsbetiae ELsaHSoW15)
AGGCACACGGCCTCGCGACTCGCCGAGGAAGGTGCACGTGTTATCGTCCA CGGCCGCCGAGAAACGGCCGTGAAAGAGGCGATCGAATTCGTAAAAGGAA AGGGGAACGGCCAAAAGGTAGAGGGCGTCGTTGCCGACTTGAGCTCGTTT AGCGGAATGAACCACCTGTGCGACGAGGTTTTGGCTCGGACCGACAGGCT CGACTGCCTCCTCAACAACGCAGGTGAGAAGCTATAACCTCACGAAGGAC CCTATGCATACACAGGAGTGGCCTGCGGCCCGAAATATCCAGAGAGAGTG AAAGAGAGAGAGAGACAGAGAGACAGAGAGGTTCGGTGCTGCCGTTTTGG TTGGAGCTTGCCGCGAGACCTGCTCGCCCTGTCTTGTGTGACGGTTTCGT GTGCAGGTTGCGCAACAACTATTGCTCGCCTGCTTGTGCCGTTTTGCTTT ACTACCGCAGCAGTAGGTGTGCCACAACCGAACACGACGGCATCAATTCG ATCCCGGGTCGCACATAGGTCCGCCTTGGTTCGCGCACGCGTGACGCTCC CGGCGTCTCTTGCCGGCCGATCGATCGTTCGTTGTCGTGCACTCAGGAGT TTTTGAGGCGGACTTTCGGCACAGCGACGACGGCTCGGAGTACACCTTCG CGGTGAACGTTCTCGCACCGTACGTCATCACGGGCCGCCTCCTGGGCTTG GTGGCCAAGTCGCCAGGAGGTGGCCGTGTGGTGAACGTGGCGAGCCTGTC TGCGTCGTACTCCCTCGACTTCGACAACCTCCAGTTCGAAAAAGGCGGGT ACAGCGACCACGCCGCGTACTCGCTCTCTAAGCTGCTGGACATCATGTTC AACGCGGAGCTCGCTCGGAGAGCTCCCGACGGGGTCACGTGCAACTCTCT CGACCCAGGAACCGTGAACACCAAGATGCTCAGGGCCGGCTGGGGCATGG GGGGGATCCCGATCAAGAGGCAAGCATCTTTTTTTAGAAAAGGCTCGTTG TCCAAACTCGCAACCAATAGCCGGTGCATCGAGTGTGGAGGCTAAGTGCT ACCACTTGTTTATTGCTTTCACGGGCAAGGATGATAATCCCATCAAAGGC CGAAAAGGAAGTATACGCAGCGCTTCCACTGGCTGCCGCTATTGTATTGG CGTGTGATTTCGCGAAACGTGCGTGGTGCCTGGCTTGCTTTTCCTCCACC CGCAGCTCAACCCTGCATTCCCTGTTCGCTGCCTTCACTCCCGTGTGCGT GACTCGACGCGCTGTGGTCAACAGCGCAAACGACCAATTTTATCTGGCAA CGAGCGATGACGTGAGCGGCAACACCGGGGAATACTACGTCAGCCGCAGG GTATACACCCCGCCGCCCCCGGCGGAAGACGAGGAGGCGTGCGGACGGCT GTGGAAAGTGTTGGAAGATCTCAGCGGCTTTAGCTACGCTTGATTTTACG TTCCCAGGGTCGATTTGAAAAGGGCCGTTCATTCAACGTGCAGGCCGTTA TCGATATGCCACGGCAACGAACGCCCATAGAGAATAGCCCTACAGGGGCT CCGCCTACATCGTCGCTTTTGTGAATATTACAATAGGCTCGCGTGCGGGG GGGGCGTGTAAGTACTCCCGCACGTTTTGTGCAGCACGTTTTGCGAAGAA GAGTCCGCTCTTGTGTGCCTCTTGCTGGACCCGCGGTTGCATTCGGGAGG ATACAAAAACCTGTAGACCCGGGGGTTGTACTGAGTACATAGCACGGTTA GCGAAACGCGCATTTTTGTTGAGACGCAGATGGACCACACCGGAAGAGAG ACGATACAACGTTTCAAAAACGAAGACCAGTTTGGCAACGCCGAGCGCAG ACCGCCCGCGCCACGCGGCACAATTGATCGGAGAATCGTGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11007:3828..5722-

>mRNA_L-elsbetiae_contig11007.912.1 ID=mRNA_L-elsbetiae_contig11007.912.1|Name=mRNA_L-elsbetiae_contig11007.912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig11007:3828..5722- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCACCTGTGCGACGAGGTTTTGGCTCGGACCGACAGGCTCGACTG
CCTCCTCAACAACGCAGATGAACCACCTGTGCGACGAGGTTTTGGCTCGG
ACCGACAGGCTCGACTGCCTCCTCAACAACGCAGGAGTTTTTGAGGCGGA
CTTTCGGCACAGCGACGACGGCTCGGAGTACACCTTCGCGGTGAACGTTC
TCGCACCGTACGTCATCACGGGCCGCCTCCTGGGCTTGGTGGCCAAGTCG
CCAGGAGGTGGCCGTGTGGTGAACGTGGCGAGCCTGTCTGCGTCGTACTC
CCTCGACTTCGACAACCTCCAGTTCGAAAAAGGCGGGTACAGCGACCACG
CCGCGTACTCGCTCTCTAAGCTGCTGGACATCATGTTCAACGCGGAGCTC
GCTCGGAGAGCTCCCGACGGGGTCACGTGCAACTCTCTCGACCCAGGAAC
CGTGAACACCAAGATGCTCAGGGCCGGCTGGGGCATGGGGGGGATCCCGA
TCAAGAGGCAAGCATCTTTTTTTAGAAAAGGCTCGAGTTTTTGAGGCGGA
CTTTCGGCACAGCGACGACGGCTCGGAGTACACCTTCGCGGTGAACGTTC
TCGCACCGTACGTCATCACGGGCCGCCTCCTGGGCTTGGTGGCCAAGTCG
CCAGGAGGTGGCCGTGTGGTGAACGTGGCGAGCCTGTCTGCGTCGTACTC
CCTCGACTTCGACAACCTCCAGTTCGAAAAAGGCGGGTACAGCGACCACG
CCGCGTACTCGCTCTCTAAGCTGCTGGACATCATGTTCAACGCGGAGCTC
GCTCGGAGAGCTCCCGACGGGGTCACGTGCAACTCTCTCGACCCAGGAAC
CGTGAACACCAAGATGCTCAGGGCCGGCTGGGGCATGGGGGGGATCCCGA
TCAAGAGGCAAGCATCTTTTTTTAGAAAAGGCTCCGCAAACGACCAATTT
TATCTGGCAACGAGCGATGACGTGAGCGGCAACACCGGGGAATACTACGT
CAGCCGCAGGGTATACACCCCGCCGCCCCCGGCGGAAGACGAGGAGGCGT
GCGGACGGCTGTGGAAAGTGTTGGAAGATCTCAGCGGCTTTAGCTACGCT
TGACGCAAACGACCAATTTTATCTGGCAACGAGCGATGACGTGAGCGGCA
ACACCGGGGAATACTACGTCAGCCGCAGGGTATACACCCCGCCGCCCCCG
GCGGAAGACGAGGAGGCGTGCGGACGGCTGTGGAAAGTGTTGGAAGATCT
CAGCGGCTTTAGCTACGCTTGA
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