mRNA_L-elsbetiae_contig110.905.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig110.905.1
Unique NamemRNA_L-elsbetiae_contig110.905.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig110.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig110contigL-elsbetiae_contig110:48748..49461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size715
Cds size417
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.1402876-UTR-L-elsbetiae_contig110:48747..490441622815316.1402876-UTR-L-elsbetiae_contig110:48747..49044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 48748..49044 +
1691682834.026132-UTR-L-elsbetiae_contig110:48747..490441691682834.026132-UTR-L-elsbetiae_contig110:48747..49044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 48748..49044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.150978-CDS-L-elsbetiae_contig110:49044..494611622815316.150978-CDS-L-elsbetiae_contig110:49044..49461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig110 49045..49461 +
1691682834.043365-CDS-L-elsbetiae_contig110:49044..494611691682834.043365-CDS-L-elsbetiae_contig110:49044..49461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig110 49045..49461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig110.905.1prot_L-elsbetiae_contig110.905.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig110 49045..49461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig110.905.1

>prot_L-elsbetiae_contig110.905.1 ID=prot_L-elsbetiae_contig110.905.1|Name=mRNA_L-elsbetiae_contig110.905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MAGQDYACRHRHDRGALELRWIAIPLPSLLLTAEVVSVVEVVLRLQIFSQ
HEALVAGSNQAQATMIRLGQQQQQPPLAPPPPLCLRHHHRTASSLQCKGV
DPARRAGFWWAWGSSRYGCCCCRLRVEGRWERPSPWLRG
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mRNA from alignment at L-elsbetiae_contig110:48748..49461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig110.905.1 ID=mRNA_L-elsbetiae_contig110.905.1|Name=mRNA_L-elsbetiae_contig110.905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig110:48748..49461+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCGCTGCGACCGGCAGACTGACGGTCTTCAGTGAAAACAGCGGTGGTC
AAGCTTCTAAGCCTGCGCAACAGCAGGCGCAGCTTTTTACCGCGTTGTCC
TCCATTCTGCCATGCGCGCTCGACGGGCAGGGGCTTCCCGAGGCTCGATC
GTTCGCGTGGTCGGTCTCTTTGGGTTGATCGTTACCGGGGTGTACGCAAA
GAAGAGAGACAAGGAGTACGGGCAGCGAAGGAGGAGGAGGATAAGGCTAG
GCGCTCACGGTCGAGTGCTATCACCGGACGTGTTATGGTGAGAGTGCATG
GCTGGACAGGATTACGCCTGTCGCCACCGACACGATCGGGGCGCGTTGGA
GTTGCGGTGGATCGCGATTCCTCTCCCCTCCCTCTTGTTGACAGCTGAAG
TGGTTTCGGTAGTAGAGGTGGTGCTGCGGCTGCAGATCTTCTCACAGCAC
GAAGCCCTTGTAGCTGGCAGCAACCAAGCTCAGGCCACAATGATAAGGCT
GGGTCAACAGCAGCAACAGCCCCCCCTGGCCCCGCCGCCGCCGCTCTGTC
TCCGGCATCACCATCGTACAGCTAGCTCCCTACAGTGCAAGGGAGTGGAC
CCGGCGCGTAGAGCAGGATTTTGGTGGGCTTGGGGGTCAAGTCGCTACGG
CTGTTGCTGCTGTAGGCTCCGCGTTGAGGGGAGATGGGAGAGGCCGTCAC
CATGGCTGAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig110:48748..49461+

>mRNA_L-elsbetiae_contig110.905.1 ID=mRNA_L-elsbetiae_contig110.905.1|Name=mRNA_L-elsbetiae_contig110.905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig110:48748..49461+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGACAGGATTACGCCTGTCGCCACCGACACGATCGGGGCGCGTT
GGAGTTGCGGTGGATCGCGATTCCTCTCCCCTCCCTCTTGTTGACAGCTG
AAGTGGTTTCGGTAGTAGAGGTGGTGCTGCGGCTGCAGATCTTCTCACAG
CACGAAGCCCTTGTAGCTGGCAGCAACCAAGCTCAGGCCACAATGATAAG
GCTGGGTCAACAGCAGCAACAGCCCCCCCTGGCCCCGCCGCCGCCGCTCT
GTCTCCGGCATCACCATCGTACAGCTAGCTCCCTACAGTGCAAGGGAGTG
GACCCGGCGCGTAGAGCAGGATTTTGGTGGGCTTGGGGGTCAAGTCGCTA
CGGCTGTTGCTGCTGTAGGCTCCGCGTTGAGGGGAGATGGGAGAGGCCGT
CACCATGGCTGAGGGGGATGGCTGGACAGGATTACGCCTGTCGCCACCGA
CACGATCGGGGCGCGTTGGAGTTGCGGTGGATCGCGATTCCTCTCCCCTC
CCTCTTGTTGACAGCTGAAGTGGTTTCGGTAGTAGAGGTGGTGCTGCGGC
TGCAGATCTTCTCACAGCACGAAGCCCTTGTAGCTGGCAGCAACCAAGCT
CAGGCCACAATGATAAGGCTGGGTCAACAGCAGCAACAGCCCCCCCTGGC
CCCGCCGCCGCCGCTCTGTCTCCGGCATCACCATCGTACAGCTAGCTCCC
TACAGTGCAAGGGAGTGGACCCGGCGCGTAGAGCAGGATTTTGGTGGGCT
TGGGGGTCAAGTCGCTACGGCTGTTGCTGCTGTAGGCTCCGCGTTGAGGG
GAGATGGGAGAGGCCGTCACCATGGCTGAGGGGG
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