mRNA_L-elsbetiae_contig11001.909.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11001.909.1
Unique NamemRNA_L-elsbetiae_contig11001.909.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11001.909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11001contigL-elsbetiae_contig11001:3284..4630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size454
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11001.909.1prot_L-elsbetiae_contig11001.909.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11001 3285..4630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.7001624-CDS-L-elsbetiae_contig11001:3284..33771622815316.7001624-CDS-L-elsbetiae_contig11001:3284..3377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11001 3285..3377 -
1691682834.430377-CDS-L-elsbetiae_contig11001:3284..33771691682834.430377-CDS-L-elsbetiae_contig11001:3284..3377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11001 3285..3377 -
1622815316.713734-CDS-L-elsbetiae_contig11001:3741..40321622815316.713734-CDS-L-elsbetiae_contig11001:3741..4032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11001 3742..4032 -
1691682834.4399176-CDS-L-elsbetiae_contig11001:3741..40321691682834.4399176-CDS-L-elsbetiae_contig11001:3741..4032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11001 3742..4032 -
1622815316.7237563-CDS-L-elsbetiae_contig11001:4561..46301622815316.7237563-CDS-L-elsbetiae_contig11001:4561..4630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11001 4562..4630 -
1691682834.4489872-CDS-L-elsbetiae_contig11001:4561..46301691682834.4489872-CDS-L-elsbetiae_contig11001:4561..4630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11001 4562..4630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11001.909.1

>prot_L-elsbetiae_contig11001.909.1 ID=prot_L-elsbetiae_contig11001.909.1|Name=mRNA_L-elsbetiae_contig11001.909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
AAADDPAAAAAAAVLEPTAPVKQVGRAHKVPASSTAAVMAPPAASSPLQQ
PRSLTAEQTHGSGPTGGTCCLQCNSGARGRRRPPECSMCDEEDNTRQIAS
NGGSYVVLEHEDGEVEVLCDDCFEDRHDRTAADDRGQLMGTIKRNDNGFV
P
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mRNA from alignment at L-elsbetiae_contig11001:3284..4630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11001.909.1 ID=mRNA_L-elsbetiae_contig11001.909.1|Name=mRNA_L-elsbetiae_contig11001.909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1347bp|location=Sequence derived from alignment at L-elsbetiae_contig11001:3284..4630- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCAGCTGACGATCCGGCGGCGGCTGCGGCTGCTGCCGTGCTGGAACC
GACTGCCCCAGTGAAACAGGTACGTTTTATCATCTGCTTTGCTTTCCCCC
TTGAGTTTGTTTTTCCGGTGGTGCTGCAAATTGCGCTGCTGCACGAAGCA
AGCTTTCTTTCTCCTCTGCTTTGCTTGCGAGCGGAGATATGTTGCAATGG
AATATCGTTATTTTTTCCGATAGAAGTACTTTTTTTTGTTTCGGTAGGTA
CCCATTTTCAACTGCCAGAATGTCTCTTGTCCTCTGTCATTCTCTCGGGT
GAACGAAATTTGTTTGTGAAGAAGTCGCGGCTACGTGGAGGTGGTACTTA
GGGTTACAGAGAACCACATTCGTTCTTCGGCCATTTCGGGTAGAGGAATG
CCACGGAAGACATCACGGTGCTGCTGAAGCTCTACATACCCTGGATGTGA
ATGAAACCTGTTGTTCGCTTGAGCTACGCAACCATGTGCGGGTTTTGCTT
GTTTCACTTCATCCCGGCTGGAAATTTGTGTTTTACCATGGCGCTCGACC
TCTCGTTTTAAGTTTGTTTTCCGGATGTACCCCCTTCCTTTTCGTTAGGT
CGGGAGGGCGCATAAGGTGCCGGCATCAAGCACAGCGGCCGTGATGGCAC
CACCTGCGGCATCATCACCGTTGCAGCAACCGCGTTCGCTGACCGCCGAG
CAGACCCACGGCTCCGGCCCCACCGGGGGTACGTGCTGCCTCCAGTGCAA
CAGTGGTGCCAGAGGTCGTCGTCGGCCGCCCGAGTGCAGCATGTGTGATG
AAGAAGACAACACGAGGCAAATCGCATCCAATGGTGGCTCGTACGTCGTC
CTAGAACATGAAGACGGAGAAGTGGAGGTGTTGTGTGACGTGAGTTCGCT
CGCCATGCCGCACCAAGTTCAGTAGACCAGCAGTAGCACTATATGTCGTG
CGCTTCTCTCTGTGCGTGCGTCTAGTGTCGGCGTACGGGAGTTATTTTTC
AAAAATCGCGCCCCGACTTCGAGTTTTCGTGCTTCAGTAACAGCCGTAGT
GCTGAAAGGTGAGAGCGGCAAAACGCAAACTCGTATCATTGGTACGCCTA
AAGATACTTGCATGTGGCTTCCTAGCCAGCGCTTGCTCGCACTGGAACTG
TACTTGGTCAGGCAGCCCTCTCTTTTACAGCACACACTGGGCCGCGTGCT
TTAAATGCTTCGTTCCTTGGGTTGGCTCCGTGGCCGTGTGTCTATTCCTA
CAGGACTGCTTCGAGGACCGTCACGACCGCACCGCGGCGGACGACAGGGG
GCAGCTAATGGGAACAATCAAGCGCAACGACAACGGGTTTGTGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11001:3284..4630-

>mRNA_L-elsbetiae_contig11001.909.1 ID=mRNA_L-elsbetiae_contig11001.909.1|Name=mRNA_L-elsbetiae_contig11001.909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig11001:3284..4630- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCAGCTGACGATCCGGCGGCGGCTGCGGCTGCTGCCGTGCTGGAACC
GACTGCCCCAGTGAAACAGGCGGCAGCTGACGATCCGGCGGCGGCTGCGG
CTGCTGCCGTGCTGGAACCGACTGCCCCAGTGAAACAGGTCGGGAGGGCG
CATAAGGTGCCGGCATCAAGCACAGCGGCCGTGATGGCACCACCTGCGGC
ATCATCACCGTTGCAGCAACCGCGTTCGCTGACCGCCGAGCAGACCCACG
GCTCCGGCCCCACCGGGGGTACGTGCTGCCTCCAGTGCAACAGTGGTGCC
AGAGGTCGTCGTCGGCCGCCCGAGTGCAGCATGTGTGATGAAGAAGACAA
CACGAGGCAAATCGCATCCAATGGTGGCTCGTACGTCGTCCTAGAACATG
AAGACGGAGAAGTGGAGGTGTTGTGTGACGTCGGGAGGGCGCATAAGGTG
CCGGCATCAAGCACAGCGGCCGTGATGGCACCACCTGCGGCATCATCACC
GTTGCAGCAACCGCGTTCGCTGACCGCCGAGCAGACCCACGGCTCCGGCC
CCACCGGGGGTACGTGCTGCCTCCAGTGCAACAGTGGTGCCAGAGGTCGT
CGTCGGCCGCCCGAGTGCAGCATGTGTGATGAAGAAGACAACACGAGGCA
AATCGCATCCAATGGTGGCTCGTACGTCGTCCTAGAACATGAAGACGGAG
AAGTGGAGGTGTTGTGTGACGACTGCTTCGAGGACCGTCACGACCGCACC
GCGGCGGACGACAGGGGGCAGCTAATGGGAACAATCAAGCGCAACGACAA
CGGGTTTGTGCCGGACTGCTTCGAGGACCGTCACGACCGCACCGCGGCGG
ACGACAGGGGGCAGCTAATGGGAACAATCAAGCGCAACGACAACGGGTTT
GTGCCG
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